jgi.p|Nanoce1779_2|597324, mRNA_6553 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597324
Unique NamemRNA_6553
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length939
Alignment locationscaffold_18:141328..142577 +

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Properties
Property NameValue
TranscriptId597410
TrackFilteredModels2
ProteinId597324
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:141328..142577 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597324gene_6553Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597324mRNA_6553-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6553CDS_6553Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6553 ID=mRNA_6553|Name=jgi.p|Nanoce1779_2|597324|organism=Nannochloropsis oceanica|type=mRNA|length=939bp
AGTTCAATCAACATGAAGGCCATTCAAAGTATGTTGCCGGGCGCCCAGGA
AGAGACGGTATCAGAGGAAGTGTGTGCCATGTGCCCATCCCTGACGTACC
AACAGCGCATGATTGGTTTCGTCGGCTGCTTTTGCCTGGGCTACCTGCTC
TCCTTCATCGGCACCCTCTCCCTCATCTCCATGACCACGGACGGCATTCG
GAACTTTGCCGCGCTCTACGTCGTGGGGAACATCATTGCCTTATGCTCCA
CCGGTTTCTTGATTGGACCCAAGAATCAGTGCAAGAAGATGTTTGATAAA
ACCCGGCGGTATTCCGCCATCCTTTATATCATCATGTTAATCACCGTTTT
CGCGGTAGCCCTGGCAGGTCAGAACGTTTTCCTGGTCCTGTTTCTGTTGA
TCATTCAGGTGTTATGTGCGGTGTGGTACACGCTGTCGTACGTACCATTT
GGGAGGCAGGCGGTGGTTGGGTGCATGCAGAACACGTTGTTCAAGCCGTG
CCCAGGGACGATTGCGGGGATGGTCTAAATGGAGGGCTAGGAGGGAGGGT
TTGAAGGGAGGGACGGAAAGAGGGAAGACAAAAGAATTCAAAAACTGCAG
TGTTTTTATATTGTAATTTTATCTTCACTCTCTCCTGTCATGAGGGAGTC
CAGCCGTCCTCGAGATGGCAGTGAGGAATGATGGCACCAGACCAATTCTC
AATACACCACTGAGAGAGATTGAAGAAAGAAAAGAAAAAGAGAAGAGAAG
TGTTTTATTCATTCATCAAAGACATCGAAGATGATGGAGACGACGAGGAA
AGAAAAAGAGGAAGTGGTAGCGTGGGTGTGTGAATCAAAAGGGCAGAAAA
CATATGGAGAGGCTGGGCAAAGCGCGCGACAAAGCAAGAGCGAGAAACAT
CGAAAGCCGTCAACTTGAGCTTTCAAAAGCTAGTTATAG
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protein sequence of jgi.p|Nanoce1779_2|597324

>mRNA_6553-protein ID=mRNA_6553-protein|Name=jgi.p|Nanoce1779_2|597324|organism=Nannochloropsis oceanica|type=polypeptide|length=172bp
MKAIQSMLPGAQEETVSEEVCAMCPSLTYQQRMIGFVGCFCLGYLLSFIG
TLSLISMTTDGIRNFAALYVVGNIIALCSTGFLIGPKNQCKKMFDKTRRY
SAILYIIMLITVFAVALAGQNVFLVLFLLIIQVLCAVWYTLSYVPFGRQA
VVGCMQNTLFKPCPGTIAGMV*
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mRNA from alignment at scaffold_18:141328..142577+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6553 ID=mRNA_6553|Name=jgi.p|Nanoce1779_2|597324|organism=Nannochloropsis oceanica|type=mRNA|length=1250bp|location=Sequence derived from alignment at scaffold_18:141328..142577+ (Nannochloropsis oceanica)
AGTTCAATCAACATGAAGGCCATTCAAAGTATGTTGCCGGGCGCCCAGGA
AGAGACGGTATCAGAGGAAGTGTGTGCCATGTGCCCATCCCTGACGTACC
AACAGCGCATGATTGGTTTCGTCGGCTGCTTTTGCCTGGGCTACCTGCTC
TCCTTCATCGTAAGTAGTGGATAGTCCCACGCACCTTTCACTGTGGTGCT
TGATTGCGTGTTCTTTTTTGTGGTTGTGTCCTGTATATCTTGCGCGCGAA
TGTTTTCCCACTGCCCCTCTGAATTGATCTCTGGGTCGTGCCATCCCGCT
CGTCCCCCCCACCCTTTGCTTCCTACCCTAACATGCCGGTTTCTGCCTAC
TTTCCTCGAAGCTGATAGCGCAGCTAGTCTGTCGATCTTTCCCTTCTGTT
TGACTTGCTGCCATTCCTTTGTCTCATCATCCTCCCTCCCCCGCTCCCCT
CCTCCTTCCCTATCTACCAGGGCACCCTCTCCCTCATCTCCATGACCACG
GACGGCATTCGGAACTTTGCCGCGCTCTACGTCGTGGGGAACATCATTGC
CTTATGCTCCACCGGTTTCTTGATTGGACCCAAGAATCAGTGCAAGAAGA
TGTTTGATAAAACCCGGCGGTATTCCGCCATCCTTTATATCATCATGTTA
ATCACCGTTTTCGCGGTAGCCCTGGCAGGTCAGAACGTTTTCCTGGTCCT
GTTTCTGTTGATCATTCAGGTGTTATGTGCGGTGTGGTACACGCTGTCGT
ACGTACCATTTGGGAGGCAGGCGGTGGTTGGGTGCATGCAGAACACGTTG
TTCAAGCCGTGCCCAGGGACGATTGCGGGGATGGTCTAAATGGAGGGCTA
GGAGGGAGGGTTTGAAGGGAGGGACGGAAAGAGGGAAGACAAAAGAATTC
AAAAACTGCAGTGTTTTTATATTGTAATTTTATCTTCACTCTCTCCTGTC
ATGAGGGAGTCCAGCCGTCCTCGAGATGGCAGTGAGGAATGATGGCACCA
GACCAATTCTCAATACACCACTGAGAGAGATTGAAGAAAGAAAAGAAAAA
GAGAAGAGAAGTGTTTTATTCATTCATCAAAGACATCGAAGATGATGGAG
ACGACGAGGAAAGAAAAAGAGGAAGTGGTAGCGTGGGTGTGTGAATCAAA
AGGGCAGAAAACATATGGAGAGGCTGGGCAAAGCGCGCGACAAAGCAAGA
GCGAGAAACATCGAAAGCCGTCAACTTGAGCTTTCAAAAGCTAGTTATAG
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Coding sequence (CDS) from alignment at scaffold_18:141328..142577+

>mRNA_6553 ID=mRNA_6553|Name=jgi.p|Nanoce1779_2|597324|organism=Nannochloropsis oceanica|type=CDS|length=1032bp|location=Sequence derived from alignment at scaffold_18:141328..142577+ (Nannochloropsis oceanica)
ATGAAGGCCATTCAAAGTATGTTGCCGGGCGCCCAGGAAGAGACGGTATC
AGAGGAAGTGTGTGCCATGTGCCCATCCCTGACGTACCAACAGCGCATGA
TTGGTTTCGTCGGCTGCTTTTGCCTGGGCTACCTGCTCTCCTTCATCGGC
ACCCTCTCCCTCATCTCCATGACCACGGACGGCATTCGGAACTTTGCCGC
GCTCTACGTCGTGGGGAACATCATTGCCTTATGCTCCACCGGTTTCTTGA
TTGGACCCAAGAATCAGTGCAAGAAGATGTTTGATAAAACCCGGCGGTAT
TCCGCCATCCTTTATATCATCATGTTAATCACCGTTTTCGCGGTAGCCCT
GGCAGGTCAGAACGTTTTCCTGGTCCTGTTTCTGTTGATCATTCAGGTGT
TATGTGCGGTGTGGTACACGCTGTCGTACGTACCATTTGGGAGGCAGGCG
GTGGTTGGGTGCATGCAGAACACGTTGTTCAAGCCGTGCCCAGGGACGAT
TGCGGGGATGGTCTAAATGAAGGCCATTCAAAGTATGTTGCCGGGCGCCC
AGGAAGAGACGGTATCAGAGGAAGTGTGTGCCATGTGCCCATCCCTGACG
TACCAACAGCGCATGATTGGTTTCGTCGGCTGCTTTTGCCTGGGCTACCT
GCTCTCCTTCATCGGCACCCTCTCCCTCATCTCCATGACCACGGACGGCA
TTCGGAACTTTGCCGCGCTCTACGTCGTGGGGAACATCATTGCCTTATGC
TCCACCGGTTTCTTGATTGGACCCAAGAATCAGTGCAAGAAGATGTTTGA
TAAAACCCGGCGGTATTCCGCCATCCTTTATATCATCATGTTAATCACCG
TTTTCGCGGTAGCCCTGGCAGGTCAGAACGTTTTCCTGGTCCTGTTTCTG
TTGATCATTCAGGTGTTATGTGCGGTGTGGTACACGCTGTCGTACGTACC
ATTTGGGAGGCAGGCGGTGGTTGGGTGCATGCAGAACACGTTGTTCAAGC
CGTGCCCAGGGACGATTGCGGGGATGGTCTAA
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Synonyms
Publications