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Properties
| Property Name | Value |
|---|
| TranscriptId | 597420 |
| Track | FilteredModels2 |
| ProteinId | 597334 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_18 | supercontig | scaffold_18:147324..149476 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6557 ID=mRNA_6557|Name=jgi.p|Nanoce1779_2|597334|organism=Nannochloropsis oceanica|type=mRNA|length=1701bp
CAGACAGGAAAGTCGACGCCACGCCAATGCTTGGTTGGTGTTCGGGGGCT
AGAGCATGAGGGCAGCATTGCTGCGTATTGTGGTCACAACCCCTCGACGA
GCTTTGACTCGCGGCAGTCCAGTTTGCCTGAGTGACAGTAGCATCAGCAG
GGACAGCGGCATCACGCTTCCCGCCCCACCACCAAGCCTCCATCAAGCGA
ATAACCACGTCACCATGCCCCTCCATGTGTTTACGACTGGCTCGGGCAAG
GATAAGGGCAGCAGCAGTATCAGCAGCAGCAGCAGCAACAGCAACAGTAG
CAGCATCGCGTCTCCTAGCACGCTAATGACTCCCTCCCACCGTGGGCTGG
CCACTTCGGCCGCCGCCCCGGGAGAAGCCGTGTTGCTCAAGGATGAATAC
GGCAACATGGATGCATCGGGACAGACATATGTGGTACCGCATTTCACGAC
GGAGAGCGGCGTGGCCATGCGGGACGTGGAAGTACGCTACAACACCTTTG
GGCACCTGAACGAAGCGAAAGACAACGTCTTGGTTGTATGCCATGCCCTT
ACGGGGAATGCCCGGTTGGATACGTGGTGGTCCTCCATCCTGGGGCCCGG
GAAAGCCTTCGATACCGACAAGTACCTCGTTGTGTGCGCGAACATCTTGG
GCTCCTGCTACGGCACTACCGGCCCCACGTCCCTCGATCCGGCGACGGGC
CGACCCTACGGTGTGCGCTTCCCCCAGGTGACTATCCGCGACACGGTGGC
CCTGCACATACGCATGTTGAAGGAGGCATTGGGTGCCCGTTCGGTTGCCT
GTGTGGTAGGAGGTTCCTTGGGAGGGATGCAAGCCCTGGAATGGGTCTTC
CTCGGTAACAGCAACAAAAATCACAGCAGCAACAACAATGAAAATGAGGA
GAATTTTGTGCGTTCTGCGGTGGTGATCGCGTGCGGGGCCCGTCACACGG
CGTGGCAGATCGGCATCTCCGAGACGCAGCGCCAAGCCATTTACGCAGAC
CCCCTCTGGCGTGGGGGCGAATTCGATCACACTCGTCCCCCGTTGCAGGG
GCTGGCAGTGGCGCGGCAGATTGCCATGTTCTCCTACAGAACTCCCCATG
GGTTCGAAAATAAATTCGGGAGGGCACAGGCGGAGGATGGGAGGTTTGAG
GTGAGGCGGTATTTGGAATACCAAGGACAGAAATTCTTGTCGCGATTCGA
CGCCTTGACCTATGTGAGATTAACGGAAAAAATGGACTCTCATGATGTGG
GGAGGGGGAGGGGAGGCATGGAGGTGGCGCTGAAGGGCCTGCGGGTGCCG
GTGTTGGTGCTGGGGATTGACAGTGACGTCTTGTACCCCTTGCATGAACA
GGAGGAGATGGCCCGGTTGATTCCGAAGGGAGAATTAAGGGTGGTAAGGA
GTAGGGAGGGGCATGACGGGTTTTTACTGGAGCAGGAGCAGGTGGGGGGG
GCGATGAAGGAGTTCTTGAAGGAGCATCGACTGTAGTGCGGGGCGAGGAA
GGGAAGGGAGGGAGGCGGTTAGGGGGGGAAGGAGGGTGGAGTTTGATGAG
ATCGAGAACGAATGGTGCAAGCATGAGAGTGGGTGACGGGAAGATAGATA
GGACTATATAAAAACACCTTGTTATTTTTGCAATAAAGCGCTCTTTTGTC
CCCTTGGGAGAAGCGAAGAATCAAATGTGGCTGCTGCCGCTGTTGCTGCT
G back to topprotein sequence of jgi.p|Nanoce1779_2|597334 >mRNA_6557-protein ID=mRNA_6557-protein|Name=jgi.p|Nanoce1779_2|597334|organism=Nannochloropsis oceanica|type=polypeptide|length=477bp
MRAALLRIVVTTPRRALTRGSPVCLSDSSISRDSGITLPAPPPSLHQANN
HVTMPLHVFTTGSGKDKGSSSISSSSSNSNSSSIASPSTLMTPSHRGLAT
SAAAPGEAVLLKDEYGNMDASGQTYVVPHFTTESGVAMRDVEVRYNTFGH
LNEAKDNVLVVCHALTGNARLDTWWSSILGPGKAFDTDKYLVVCANILGS
CYGTTGPTSLDPATGRPYGVRFPQVTIRDTVALHIRMLKEALGARSVACV
VGGSLGGMQALEWVFLGNSNKNHSSNNNENEENFVRSAVVIACGARHTAW
QIGISETQRQAIYADPLWRGGEFDHTRPPLQGLAVARQIAMFSYRTPHGF
ENKFGRAQAEDGRFEVRRYLEYQGQKFLSRFDALTYVRLTEKMDSHDVGR
GRGGMEVALKGLRVPVLVLGIDSDVLYPLHEQEEMARLIPKGELRVVRSR
EGHDGFLLEQEQVGGAMKEFLKEHRL* back to topmRNA from alignment at scaffold_18:147324..149476+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6557 ID=mRNA_6557|Name=jgi.p|Nanoce1779_2|597334|organism=Nannochloropsis oceanica|type=mRNA|length=2153bp|location=Sequence derived from alignment at scaffold_18:147324..149476+ (Nannochloropsis oceanica)
CAGACAGGAAAGTCGACGCCACGCCAATGCTTGGTTGGTGTTCGGGGGCT
AGAGCATGAGGGCAGCATTGCTGCGTATTGTGGTCACAACCCCTCGACGA
GCTTTGACTCGCGGCAGTCCAGTTTGCCTGAGTGACAGTAGCATCAGCAG
GGACAGCGGCATCACGCTTCCCGCCCCACCACCAAGCCTCCATCAAGCGA
ATAACCACGTCACCATGCCCCTCCATGTGTTTACGACTGGCTCGGGCAAG
GATAAGGGCAGCAGCAGTATCAGCAGCAGCAGCAGCAACAGCAACAGTAG
CAGCATCGCGTCTCCTAGCACGCTAATGACTCCCTCCCACCGTGGGCTGG
CCACTTCGGCCGCCGCCCCGGGAGAAGCCGTGTTGCTCAAGGATGAATAC
GGCAACATGGATGCATCGGGACAGACATATGTGGTACCGCATTTCACGAC
GGAGAGCGGGTACGTGATTTTGCGGGGATGCAGGAGATGAAAAGGGGAAG
CGGATTGGGGGACGGGGGGAGGAAGGAATGACAGGACTGGGGGGGGGGGG
CTGGAGACACCGGCACTTTTTTGGTGATAATGTATGAGCAAGAGATAAAG
AGAGGGAGGAGAATTAGGGTCGCAGGGAAGGGAAAGAGCAAAAGAAAGCT
TAGTAATTCAAGGGCGCCGGTATCCGCAGAGCTACCACACCAATCTCACG
ATTCTCCCACTTCCATCCATCTGTCCTCCTCATTTTCCCCTTTCCTTCCC
AGCGTGGCCATGCGGGACGTGGAAGTACGCTACAACACCTTTGGGCACCT
GAACGAAGCGAAAGACAACGTCTTGGTTGTATGCCATGCCCTTACGGGGA
ATGCCCGGTTGGATACGTGGTGGTCCTCCATCCTGGGGCCCGGGAAAGCC
TTCGATACCGACAAGTACCTCGTTGTGTGCGCGAACATCTTGGGTACATA
TGGAGGAAGGGCAGGAAGGAGGGGAGGAGGGCAAGGAGCATTGGTGTAGG
AAAGACGTCAGCACGGCTTTGAACCTCGCAACGGCCAGCTGATACGAGGC
TCACAGCACCCACCACCCCTCCCTCCCTACCTCTCTCCCTCCCTCCAACC
AGGCTCCTGCTACGGCACTACCGGCCCCACGTCCCTCGATCCGGCGACGG
GCCGACCCTACGGTGTGCGCTTCCCCCAGGTGACTATCCGCGACACGGTG
GCCCTGCACATACGCATGTTGAAGGAGGCATTGGGTGCCCGTTCGGTTGC
CTGTGTGGTAGGAGGTTCCTTGGGAGGGATGCAAGCCCTGGAATGGGTCT
TCCTCGGTAACAGCAACAAAAATCACAGCAGCAACAACAATGAAAATGAG
GAGAATTTTGTGCGTTCTGCGGTGGTGATCGCGTGCGGGGCCCGTCACAC
GGCGTGGCAGATCGGCATCTCCGAGACGCAGCGCCAAGCCATTTACGCAG
ACCCCCTCTGGCGTGGGGGCGAATTCGATCACACTCGTCCCCCGTTGCAG
GGGCTGGCAGTGGCGCGGCAGATTGCCATGTTCTCCTACAGAACTCCCCA
TGGGTTCGAAAATAAATTCGGGAGGGCACAGGCGGAGGATGGGAGGTTTG
AGGTGAGGCGGTATTTGGAATACCAAGGACAGAAATTCTTGTCGCGATTC
GACGCCTTGACCTATGTGAGATTAACGGAAAAAATGGACTCTCATGATGT
GGGGAGGGGGAGGGGAGGCATGGAGGTGGCGCTGAAGGGCCTGCGGGTGC
CGGTGTTGGTGCTGGGGATTGACAGTGACGTCTTGTACCCCTTGCATGAA
CAGGAGGAGATGGCCCGGTTGATTCCGAAGGGAGAATTAAGGGTGGTAAG
GAGTAGGGAGGGGCATGACGGGTTTTTACTGGAGCAGGAGCAGGTGGGGG
GGGCGATGAAGGAGTTCTTGAAGGAGCATCGACTGTAGTGCGGGGCGAGG
AAGGGAAGGGAGGGAGGCGGTTAGGGGGGGAAGGAGGGTGGAGTTTGATG
AGATCGAGAACGAATGGTGCAAGCATGAGAGTGGGTGACGGGAAGATAGA
TAGGACTATATAAAAACACCTTGTTATTTTTGCAATAAAGCGCTCTTTTG
TCCCCTTGGGAGAAGCGAAGAATCAAATGTGGCTGCTGCCGCTGTTGCTG
CTG back to topCoding sequence (CDS) from alignment at scaffold_18:147324..149476+ >mRNA_6557 ID=mRNA_6557|Name=jgi.p|Nanoce1779_2|597334|organism=Nannochloropsis oceanica|type=CDS|length=4293bp|location=Sequence derived from alignment at scaffold_18:147324..149476+ (Nannochloropsis oceanica)
ATGAGGGCAGCATTGCTGCGTATTGTGGTCACAACCCCTCGACGAGCTTT
GACTCGCGGCAGTCCAGTTTGCCTGAGTGACAGTAGCATCAGCAGGGACA
GCGGCATCACGCTTCCCGCCCCACCACCAAGCCTCCATCAAGCGAATAAC
CACGTCACCATGCCCCTCCATGTGTTTACGACTGGCTCGGGCAAGGATAA
GGGCAGCAGCAGTATCAGCAGCAGCAGCAGCAACAGCAACAGTAGCAGCA
TCGCGTCTCCTAGCACGCTAATGACTCCCTCCCACCGTGGGCTGGCCACT
TCGGCCGCCGCCCCGGGAGAAGCCGTGTTGCTCAAGGATGAATACGGCAA
CATGGATGCATCGGGACAGACATATGTGGTACCGCATTTCACGACGGAGA
GCGGCGTGGCCATGCGGGACGTGGAAGTACGCTACAACACCTTTGGGCAC
CTGAACGAAGCGAAAGACAACGTCTTGGTTGTATGCCATGCCCTTACGGG
GAATGCCCGGTTGGATACGTGGTGGTCCTCCATCCTGGGGCCCGGGAAAG
CCTTCGATACCGACAAGTACCTCGTTGTGTGCGCGAACATCTTGGGCTCC
TGCTACGGCACTACCGGCCCCACGTCCCTCGATCCGGCGACGGGCCGACC
CTACGGTGTGCGCTTCCCCCAGGTGACTATCCGCGACACGGTGGCCCTGC
ACATACGCATGTTGAAGGAGGCATTGGGTGCCCGTTCGGTTGCCTGTGTG
GTAGGAGGTTCCTTGGGAGGGATGCAAGCCCTGGAATGGGTCTTCCTCGG
TAACAGCAACAAAAATCACAGCAGCAACAACAATGAAAATGAGGAGAATT
TTGTGCGTTCTGCGGTGGTGATCGCGTGCGGGGCCCGTCACACGGCGTGG
CAGATCGGCATCTCCGAGACGCAGCGCCAAGCCATTTACGCAGACCCCCT
CTGGCGTGGGGGCGAATTCGATCACACTCGTCCCCCGTTGCAGGGGCTGG
CAGTGGCGCGGCAGATTGCCATGTTCTCCTACAGAACTCCCCATGGGTTC
GAAAATAAATTCGGGAGGGCACAGGCGGAGGATGGGAGGTTTGAGGTGAG
GCGGTATTTGGAATACCAAGGACAGAAATTCTTGTCGCGATTCGACGCCT
TGACCTATGTGAGATTAACGGAAAAAATGGACTCTCATGATGTGGGGAGG
GGGAGGGGAGGCATGGAGGTGGCGCTGAAGGGCCTGCGGGTGCCGGTGTT
GGTGCTGGGGATTGACAGTGACGTCTTGTACCCCTTGCATGAACAGGAGG
AGATGGCCCGGTTGATTCCGAAGGGAGAATTAAGGGTGGTAAGGAGTAGG
GAGGGGCATGACGGGTTTTTACTGGAGCAGGAGCAGGTGGGGGGGGCGAT
GAAGGAGTTCTTGAAGGAGCATCGACTGTAGATGAGGGCAGCATTGCTGC
GTATTGTGGTCACAACCCCTCGACGAGCTTTGACTCGCGGCAGTCCAGTT
TGCCTGAGTGACAGTAGCATCAGCAGGGACAGCGGCATCACGCTTCCCGC
CCCACCACCAAGCCTCCATCAAGCGAATAACCACGTCACCATGCCCCTCC
ATGTGTTTACGACTGGCTCGGGCAAGGATAAGGGCAGCAGCAGTATCAGC
AGCAGCAGCAGCAACAGCAACAGTAGCAGCATCGCGTCTCCTAGCACGCT
AATGACTCCCTCCCACCGTGGGCTGGCCACTTCGGCCGCCGCCCCGGGAG
AAGCCGTGTTGCTCAAGGATGAATACGGCAACATGGATGCATCGGGACAG
ACATATGTGGTACCGCATTTCACGACGGAGAGCGGCGTGGCCATGCGGGA
CGTGGAAGTACGCTACAACACCTTTGGGCACCTGAACGAAGCGAAAGACA
ACGTCTTGGTTGTATGCCATGCCCTTACGGGGAATGCCCGGTTGGATACG
TGGTGGTCCTCCATCCTGGGGCCCGGGAAAGCCTTCGATACCGACAAGTA
CCTCGTTGTGTGCGCGAACATCTTGGGCTCCTGCTACGGCACTACCGGCC
CCACGTCCCTCGATCCGGCGACGGGCCGACCCTACGGTGTGCGCTTCCCC
CAGGTGACTATCCGCGACACGGTGGCCCTGCACATACGCATGTTGAAGGA
GGCATTGGGTGCCCGTTCGGTTGCCTGTGTGGTAGGAGGTTCCTTGGGAG
GGATGCAAGCCCTGGAATGGGTCTTCCTCGGTAACAGCAACAAAAATCAC
AGCAGCAACAACAATGAAAATGAGGAGAATTTTGTGCGTTCTGCGGTGGT
GATCGCGTGCGGGGCCCGTCACACGGCGTGGCAGATCGGCATCTCCGAGA
CGCAGCGCCAAGCCATTTACGCAGACCCCCTCTGGCGTGGGGGCGAATTC
GATCACACTCGTCCCCCGTTGCAGGGGCTGGCAGTGGCGCGGCAGATTGC
CATGTTCTCCTACAGAACTCCCCATGGGTTCGAAAATAAATTCGGGAGGG
CACAGGCGGAGGATGGGAGGTTTGAGGTGAGGCGGTATTTGGAATACCAA
GGACAGAAATTCTTGTCGCGATTCGACGCCTTGACCTATGTGAGATTAAC
GGAAAAAATGGACTCTCATGATGTGGGGAGGGGGAGGGGAGGCATGGAGG
TGGCGCTGAAGGGCCTGCGGGTGCCGGTGTTGGTGCTGGGGATTGACAGT
GACGTCTTGTACCCCTTGCATGAACAGGAGGAGATGGCCCGGTTGATTCC
GAAGGGAGAATTAAGGGTGGTAAGGAGTAGGGAGGGGCATGACGGGTTTT
TACTGGAGCAGGAGCAGGTGGGGGGGGCGATGAAGGAGTTCTTGAAGGAG
CATCGACTGTAGATGAGGGCAGCATTGCTGCGTATTGTGGTCACAACCCC
TCGACGAGCTTTGACTCGCGGCAGTCCAGTTTGCCTGAGTGACAGTAGCA
TCAGCAGGGACAGCGGCATCACGCTTCCCGCCCCACCACCAAGCCTCCAT
CAAGCGAATAACCACGTCACCATGCCCCTCCATGTGTTTACGACTGGCTC
GGGCAAGGATAAGGGCAGCAGCAGTATCAGCAGCAGCAGCAGCAACAGCA
ACAGTAGCAGCATCGCGTCTCCTAGCACGCTAATGACTCCCTCCCACCGT
GGGCTGGCCACTTCGGCCGCCGCCCCGGGAGAAGCCGTGTTGCTCAAGGA
TGAATACGGCAACATGGATGCATCGGGACAGACATATGTGGTACCGCATT
TCACGACGGAGAGCGGCGTGGCCATGCGGGACGTGGAAGTACGCTACAAC
ACCTTTGGGCACCTGAACGAAGCGAAAGACAACGTCTTGGTTGTATGCCA
TGCCCTTACGGGGAATGCCCGGTTGGATACGTGGTGGTCCTCCATCCTGG
GGCCCGGGAAAGCCTTCGATACCGACAAGTACCTCGTTGTGTGCGCGAAC
ATCTTGGGCTCCTGCTACGGCACTACCGGCCCCACGTCCCTCGATCCGGC
GACGGGCCGACCCTACGGTGTGCGCTTCCCCCAGGTGACTATCCGCGACA
CGGTGGCCCTGCACATACGCATGTTGAAGGAGGCATTGGGTGCCCGTTCG
GTTGCCTGTGTGGTAGGAGGTTCCTTGGGAGGGATGCAAGCCCTGGAATG
GGTCTTCCTCGGTAACAGCAACAAAAATCACAGCAGCAACAACAATGAAA
ATGAGGAGAATTTTGTGCGTTCTGCGGTGGTGATCGCGTGCGGGGCCCGT
CACACGGCGTGGCAGATCGGCATCTCCGAGACGCAGCGCCAAGCCATTTA
CGCAGACCCCCTCTGGCGTGGGGGCGAATTCGATCACACTCGTCCCCCGT
TGCAGGGGCTGGCAGTGGCGCGGCAGATTGCCATGTTCTCCTACAGAACT
CCCCATGGGTTCGAAAATAAATTCGGGAGGGCACAGGCGGAGGATGGGAG
GTTTGAGGTGAGGCGGTATTTGGAATACCAAGGACAGAAATTCTTGTCGC
GATTCGACGCCTTGACCTATGTGAGATTAACGGAAAAAATGGACTCTCAT
GATGTGGGGAGGGGGAGGGGAGGCATGGAGGTGGCGCTGAAGGGCCTGCG
GGTGCCGGTGTTGGTGCTGGGGATTGACAGTGACGTCTTGTACCCCTTGC
ATGAACAGGAGGAGATGGCCCGGTTGATTCCGAAGGGAGAATTAAGGGTG
GTAAGGAGTAGGGAGGGGCATGACGGGTTTTTACTGGAGCAGGAGCAGGT
GGGGGGGGCGATGAAGGAGTTCTTGAAGGAGCATCGACTGTAG back to top
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