jgi.p|Nanoce1779_2|597328, mRNA_6554 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597328
Unique NamemRNA_6554
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length593
Alignment locationscaffold_18:142578..143507 -

Link to JBrowse

Properties
Property NameValue
TranscriptId597414
TrackFilteredModels2
ProteinId597328
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:142578..143507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597328gene_6554Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597328mRNA_6554-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6554CDS_6554Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6554 ID=mRNA_6554|Name=jgi.p|Nanoce1779_2|597328|organism=Nannochloropsis oceanica|type=mRNA|length=593bp
CAGAGAGTACTACGATAGCCATGCGGCGCGCTGTTGGCACCATATTGGTA
GACGTCTCTGCCTCTGCGACCAGAAGACCTGCGAATGCTACAGTAGCTAT
CTCCTCCCTTGGCCGACCTCTCTACCCAACTACATCTCGCTTCCGGCGGT
CTTTGGCCTCTGATGTCGACGGCAACAGTGCCGAGTCCCTGGCTCGGGAG
GAACGTATGCGTACATTACTAACAGAGCACTTCAAGCCGACAAATCTCCT
GATTCAGGACGTCTCCGGCGGGTGCGGAGCGATGTACAACATGGAAGTTG
AGTCAGAGTTGTTCAAGGGCAAGACGTTAGTGGCGCAGCACAGGATGGTC
AATCAGGTACTGGCGAAGGAGATTTCCGAGATGCACGGTTTGTCGCTTAA
AACACGCGCGCCCAAGAAGCAATAGAATCGGAGGGTAACAACAACTGGGG
AAATGGGAAAAGTAAATAGGGGCAAACGAATGGGATCACGCACACATATG
ACAAGACCGACATGGCCGACGAGAAGGAAGAGAAGGAAGGATTGAGGTGA
TATCGATGGCAATGATAATGGTGGCCACGATGATGCGGTGCTG
back to top

protein sequence of jgi.p|Nanoce1779_2|597328

>mRNA_6554-protein ID=mRNA_6554-protein|Name=jgi.p|Nanoce1779_2|597328|organism=Nannochloropsis oceanica|type=polypeptide|length=135bp
MRRAVGTILVDVSASATRRPANATVAISSLGRPLYPTTSRFRRSLASDVD
GNSAESLAREERMRTLLTEHFKPTNLLIQDVSGGCGAMYNMEVESELFKG
KTLVAQHRMVNQVLAKEISEMHGLSLKTRAPKKQ*
back to top

mRNA from alignment at scaffold_18:142578..143507-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6554 ID=mRNA_6554|Name=jgi.p|Nanoce1779_2|597328|organism=Nannochloropsis oceanica|type=mRNA|length=930bp|location=Sequence derived from alignment at scaffold_18:142578..143507- (Nannochloropsis oceanica)
CAGAGAGTACTACGATAGCCATGCGGCGCGCTGTTGGCACCATATTGGTA
GACGTCTCTGCCTCTGCGACCAGAAGACCTGCGAATGCTACAGTAGCTAT
CTCCTCCCTTGGCCGACCTCTCTACCCAACTACATCTCGCTTCCGGCGGT
CTTTGGCCTCTGATGTCGACGGCAACAGTGCCGAGTCCCTGGCTCGGGAG
GAACGTATGCGTACATTACTAACAGAGCACTTCAAGCCGACAAATCTCCT
GATTCAGGACGTCTCCGGTACGTGACATGGGCAGGGGGCAAGGGCGGAGA
CGTGCGTGGTGGGACGGAAGGACTGGGAGGAAATGAGGCAGGGAGGATCG
ATTCATGGCCCAAGAAGTGGACTTGCACACAGACATCCGCGCTATCATTC
TATTTGTCAACACGCTCATTATTGAAATAGGCGGGTGCGGAGCGATGTAC
AACATGGAAGTTGAGTCAGAGTTGTTCAAGGGCAAGACGTTAGTGGCGCA
GCACAGGATGGTCAATCAGGTACGCGTATGCGGGAGCGGAGAAGCATCGT
ACAACGAAAGGGCAGGTGATAAATAATTCGGGAAAGTTATCCGATAGAGC
AAGAGAAGACATCGCGTCACCGGTGACATGTTCTCTGTGGCTCACACATA
CGTATTCTCCTCCCCGAAACCATCCACACGGCAACTTACTCAGGTACTGG
CGAAGGAGATTTCCGAGATGCACGGTTTGTCGCTTAAAACACGCGCGCCC
AAGAAGCAATAGAATCGGAGGGTAACAACAACTGGGGAAATGGGAAAAGT
AAATAGGGGCAAACGAATGGGATCACGCACACATATGACAAGACCGACAT
GGCCGACGAGAAGGAAGAGAAGGAAGGATTGAGGTGATATCGATGGCAAT
GATAATGGTGGCCACGATGATGCGGTGCTG
back to top

Coding sequence (CDS) from alignment at scaffold_18:142578..143507-

>mRNA_6554 ID=mRNA_6554|Name=jgi.p|Nanoce1779_2|597328|organism=Nannochloropsis oceanica|type=CDS|length=1215bp|location=Sequence derived from alignment at scaffold_18:142578..143507- (Nannochloropsis oceanica)
GTACTGGCGAAGGAGATTTCCGAGATGCACGGTTTGTCGCTTAAAACACG
CGCGCCCAAGAAGCAATAGGCGGGTGCGGAGCGATGTACAACATGGAAGT
TGAGTCAGAGTTGTTCAAGGGCAAGACGTTAGTGGCGCAGCACAGGATGG
TCAATCAGATGCGGCGCGCTGTTGGCACCATATTGGTAGACGTCTCTGCC
TCTGCGACCAGAAGACCTGCGAATGCTACAGTAGCTATCTCCTCCCTTGG
CCGACCTCTCTACCCAACTACATCTCGCTTCCGGCGGTCTTTGGCCTCTG
ATGTCGACGGCAACAGTGCCGAGTCCCTGGCTCGGGAGGAACGTATGCGT
ACATTACTAACAGAGCACTTCAAGCCGACAAATCTCCTGATTCAGGACGT
CTCCGGTACTGGCGAAGGAGATTTCCGAGATGCACGGTTTGTCGCTTAAA
ACACGCGCGCCCAAGAAGCAATAGGCGGGTGCGGAGCGATGTACAACATG
GAAGTTGAGTCAGAGTTGTTCAAGGGCAAGACGTTAGTGGCGCAGCACAG
GATGGTCAATCAGATGCGGCGCGCTGTTGGCACCATATTGGTAGACGTCT
CTGCCTCTGCGACCAGAAGACCTGCGAATGCTACAGTAGCTATCTCCTCC
CTTGGCCGACCTCTCTACCCAACTACATCTCGCTTCCGGCGGTCTTTGGC
CTCTGATGTCGACGGCAACAGTGCCGAGTCCCTGGCTCGGGAGGAACGTA
TGCGTACATTACTAACAGAGCACTTCAAGCCGACAAATCTCCTGATTCAG
GACGTCTCCGGTACTGGCGAAGGAGATTTCCGAGATGCACGGTTTGTCGC
TTAAAACACGCGCGCCCAAGAAGCAATAGGCGGGTGCGGAGCGATGTACA
ACATGGAAGTTGAGTCAGAGTTGTTCAAGGGCAAGACGTTAGTGGCGCAG
CACAGGATGGTCAATCAGATGCGGCGCGCTGTTGGCACCATATTGGTAGA
CGTCTCTGCCTCTGCGACCAGAAGACCTGCGAATGCTACAGTAGCTATCT
CCTCCCTTGGCCGACCTCTCTACCCAACTACATCTCGCTTCCGGCGGTCT
TTGGCCTCTGATGTCGACGGCAACAGTGCCGAGTCCCTGGCTCGGGAGGA
ACGTATGCGTACATTACTAACAGAGCACTTCAAGCCGACAAATCTCCTGA
TTCAGGACGTCTCCG
back to top
Synonyms
Publications