jgi.p|Nanoce1779_2|597331, mRNA_6555 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597331
Unique NamemRNA_6555
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1137
Alignment locationscaffold_18:143655..144791 +

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Properties
Property NameValue
TranscriptId597417
TrackFilteredModels2
ProteinId597331
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:143655..144791 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597331gene_6555Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597331mRNA_6555-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6555CDS_6555Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6555 ID=mRNA_6555|Name=jgi.p|Nanoce1779_2|597331|organism=Nannochloropsis oceanica|type=mRNA|length=1137bp
AACAACAGGAAAGATAAAGACATACAATAACCTTGGTTGCTGCATCACTA
GGGGCTTCCATCGCACAACGGAGCCATGCCTCGCTTCAACCTCCTGCCTC
CCGCAAGTCTCCTGATGCTCCTCCTCCTGTTGGGACCATCACCCATATCC
CAAGCCTTCCCGATCAGCGGGTACTTTTCACGAAGACAACGCGCGTTTCT
ATGGCGTGCTCAAGCCGGGGCGGAATGCTTTGACGATGATAATGGCTCTC
TTCCTTTATTCCGCTTGTACTTCCAAGGCGAGTTCGACAACGCGGCGCAG
GTGGTGTCGGAGCGAGCACAAGGCATAGAGGCGGGACCTGCCGGTGGACA
TGAACAGATTCATTGCATCTTGACGCCTCTAGATCTACCCGCAGGAAGTT
TTGGTGGTGATGCGCAATTTTTCTTGGGCGCCACCTACTATTTTGATGGC
CGACCCGAGGCTGTCTTCCGCTGCCGTGTCTACAGCTTCCACCCTCCCCC
TCCGGCCGCCGACGACGATGAAGATGAGGAGTGCGGGGCATCATTTTTTT
TACCTCCTCCGCCTTTTCTGGAAATGCGGCTACATCGATTCACCCCGGAA
TTCGAGGGTATGATGAGGCAGAATAAATATGACTTGAATTTGTTGCCTCA
GACACAGGTAGAGCTGGCAGAGGTGGTGGAGGAATTGGAAGGTTGTAGCG
TTATTTGGAGCGTCTCCAACTTTAAGACAAGTGACGAAGAAGATGATGGG
GTGAGTTTTCGAGGGGTGATGCGCGACGGTTTTTGTTTGGTTCAGTCGCA
GAGAGATGCGGGTATTCAGTTGAAGATTGAGGATGATTTGCTGTTGACGA
GGGAAATGTTGTGTGTGAACGACCGCGGAACAGATTGTGTGACAGGTAAG
ATCATATATGGTAATTATAGAAGCTTGCCTTACAGAATGGAGCGACGACA
ACGACCGTAGGATGGTACAGATGAAGAACAACGCGAAGAAGAAGACGAGG
AGGATAAGGAGACGGAGGATGAGGGGGGGGAGGAGTTAGAAGGATAAATA
GTGTATTACTAAAGTAGGTACAATGATTAACAATGACTTTAAAGGAATGG
ACGGTGCAATAGAGGGGGGTAACTCAGGAAATAGCTG
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protein sequence of jgi.p|Nanoce1779_2|597331

>mRNA_6555-protein ID=mRNA_6555-protein|Name=jgi.p|Nanoce1779_2|597331|organism=Nannochloropsis oceanica|type=polypeptide|length=295bp
MPRFNLLPPASLLMLLLLLGPSPISQAFPISGYFSRRQRAFLWRAQAGAE
CFDDDNGSLPLFRLYFQGEFDNAAQVVSERAQGIEAGPAGGHEQIHCILT
PLDLPAGSFGGDAQFFLGATYYFDGRPEAVFRCRVYSFHPPPPAADDDED
EECGASFFLPPPPFLEMRLHRFTPEFEGMMRQNKYDLNLLPQTQVELAEV
VEELEGCSVIWSVSNFKTSDEEDDGVSFRGVMRDGFCLVQSQRDAGIQLK
IEDDLLLTREMLCVNDRGTDCVTGKIIYGNYRSLPYRMERRQRP*
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mRNA from alignment at scaffold_18:143655..144791+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6555 ID=mRNA_6555|Name=jgi.p|Nanoce1779_2|597331|organism=Nannochloropsis oceanica|type=mRNA|length=1137bp|location=Sequence derived from alignment at scaffold_18:143655..144791+ (Nannochloropsis oceanica)
AACAACAGGAAAGATAAAGACATACAATAACCTTGGTTGCTGCATCACTA
GGGGCTTCCATCGCACAACGGAGCCATGCCTCGCTTCAACCTCCTGCCTC
CCGCAAGTCTCCTGATGCTCCTCCTCCTGTTGGGACCATCACCCATATCC
CAAGCCTTCCCGATCAGCGGGTACTTTTCACGAAGACAACGCGCGTTTCT
ATGGCGTGCTCAAGCCGGGGCGGAATGCTTTGACGATGATAATGGCTCTC
TTCCTTTATTCCGCTTGTACTTCCAAGGCGAGTTCGACAACGCGGCGCAG
GTGGTGTCGGAGCGAGCACAAGGCATAGAGGCGGGACCTGCCGGTGGACA
TGAACAGATTCATTGCATCTTGACGCCTCTAGATCTACCCGCAGGAAGTT
TTGGTGGTGATGCGCAATTTTTCTTGGGCGCCACCTACTATTTTGATGGC
CGACCCGAGGCTGTCTTCCGCTGCCGTGTCTACAGCTTCCACCCTCCCCC
TCCGGCCGCCGACGACGATGAAGATGAGGAGTGCGGGGCATCATTTTTTT
TACCTCCTCCGCCTTTTCTGGAAATGCGGCTACATCGATTCACCCCGGAA
TTCGAGGGTATGATGAGGCAGAATAAATATGACTTGAATTTGTTGCCTCA
GACACAGGTAGAGCTGGCAGAGGTGGTGGAGGAATTGGAAGGTTGTAGCG
TTATTTGGAGCGTCTCCAACTTTAAGACAAGTGACGAAGAAGATGATGGG
GTGAGTTTTCGAGGGGTGATGCGCGACGGTTTTTGTTTGGTTCAGTCGCA
GAGAGATGCGGGTATTCAGTTGAAGATTGAGGATGATTTGCTGTTGACGA
GGGAAATGTTGTGTGTGAACGACCGCGGAACAGATTGTGTGACAGGTAAG
ATCATATATGGTAATTATAGAAGCTTGCCTTACAGAATGGAGCGACGACA
ACGACCGTAGGATGGTACAGATGAAGAACAACGCGAAGAAGAAGACGAGG
AGGATAAGGAGACGGAGGATGAGGGGGGGGAGGAGTTAGAAGGATAAATA
GTGTATTACTAAAGTAGGTACAATGATTAACAATGACTTTAAAGGAATGG
ACGGTGCAATAGAGGGGGGTAACTCAGGAAATAGCTG
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Coding sequence (CDS) from alignment at scaffold_18:143655..144791+

>mRNA_6555 ID=mRNA_6555|Name=jgi.p|Nanoce1779_2|597331|organism=Nannochloropsis oceanica|type=CDS|length=885bp|location=Sequence derived from alignment at scaffold_18:143655..144791+ (Nannochloropsis oceanica)
ATGCCTCGCTTCAACCTCCTGCCTCCCGCAAGTCTCCTGATGCTCCTCCT
CCTGTTGGGACCATCACCCATATCCCAAGCCTTCCCGATCAGCGGGTACT
TTTCACGAAGACAACGCGCGTTTCTATGGCGTGCTCAAGCCGGGGCGGAA
TGCTTTGACGATGATAATGGCTCTCTTCCTTTATTCCGCTTGTACTTCCA
AGGCGAGTTCGACAACGCGGCGCAGGTGGTGTCGGAGCGAGCACAAGGCA
TAGAGGCGGGACCTGCCGGTGGACATGAACAGATTCATTGCATCTTGACG
CCTCTAGATCTACCCGCAGGAAGTTTTGGTGGTGATGCGCAATTTTTCTT
GGGCGCCACCTACTATTTTGATGGCCGACCCGAGGCTGTCTTCCGCTGCC
GTGTCTACAGCTTCCACCCTCCCCCTCCGGCCGCCGACGACGATGAAGAT
GAGGAGTGCGGGGCATCATTTTTTTTACCTCCTCCGCCTTTTCTGGAAAT
GCGGCTACATCGATTCACCCCGGAATTCGAGGGTATGATGAGGCAGAATA
AATATGACTTGAATTTGTTGCCTCAGACACAGGTAGAGCTGGCAGAGGTG
GTGGAGGAATTGGAAGGTTGTAGCGTTATTTGGAGCGTCTCCAACTTTAA
GACAAGTGACGAAGAAGATGATGGGGTGAGTTTTCGAGGGGTGATGCGCG
ACGGTTTTTGTTTGGTTCAGTCGCAGAGAGATGCGGGTATTCAGTTGAAG
ATTGAGGATGATTTGCTGTTGACGAGGGAAATGTTGTGTGTGAACGACCG
CGGAACAGATTGTGTGACAGGTAAGATCATATATGGTAATTATAGAAGCT
TGCCTTACAGAATGGAGCGACGACAACGACCGTAG
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Synonyms
Publications