jgi.p|Nanoce1779_2|544742, mRNA_6556 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|544742
Unique Name	mRNA_6556
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2490
Alignment location	scaffold_18:144779..147385 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	544828
Track	FilteredModels2
ProteinId	544742

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:144779..147385 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|544742	gene_6556	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|544742	mRNA_6556-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6556	CDS_6556	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:144779..147385-
coding sequence from alignment at scaffold_18:144779..147385-

mRNA sequence

>mRNA_6556 ID=mRNA_6556|Name=jgi.p|Nanoce1779_2|544742|organism=Nannochloropsis oceanica|type=mRNA|length=2490bp
CCCTCATGCTCTAGCCCCCGAACACCAACCAAGCATTGGCGTGGCGTCGA
CTTTCCTGTCTGGAGTCGCAGTGGGAGGGAAGGGGGGGGGCGTGGAAGGG
GACATGAGCGAGGATACGCCTCCGAGGAGGCTCCGACTGGGAGGAGTCCT
ACACGAGACGGCCGGTCCAGGTTGAACATTGTGCAGCCATACATGATGAC
CTCGTGACCAAAGCAGCTATGCAGACCAACGAAGCACTCCATCATCATCA
TAACGACGACGACAAGGTTCTACAGTAGCAGACTTCGCCCGCAGGCCAGG
AAGGACAAAGCCAGCATGCTGCACCGCCGGGACCGTGATCGTCGCCCGTC
CCAACGGCTTCTTCACCGTCCTTCATGTCACATGCGGCTAGCTATTCAAG
CAGAGCTGCTCCATAAACGTGCTCCTCTCTAACACAGATAACATGGCCCC
CCCTCCCCCTGCCACCGCCTCAGCCGCCGACGACGCACATGGTCACGTGG
GACACGTGGCATTGAACCGCATCCCGCATGGTGCACCCGTGCATCGCCGC
TTGGACAACCCGACCTTGACGGCCACCATGCCTCCGATGGTAGTGCCCAT
GTCATTGTACGCTGAGAACCGGCAGAAACTCTGCGCACGCCTCAAGAAGA
AGCTGGCCTCGACGACTTTCAAAAGAGCAATAGTGCTGATGGAGGGCGGG
AAAGAGGAGTATAGGTATGAATCCGACGCAGAGAAGATCTTTCGGCAGGA
GTCGTCGTTTGCGTACTTGTTTGGGGTGAAGGAGCCGGGGTTCTATGGGA
CGATCGATGTGGAGAGTGGGAAGACGACGTTGTACACGCCGAGGCTACCC
GTCGAGTATGCGGTGTGGATGGGTAAGATTCAGCCACCATCTCATTTTAA
GGCTCTGTATGAAGTGGACGAGGTGATGTTTGTGGATGAATTGGCAAAGC
ACCTAGTGGGAGGGAAGGAGGGAGAGGCGGGGGACGAGGTTGCGCGCCCA
GATCTTCTGCTGCTCAACCAGGGCCTGAATACCGACAGTGGGAATATGGC
AAAGCCTGCTTTTGTGGAGGGGGTGACGCCTTCGCCGCCGACGGCGAAAG
AGGGAGGGAAGAAAGGTGGGTCGGTGGAGTGTGATTACGAGATGCTTTAC
CCTGAGTTGGTGGAATGCCGCGTGTTCAAGTCGGAGGCGGAGTTGCAGGT
GATGCAGTACGTGAACGATATAAGTAGCGATGCTCATTTGGCGGTGATGG
GACAGGTGAAAGTAGGAATGACTGAGTACCAGTTGGAGTCGCTGTTTCTC
CACCACGGCTACTTCTTTGGTGGTTGTCGGCATGTGGCCTACACGTCTAT
ATGTGGCTGTGGACCGAATGCGGCGACGCTGCATTACGGGCATGCGGGAG
CTCCGAACGATAGGTTGATCAGGGAGGGGGATATGCTATTGTTAGACATG
GGCGCGGAATATAAGTGCTATACATCGGACATCACGTGTTCATTCCCGGC
GACGGGGAGATTTTCTGCGGACCAAAGGATGATATTCGAGTGCGTGCAGG
CCATGCAGTTTGCGGTGCTGGATGCATTGAAGCCAGGCGTAGCATGGGTG
GATATGCATGCGCTTGCGTATCGCGTGGGGTTGGAAAAGCTAGTGGAAGG
CGGATTGCTCAAGGGGGGGGTGGAGGAGATGATGAAGGAGAATTTAATGA
GCTTCTTCATGCCGCACGGTCTGGGTCATTTCATGGGCTTGGATGTGCAT
GATGTTGGGGGATTCCCGCCTTCGTTGGGGCTGAAGCGGGATGAGAGGAA
AGGGTTCAAGAATCTGCGGACGGGGAGGAGGATGGAGGTGGGGATGGTTA
TCACCGTGGAGCCGGGGGTGTACTTCATCGATTTGTTGATGGACGAGCTG
GTGGGCGATGAAAGGGTCAATAAATTTGTCAATGTTGAGATGTTGGAGAG
TCGGTTTAGGGGCTTCGGTGGGGTGAGGCTGGAGGATGACGTGGTGATTG
TGGAAGGGGGGGTGAGGAATATGACGAGGGCCCCGCGAACGGTGGAGGAC
GTGGAAGCCGTTATGGCGGGCAAGATTACGACAAAAGAGGAGTTGTTCAA
AAAGTGATGAGGAGGGGGAGGACGTGGAAGCCGTTATGGCGGGCAAGATT
ACGATGAAAGAGGAGTTGTTCAAAAAGTGATGAGGAGGGAGGGCGGCAGG
GAAGGGGGGTGGGGGACAGAGAAAAACGGGAGAAGTAATGAAGAGTGCGT
GGATGAGAGGGCGAGGGAGGGAGAGTGGGTGTTGGTGTGAGAGTGAGTGA
GAGTGAGAGGCGCAGAGACAGGGAAAGACAGAGAGAAAGAGACAAAGGGA
GACAGAAAACGTGAGAGAAAGACAGGGGGACAGAAAGAAACAGAGAGATG
GCAAATACAAATGAGAAAACGACGGGAGAGAAATAAGAGAAAATATGCAA
TACTAATCAACGAAAGACAAACCTATCCAGCTATTTCCTG

protein sequence of jgi.p|Nanoce1779_2|544742

>mRNA_6556-protein ID=mRNA_6556-protein|Name=jgi.p|Nanoce1779_2|544742|organism=Nannochloropsis oceanica|type=polypeptide|length=555bp
MAPPPPATASAADDAHGHVGHVALNRIPHGAPVHRRLDNPTLTATMPPMV
VPMSLYAENRQKLCARLKKKLASTTFKRAIVLMEGGKEEYRYESDAEKIF
RQESSFAYLFGVKEPGFYGTIDVESGKTTLYTPRLPVEYAVWMGKIQPPS
HFKALYEVDEVMFVDELAKHLVGGKEGEAGDEVARPDLLLLNQGLNTDSG
NMAKPAFVEGVTPSPPTAKEGGKKGGSVECDYEMLYPELVECRVFKSEAE
LQVMQYVNDISSDAHLAVMGQVKVGMTEYQLESLFLHHGYFFGGCRHVAY
TSICGCGPNAATLHYGHAGAPNDRLIREGDMLLLDMGAEYKCYTSDITCS
FPATGRFSADQRMIFECVQAMQFAVLDALKPGVAWVDMHALAYRVGLEKL
VEGGLLKGGVEEMMKENLMSFFMPHGLGHFMGLDVHDVGGFPPSLGLKRD
ERKGFKNLRTGRRMEVGMVITVEPGVYFIDLLMDELVGDERVNKFVNVEM
LESRFRGFGGVRLEDDVVIVEGGVRNMTRAPRTVEDVEAVMAGKITTKEE
LFKK*

mRNA from alignment at scaffold_18:144779..147385-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6556 ID=mRNA_6556|Name=jgi.p|Nanoce1779_2|544742|organism=Nannochloropsis oceanica|type=mRNA|length=2607bp|location=Sequence derived from alignment at scaffold_18:144779..147385- (Nannochloropsis oceanica)
CCCTCATGCTCTAGCCCCCGAACACCAACCAAGCATTGGCGTGGCGTCGA
CTTTCCTGTCTGGAGTCGCAGTGGGAGGGAAGGGGGGGGGCGTGGAAGGG
GACATGAGCGAGGATACGCCTCCGAGGAGGCTCCGACTGGGAGGAGTCCT
ACACGAGACGGCCGGTCCAGGTTGAACATTGTGCAGCCATACATGATGAC
CTCGTGACCAAAGCAGCTATGCAGACCAACGAAGCACTCCATCATCATCA
TAACGACGACGACAAGGTTCTACAGTAGCAGACTTCGCCCGCAGGCCAGG
AAGGACAAAGCCAGCATGCTGCACCGCCGGGACCGTGATCGTCGCCCGTC
CCAACGGCTTCTTCACCGTCCTTCATGTCACATGCGGCTAGCTATTCAAG
CAGAGCTGCTCCATAAACGTGCTCCTCTCTAACACAGGCAGGTTAAGGAG
CAAGAAGACTGTGGGTTAGCGCTTGGGTGTGCGGCTTATAATTTCCAATA
TCCCTCGCCTCATCGTTTCCGCCTCCTCACCCCTTCCCCGCCTCCCATGA
ACAGATAACATGGCCCCCCCTCCCCCTGCCACCGCCTCAGCCGCCGACGA
CGCACATGGTCACGTGGGACACGTGGCATTGAACCGCATCCCGCATGGTG
CACCCGTGCATCGCCGCTTGGACAACCCGACCTTGACGGCCACCATGCCT
CCGATGGTAGTGCCCATGTCATTGTACGCTGAGAACCGGCAGAAACTCTG
CGCACGCCTCAAGAAGAAGCTGGCCTCGACGACTTTCAAAAGAGCAATAG
TGCTGATGGAGGGCGGGAAAGAGGAGTATAGGTATGAATCCGACGCAGAG
AAGATCTTTCGGCAGGAGTCGTCGTTTGCGTACTTGTTTGGGGTGAAGGA
GCCGGGGTTCTATGGGACGATCGATGTGGAGAGTGGGAAGACGACGTTGT
ACACGCCGAGGCTACCCGTCGAGTATGCGGTGTGGATGGGTAAGATTCAG
CCACCATCTCATTTTAAGGCTCTGTATGAAGTGGACGAGGTGATGTTTGT
GGATGAATTGGCAAAGCACCTAGTGGGAGGGAAGGAGGGAGAGGCGGGGG
ACGAGGTTGCGCGCCCAGATCTTCTGCTGCTCAACCAGGGCCTGAATACC
GACAGTGGGAATATGGCAAAGCCTGCTTTTGTGGAGGGGGTGACGCCTTC
GCCGCCGACGGCGAAAGAGGGAGGGAAGAAAGGTGGGTCGGTGGAGTGTG
ATTACGAGATGCTTTACCCTGAGTTGGTGGAATGCCGCGTGTTCAAGTCG
GAGGCGGAGTTGCAGGTGATGCAGTACGTGAACGATATAAGTAGCGATGC
TCATTTGGCGGTGATGGGACAGGTGAAAGTAGGAATGACTGAGTACCAGT
TGGAGTCGCTGTTTCTCCACCACGGCTACTTCTTTGGTGGTTGTCGGCAT
GTGGCCTACACGTCTATATGTGGCTGTGGACCGAATGCGGCGACGCTGCA
TTACGGGCATGCGGGAGCTCCGAACGATAGGTTGATCAGGGAGGGGGATA
TGCTATTGTTAGACATGGGCGCGGAATATAAGTGCTATACATCGGACATC
ACGTGTTCATTCCCGGCGACGGGGAGATTTTCTGCGGACCAAAGGATGAT
ATTCGAGTGCGTGCAGGCCATGCAGTTTGCGGTGCTGGATGCATTGAAGC
CAGGCGTAGCATGGGTGGATATGCATGCGCTTGCGTATCGCGTGGGGTTG
GAAAAGCTAGTGGAAGGCGGATTGCTCAAGGGGGGGGTGGAGGAGATGAT
GAAGGAGAATTTAATGAGCTTCTTCATGCCGCACGGTCTGGGTCATTTCA
TGGGCTTGGATGTGCATGATGTTGGGGGATTCCCGCCTTCGTTGGGGCTG
AAGCGGGATGAGAGGAAAGGGTTCAAGAATCTGCGGACGGGGAGGAGGAT
GGAGGTGGGGATGGTTATCACCGTGGAGCCGGGGGTGTACTTCATCGATT
TGTTGATGGACGAGCTGGTGGGCGATGAAAGGGTCAATAAATTTGTCAAT
GTTGAGATGTTGGAGAGTCGGTTTAGGGGCTTCGGTGGGGTGAGGCTGGA
GGATGACGTGGTGATTGTGGAAGGGGGGGTGAGGAATATGACGAGGGCCC
CGCGAACGGTGGAGGACGTGGAAGCCGTTATGGCGGGCAAGATTACGACA
AAAGAGGAGTTGTTCAAAAAGTGATGAGGAGGGGGAGGACGTGGAAGCCG
TTATGGCGGGCAAGATTACGATGAAAGAGGAGTTGTTCAAAAAGTGATGA
GGAGGGAGGGCGGCAGGGAAGGGGGGTGGGGGACAGAGAAAAACGGGAGA
AGTAATGAAGAGTGCGTGGATGAGAGGGCGAGGGAGGGAGAGTGGGTGTT
GGTGTGAGAGTGAGTGAGAGTGAGAGGCGCAGAGACAGGGAAAGACAGAG
AGAAAGAGACAAAGGGAGACAGAAAACGTGAGAGAAAGACAGGGGGACAG
AAAGAAACAGAGAGATGGCAAATACAAATGAGAAAACGACGGGAGAGAAA
TAAGAGAAAATATGCAATACTAATCAACGAAAGACAAACCTATCCAGCTA
TTTCCTG

Coding sequence (CDS) from alignment at scaffold_18:144779..147385-

>mRNA_6556 ID=mRNA_6556|Name=jgi.p|Nanoce1779_2|544742|organism=Nannochloropsis oceanica|type=CDS|length=1665bp|location=Sequence derived from alignment at scaffold_18:144779..147385- (Nannochloropsis oceanica)
ATGGCCCCCCCTCCCCCTGCCACCGCCTCAGCCGCCGACGACGCACATGG
TCACGTGGGACACGTGGCATTGAACCGCATCCCGCATGGTGCACCCGTGC
ATCGCCGCTTGGACAACCCGACCTTGACGGCCACCATGCCTCCGATGGTA
GTGCCCATGTCATTGTACGCTGAGAACCGGCAGAAACTCTGCGCACGCCT
CAAGAAGAAGCTGGCCTCGACGACTTTCAAAAGAGCAATAGTGCTGATGG
AGGGCGGGAAAGAGGAGTATAGGTATGAATCCGACGCAGAGAAGATCTTT
CGGCAGGAGTCGTCGTTTGCGTACTTGTTTGGGGTGAAGGAGCCGGGGTT
CTATGGGACGATCGATGTGGAGAGTGGGAAGACGACGTTGTACACGCCGA
GGCTACCCGTCGAGTATGCGGTGTGGATGGGTAAGATTCAGCCACCATCT
CATTTTAAGGCTCTGTATGAAGTGGACGAGGTGATGTTTGTGGATGAATT
GGCAAAGCACCTAGTGGGAGGGAAGGAGGGAGAGGCGGGGGACGAGGTTG
CGCGCCCAGATCTTCTGCTGCTCAACCAGGGCCTGAATACCGACAGTGGG
AATATGGCAAAGCCTGCTTTTGTGGAGGGGGTGACGCCTTCGCCGCCGAC
GGCGAAAGAGGGAGGGAAGAAAGGTGGGTCGGTGGAGTGTGATTACGAGA
TGCTTTACCCTGAGTTGGTGGAATGCCGCGTGTTCAAGTCGGAGGCGGAG
TTGCAGGTGATGCAGTACGTGAACGATATAAGTAGCGATGCTCATTTGGC
GGTGATGGGACAGGTGAAAGTAGGAATGACTGAGTACCAGTTGGAGTCGC
TGTTTCTCCACCACGGCTACTTCTTTGGTGGTTGTCGGCATGTGGCCTAC
ACGTCTATATGTGGCTGTGGACCGAATGCGGCGACGCTGCATTACGGGCA
TGCGGGAGCTCCGAACGATAGGTTGATCAGGGAGGGGGATATGCTATTGT
TAGACATGGGCGCGGAATATAAGTGCTATACATCGGACATCACGTGTTCA
TTCCCGGCGACGGGGAGATTTTCTGCGGACCAAAGGATGATATTCGAGTG
CGTGCAGGCCATGCAGTTTGCGGTGCTGGATGCATTGAAGCCAGGCGTAG
CATGGGTGGATATGCATGCGCTTGCGTATCGCGTGGGGTTGGAAAAGCTA
GTGGAAGGCGGATTGCTCAAGGGGGGGGTGGAGGAGATGATGAAGGAGAA
TTTAATGAGCTTCTTCATGCCGCACGGTCTGGGTCATTTCATGGGCTTGG
ATGTGCATGATGTTGGGGGATTCCCGCCTTCGTTGGGGCTGAAGCGGGAT
GAGAGGAAAGGGTTCAAGAATCTGCGGACGGGGAGGAGGATGGAGGTGGG
GATGGTTATCACCGTGGAGCCGGGGGTGTACTTCATCGATTTGTTGATGG
ACGAGCTGGTGGGCGATGAAAGGGTCAATAAATTTGTCAATGTTGAGATG
TTGGAGAGTCGGTTTAGGGGCTTCGGTGGGGTGAGGCTGGAGGATGACGT
GGTGATTGTGGAAGGGGGGGTGAGGAATATGACGAGGGCCCCGCGAACGG
TGGAGGACGTGGAAGCCGTTATGGCGGGCAAGATTACGACAAAAGAGGAG
TTGTTCAAAAAGTGA

Synonyms

Publications