jgi.p|Nanoce1779_2|597322, mRNA_6552 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|597322
Unique Name	mRNA_6552
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1876
Alignment location	scaffold_18:138650..140547 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	597408
Track	FilteredModels2
ProteinId	597322

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:138650..140547 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597322	gene_6552	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597322	mRNA_6552-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6552	CDS_6552	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:138650..140547-
coding sequence from alignment at scaffold_18:138650..140547-

mRNA sequence

>mRNA_6552 ID=mRNA_6552|Name=jgi.p|Nanoce1779_2|597322|organism=Nannochloropsis oceanica|type=mRNA|length=1876bp
AGGTCACAAGGATCGAGATCAGGATCGCCACCTCAGAAGTAATCAGTACC
TCGACAACGAAAAAGCAATGATCTCCAAGGTCATAACCACTAGCGGCGGC
ACAACGCAAAGACCGTCAGCACGAAGACGCCACGGTTTGGCAGTGCTGAT
GGTCCTCACAAGCATGGGACTGACGCAAACACAAGCATTTCTCATGCCAC
CGCCAGGCGTGGCCGCCCGACGCGCCGGAACAAACAAGCCCGAGTCCACC
ACCACGACCCTGCGAGCCTCCTCCTCCATCTCAGCCCGCATGGAGGCACC
CTTCCCTGTTATCAAAGAAAGCAGCACCACCATCAGTAGCTCTGCCCGCC
GGGCTCGACGAAGGCAAAGCTCTGCTTCGACCGCCGCAACTGTCCCACCT
CCGTCCTCCTCCATAAGCAGTCAACAACAACTTTCACGAAGACAAACGTC
AAGTCAACAACAAGACAATTCAGAACTACTACGACGACAACAGGTTCGGA
AACAGTCCGAACCCGGTACTACCCAAGCCGACGCCCTCATGCATGGCCGC
GTCAGGGCCGTTCAACGAGCTGCCGTCGCCATCCAAAAACATCGAGCACT
GGCTAAGGAGCTCGGACGGGCACCCTCCCCCTCCGAATGGGGTGAAGCTC
TCGGAGGAGTTACAGAAGAGAGCTTGAGAGCTGTCTTGGAGCAAGGAACA
GTAGCGAGGGCAGCCTTAGTGAAAGGGTGGGACGGTTTAGTAGCAAAGTT
TGTTGGCAAATTCGCGATGAGACTCTCGGATTCGGAGCTGCAGGACTTGG
TGGTTGAGGGACAGCTGGGCGTGGTGGAGGCAGCAGTACGATTTGAGGGG
GGGCAAGGGGCAGGGTTTAAGACGTATGTGTATTACTGGGTGAGGAAGAG
GGTGATGGACGCGGCGGCGATGTATGATAGGTCAACTTTTACCGGGTTGC
ATGAGCAGAGGCAGGCGTCACACATTTGGAAGGTGGTGGAGGCACACGAG
AAGGAAAGTGGGGGAAACGTGATGAGCAAGGAGGAGATTGCGGCAAAGGT
GGGCTTGCCTGTCGCGAGGGTGGAAGAGTTGGGTCGGAAGGGACAGCGAT
ATGGATTGATCGGAGCGTCAGGGAGAGAGGGAGTGATGGCGGTGGATACG
GCGCAGGAGCAAGGGGGGGGGGCAGGGAGGGGTGTTGGAGAGCATGCGAT
CAGGGGGGCGCTGGCAGCATTGCCACGAGAGGAGAGGACGGTGTTGAGTT
TAAGGTTGGGATTAGAGGATGGCCAGCCGAAGGGATGGGAGGAGATTGTG
AGGACGATGGAGGGATGCAGTTTGAGTTACTTGAGGAAAGTAGAATCGAA
GGCAAAGATCATGCTGAGGAGGAACGTGGACGTGGTGAAGCTAATTCATC
GAAGGCCGGCGTCGTTTGATGAGGTGCTTTTCGCGGGGGGGGAGTAAGGG
TGCGGACGAGAGAGGGAAGTAGTGAGGAGGATCAGTGAAAGAGTTCGTGT
AAAAACGAGTTGAATAGAAATGCAATGGAATGTATAGAATGAGTAGAAGA
GGCACGGAAATGCGACGATGATGAAAAAAGAAGGAAGACAAATAAAAATA
GACATGAAATTCTAAAGCGAGAACCTGGCATTTCCAGGACGCGGATAACG
AGGACGAGGACGAGGACGAGGACGACAGCAGCAGTGAAGGGCTGAAAGGG
TGACATAAGGTGATATAAGAGGAAATGAGAAAAAGCTTCCTCAAAGGCGA
TGGGACACGAACACAATCACCAATACCACGTCAAAAGCTCCCTCGAAAAA
AACGACCCACTTTGTACCACCCTATGTTTGAATTGAGAGCGAGGGAAGGA
GAACGTCAGCGGCTCCACCCTCGACA

protein sequence of jgi.p|Nanoce1779_2|597322

>mRNA_6552-protein ID=mRNA_6552-protein|Name=jgi.p|Nanoce1779_2|597322|organism=Nannochloropsis oceanica|type=polypeptide|length=460bp
MISKVITTSGGTTQRPSARRRHGLAVLMVLTSMGLTQTQAFLMPPPGVAA
RRAGTNKPESTTTTLRASSSISARMEAPFPVIKESSTTISSSARRARRRQ
SSASTAATVPPPSSSISSQQQLSRRQTSSQQQDNSELLRRQQVRKQSEPG
TTQADALMHGRVRAVQRAAVAIQKHRALAKELGRAPSPSEWGEALGGVTE
ESLRAVLEQGTVARAALVKGWDGLVAKFVGKFAMRLSDSELQDLVVEGQL
GVVEAAVRFEGGQGAGFKTYVYYWVRKRVMDAAAMYDRSTFTGLHEQRQA
SHIWKVVEAHEKESGGNVMSKEEIAAKVGLPVARVEELGRKGQRYGLIGA
SGREGVMAVDTAQEQGGGAGRGVGEHAIRGALAALPREERTVLSLRLGLE
DGQPKGWEEIVRTMEGCSLSYLRKVESKAKIMLRRNVDVVKLIHRRPASF
DEVLFAGGE*

mRNA from alignment at scaffold_18:138650..140547-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6552 ID=mRNA_6552|Name=jgi.p|Nanoce1779_2|597322|organism=Nannochloropsis oceanica|type=mRNA|length=1898bp|location=Sequence derived from alignment at scaffold_18:138650..140547- (Nannochloropsis oceanica)
AGGTCACAAGGATCGAGATCAGGATCGCCACCTCAGAAGTAATCAGTACC
TCGACAACGAAAAAGCAATGATCTCCAAGGTCATAACCACTAGCGGCGGC
ACAACGCAAAGACCGTCAGCACGAAGACGCCACGGTTTGGCAGTGCTGAT
GGTCCTCACAAGCATGGGACTGACGCAAACACAAGCATTTCTCATGCCAC
CGCCAGGCGTGGCCGCCCGACGCGCCGGAACAAACAAGCCCGAGTCCACC
ACCACGACCCTGCGAGCCTCCTCCTCCATCTCAGCCCGCATGGAGGCACC
CTTCCCTGTTATCAAAGAAAGCAGCACCACCATCAGTAGCTCTGCCCGCC
GGGCTCGACGAAGGCAAAGCTCTGCTTCGACCGCCGCAACTGTCCCACCT
CCGTCCTCCTCCATAAGCAGTCAACAACAACTTTCACGAAGACAAACGTC
AAGTCAACAACAAGACAATTCAGAACTACTACGACGACAACAGGTTCGGA
AACAGTCCGAACCCGGTACTACCCAAGCCGACGCCCTCATGCATGGCCGC
GTCAGGGCCGTTCAACGAGCTGCCGTCGCCATCCAAAAACATCGAGCACT
GGCTAAGGAGCTCGGACGGGCACCCTCCCCCTCCGAATGGGGTGAAGCTC
TCGGAGGAGTTACAGAAGAGAGCTTGAGAGCTGTCTTGGAGCAAGGAACA
GTAGCGAGGGCAGCCTTAGTGAAAGGGTGGGACGGTTTAGTAGCAAAGTT
TGTTGGCAAATTCGCGATGAGACTCTCGGATTCGGAGCTGCAGGACTTGG
TGGTTGAGGGACAGCTGGGCGTGGTGGAGGCAGCAGTACGATTTGAGGGG
GGGCAAGGGGCAGGGTTTAAGACGTATGTGTATTACTGGGTGAGGAAGAG
GGTGATGGACGCGGCGGCGATGTATGATAGGTCAACTTTTACCGGGTTGC
ATGAGCAGAGGCAGGCGTCACACATTTGGAAGGTGGTGGAGGCACACGAG
AAGGAAAGTGGGGGAAACGTGATGAGCAAGGAGGAGATTGCGGCAAAGGT
GGGCTTGCCTGTCGCGAGGGTGGAAGAGTTGGGTCGGAAGGGACAGCGAT
ATGGATTGATCGGAGCGTCAGGGAGAGAGGGAGTGATGGCGGTGGATACG
GCGCAGGAGCAAGGGGGGGGGGCAGGGAGGGGTGTTGGAGAGCATGTACC
TGGCTGAAGTTGAGGAGGCGATCAGGGGGGCGCTGGCAGCATTGCCACGA
GAGGAGAGGACGGTGTTGAGTTTAAGGTTGGGATTAGAGGATGGCCAGCC
GAAGGGATGGGAGGAGATTGTGAGGACGATGGAGGGATGCAGTTTGAGTT
ACTTGAGGAAAGTAGAATCGAAGGCAAAGATCATGCTGAGGAGGAACGTG
GACGTGGTGAAGCTAATTCATCGAAGGCCGGCGTCGTTTGATGAGGTGCT
TTTCGCGGGGGGGGAGTAAGGGTGCGGACGAGAGAGGGAAGTAGTGAGGA
GGATCAGTGAAAGAGTTCGTGTAAAAACGAGTTGAATAGAAATGCAATGG
AATGTATAGAATGAGTAGAAGAGGCACGGAAATGCGACGATGATGAAAAA
AGAAGGAAGACAAATAAAAATAGACATGAAATTCTAAAGCGAGAACCTGG
CATTTCCAGGACGCGGATAACGAGGACGAGGACGAGGACGAGGACGACAG
CAGCAGTGAAGGGCTGAAAGGGTGACATAAGGTGATATAAGAGGAAATGA
GAAAAAGCTTCCTCAAAGGCGATGGGACACGAACACAATCACCAATACCA
CGTCAAAAGCTCCCTCGAAAAAAACGACCCACTTTGTACCACCCTATGTT
TGAATTGAGAGCGAGGGAAGGAGAACGTCAGCGGCTCCACCCTCGACA

Coding sequence (CDS) from alignment at scaffold_18:138650..140547-

>mRNA_6552 ID=mRNA_6552|Name=jgi.p|Nanoce1779_2|597322|organism=Nannochloropsis oceanica|type=CDS|length=2760bp|location=Sequence derived from alignment at scaffold_18:138650..140547- (Nannochloropsis oceanica)
GCGATCAGGGGGGCGCTGGCAGCATTGCCACGAGAGGAGAGGACGGTGTT
GAGTTTAAGGTTGGGATTAGAGGATGGCCAGCCGAAGGGATGGGAGGAGA
TTGTGAGGACGATGGAGGGATGCAGTTTGAGTTACTTGAGGAAAGTAGAA
TCGAAGGCAAAGATCATGCTGAGGAGGAACGTGGACGTGGTGAAGCTAAT
TCATCGAAGGCCGGCGTCGTTTGATGAGGTGCTTTTCGCGGGGGGGGAGT
AAATGATCTCCAAGGTCATAACCACTAGCGGCGGCACAACGCAAAGACCG
TCAGCACGAAGACGCCACGGTTTGGCAGTGCTGATGGTCCTCACAAGCAT
GGGACTGACGCAAACACAAGCATTTCTCATGCCACCGCCAGGCGTGGCCG
CCCGACGCGCCGGAACAAACAAGCCCGAGTCCACCACCACGACCCTGCGA
GCCTCCTCCTCCATCTCAGCCCGCATGGAGGCACCCTTCCCTGTTATCAA
AGAAAGCAGCACCACCATCAGTAGCTCTGCCCGCCGGGCTCGACGAAGGC
AAAGCTCTGCTTCGACCGCCGCAACTGTCCCACCTCCGTCCTCCTCCATA
AGCAGTCAACAACAACTTTCACGAAGACAAACGTCAAGTCAACAACAAGA
CAATTCAGAACTACTACGACGACAACAGGTTCGGAAACAGTCCGAACCCG
GTACTACCCAAGCCGACGCCCTCATGCATGGCCGCGTCAGGGCCGTTCAA
CGAGCTGCCGTCGCCATCCAAAAACATCGAGCACTGGCTAAGGAGCTCGG
ACGGGCACCCTCCCCCTCCGAATGGGGTGAAGCTCTCGGAGGAGTTACAG
AAGAGAGCTTGAGAGCTGTCTTGGAGCAAGGAACAGTAGCGAGGGCAGCC
TTAGTGAAAGGGTGGGACGGTTTAGTAGCAAAGTTTGTTGGCAAATTCGC
GATGAGACTCTCGGATTCGGAGCTGCAGGACTTGGTGGTTGAGGGACAGC
TGGGCGTGGTGGAGGCAGCAGTACGATTTGAGGGGGGGCAAGGGGCAGGG
TTTAAGACGTATGTGTATTACTGGGTGAGGAAGAGGGTGATGGACGCGGC
GGCGATGTATGATAGGTCAACTTTTACCGGGTTGCATGAGCAGAGGCAGG
CGTCACACATTTGGAAGGTGGTGGAGGCACACGAGAAGGAAAGTGGGGGA
AACGTGATGAGCAAGGAGGAGATTGCGGCAAAGGTGGGCTTGCCTGTCGC
GAGGGTGGAAGAGTTGGGTCGGAAGGGACAGCGATATGGATTGATCGGAG
CGTCAGGGAGAGAGGGAGTGATGGCGGTGGATACGGCGCAGGAGCAAGGG
GGGGGGGCAGGGAGGGGTGTTGGAGAGCATGCGATCAGGGGGGCGCTGGC
AGCATTGCCACGAGAGGAGAGGACGGTGTTGAGTTTAAGGTTGGGATTAG
AGGATGGCCAGCCGAAGGGATGGGAGGAGATTGTGAGGACGATGGAGGGA
TGCAGTTTGAGTTACTTGAGGAAAGTAGAATCGAAGGCAAAGATCATGCT
GAGGAGGAACGTGGACGTGGTGAAGCTAATTCATCGAAGGCCGGCGTCGT
TTGATGAGGTGCTTTTCGCGGGGGGGGAGTAAATGATCTCCAAGGTCATA
ACCACTAGCGGCGGCACAACGCAAAGACCGTCAGCACGAAGACGCCACGG
TTTGGCAGTGCTGATGGTCCTCACAAGCATGGGACTGACGCAAACACAAG
CATTTCTCATGCCACCGCCAGGCGTGGCCGCCCGACGCGCCGGAACAAAC
AAGCCCGAGTCCACCACCACGACCCTGCGAGCCTCCTCCTCCATCTCAGC
CCGCATGGAGGCACCCTTCCCTGTTATCAAAGAAAGCAGCACCACCATCA
GTAGCTCTGCCCGCCGGGCTCGACGAAGGCAAAGCTCTGCTTCGACCGCC
GCAACTGTCCCACCTCCGTCCTCCTCCATAAGCAGTCAACAACAACTTTC
ACGAAGACAAACGTCAAGTCAACAACAAGACAATTCAGAACTACTACGAC
GACAACAGGTTCGGAAACAGTCCGAACCCGGTACTACCCAAGCCGACGCC
CTCATGCATGGCCGCGTCAGGGCCGTTCAACGAGCTGCCGTCGCCATCCA
AAAACATCGAGCACTGGCTAAGGAGCTCGGACGGGCACCCTCCCCCTCCG
AATGGGGTGAAGCTCTCGGAGGAGTTACAGAAGAGAGCTTGAGAGCTGTC
TTGGAGCAAGGAACAGTAGCGAGGGCAGCCTTAGTGAAAGGGTGGGACGG
TTTAGTAGCAAAGTTTGTTGGCAAATTCGCGATGAGACTCTCGGATTCGG
AGCTGCAGGACTTGGTGGTTGAGGGACAGCTGGGCGTGGTGGAGGCAGCA
GTACGATTTGAGGGGGGGCAAGGGGCAGGGTTTAAGACGTATGTGTATTA
CTGGGTGAGGAAGAGGGTGATGGACGCGGCGGCGATGTATGATAGGTCAA
CTTTTACCGGGTTGCATGAGCAGAGGCAGGCGTCACACATTTGGAAGGTG
GTGGAGGCACACGAGAAGGAAAGTGGGGGAAACGTGATGAGCAAGGAGGA
GATTGCGGCAAAGGTGGGCTTGCCTGTCGCGAGGGTGGAAGAGTTGGGTC
GGAAGGGACAGCGATATGGATTGATCGGAGCGTCAGGGAGAGAGGGAGTG
ATGGCGGTGGATACGGCGCAGGAGCAAGGGGGGGGGGCAGGGAGGGGTGT
TGGAGAGCAT

Synonyms

Publications