jgi.p|Nanoce1779_2|627101, mRNA_655 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|627101
Unique Name	mRNA_655
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2424
Alignment location	scaffold_2:115315..117985 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	627187
Track	FilteredModels2
ProteinId	627101

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:115315..117985 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|627101	gene_655	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|627101	mRNA_655-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_655	CDS_655	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:115315..117985-
coding sequence from alignment at scaffold_2:115315..117985-

mRNA sequence

>mRNA_655 ID=mRNA_655|Name=jgi.p|Nanoce1779_2|627101|organism=Nannochloropsis oceanica|type=mRNA|length=2424bp
TCGACATCCCCCGGGGGGATCTGGGCGTCGAGGCCATGGTAGCAGACGTC
ACGAATTAAAAAACCGATGGACCCCATCCCGCTGGAGCGCCTCAATATAC
CGATGTCGTCGAGTTTCTGGGTCTTCCCAGCTGCGACTGCCGCGTCTGGA
TCGTGTTGAGGCTGGCCAGAGATAATGGGGTGGTGGGGAGGTTTTTCTGT
CGAACTTGACTCGGAGGCACTGTATGTATAAGCGTAGCTGCCCAAATTCG
CCCTGCTTTCTTTTCACCATACCATAAGCAGAAACTCGACCGTGAAAGCA
TCTCATACTACCTACATATTCTACCAATGAAGTAGATGGTGATGGGCAGG
AAGCGCGGGCGTCCGCCCAAAGTCGCCGCGTCCAGCAGCAACCGGGCAGT
GCCTGATTCCCCTTCCTCCTCCTCCTGCTCCTCTTCCTCCTCCAGCTCCA
GCTCCCACCTCACACCTTCGCAAACCGAGACTGCCATGCTTCTAGCCCTG
CGCACAGGTGGCCATCTCGGGTGGGGCAAGCCCAAAGACGAACCGTGGTG
GCCTTGCATTGCTGCGCGCTCGTACACGGTCCTCCATCACTTCACCAGCA
CGCAAGAGCCCCGCGTCCCCCTGGGAAAAGGACGAGTATTAGCTTACTTC
CTCGGAGATGATACCTACGACATCCTGGACGAAGGTTGGTTTGAGGTGGG
TTACATCTTGCGGAAACCCACAAAAACCCAGATTGTGGCGCGACCGGAGT
ACGCCGAGGGAACGGTGGTAGGTGATAAATTGCTGGCACGGATTGAAGCT
TTGGACGAGGAGGAGGGAATGAAACTCCGCGGGCTTTTGAGCAGGGGGGT
AGGTAGAATGGTCCAGGTGTATGTGGAGGGGAAGCAAGCAGCCGAGACAG
GGGCAGCTGGAGGAGGAGGGGAAGGAGGAGATGAGAGTGATGAGTTGGGA
AGCCCTGCGTGTTTTATGGCTGATACTTGGTGGCCAGCCGTAGCGGTGGA
CTCGTGGGAAGTCGGGGAGAGAGCAAGATTAGGGCTGGCGATACCCCAGC
GGGAACTTAGTCGAGGAGAAGCCCTTGTATTTAAACTGGGCAGTTGGGTG
CCACCATCGCAGAGGTGGGATGTCGTGAGGCGCTGTAGCCCTTATGCTAG
TAGCAGCAGCAGCAGCAGCAGCGGCGGCGGCGGCGGTAGAATGTTGGGTG
CGGGGGAGGGAGGAGATTTCAATAAATGCATGTTGGAGGCGGCGAAGACG
GAAGCGAAGGCTTTGGTGGCTCCACCGATGGATGGGGAGACAAGGCGGTC
CCGGATGGGGAGAGGATTTGTGTTTTCGAAGGGTGAGGAGGAGGAGGAAG
AGGAGGGAGGAGGGGAGGATGTAGAGTCAATGATGGAAGGGAAACGACAA
CGGGGGAAGAGAAAGGGAGGGCGGGGAGGAGATGGGGGAGGAGAAGAAGA
AGGATAAGGTGGAGATGGATGTAAAGAAGCCAATGTTAACGATTCGGTTC
AAGACCACTTCGAGTGGTGCAGCAGCTGCTGCTGCTGCCGCTCCTCCTCC
TTCTCTTCCCGCGGTACCATTGAAGAAGCGACACAAGGGTTGCCCGCCTA
CCAGGGGCGGTGAGGCTCTCTTCAAGAACAAAGAAGAGGAGGTGGAAGAG
GAGAAAGAGGATGAAGACAAGGGTAACGTCACCTCCAAAATCAAGAACAG
GCTTCTCGCGGATCCCCCCTCCATCTCCACCACCACCACCTGCCAATCCC
TCCCTCCCTCCCGCCCTCTCACTCCTGAAGAGGTCGAAAAAATACGTCGT
CTAGCGGAGGGACTCTTGTTCATGAACGAGATTGACAGGGTCCAGAGCGG
CCGCTCCCTCCGGCATGACTTGAACGCCCTTCGACTTTTTATCAGTCGAG
GGAAGGAGATGACGCAATACCATTTGATGCGGTTGGAGATGGGTTTGCGA
GCGTACGTGGGTCGAATGCGGGCGCAGCTCTTGCGAGCAAAAAGGGAGTT
TGGAAGGTTGCAGCGGACGCTACGGAAGACACGGCAGCAGCAGCAGCAGG
AGGAGCAGCAGCAGCGCGATACGGTCCCTTTGGATGCGTTACCGCATGAA
GGGGAGGAGGGCGGGACGGAGGAACAGAAGGAGGAGGGTATGAAGATCAG
AGCGGCGGCGTTGTTTCGGGTGGGGAAGGAAGTGACGGAAGATCAAATCG
CTGCGGCGGAGCACTTATTGAGAGCCTGCGAGGATTTCAGGCAGAGGTTG
CTGAGGAAAGTGCAGCGCCAGCAACAGCAGCAGCGGCGACAGCAGCGTCA
GCAGCGGGGTGGCAAGAGAGGGGGAGGGAGAAGGGGAGGAGAGAGGGAGG
AGGTGAATCGACGGAAGTCGCTGGCGGCGCAAAAGTTTTTTTTTGGAAAA
GAATGCTGGAGCCCAGTGTATTGA

protein sequence of jgi.p|Nanoce1779_2|627101

>mRNA_655-protein ID=mRNA_655-protein|Name=jgi.p|Nanoce1779_2|627101|organism=Nannochloropsis oceanica|type=polypeptide|length=374bp
MVMGRKRGRPPKVAASSSNRAVPDSPSSSSCSSSSSSSSSHLTPSQTETA
MLLALRTGGHLGWGKPKDEPWWPCIAARSYTVLHHFTSTQEPRVPLGKGR
VLAYFLGDDTYDILDEGWFEVGYILRKPTKTQIVARPEYAEGTVVGDKLL
ARIEALDEEEGMKLRGLLSRGVGRMVQVYVEGKQAAETGAAGGGGEGGDE
SDELGSPACFMADTWWPAVAVDSWEVGERARLGLAIPQRELSRGEALVFK
LGSWVPPSQRWDVVRRCSPYASSSSSSSSGGGGGRMLGAGEGGDFNKCML
EAAKTEAKALVAPPMDGETRRSRMGRGFVFSKGEEEEEEEGGGEDVESMM
EGKRQRGKRKGGRGGDGGGEEEG*

mRNA from alignment at scaffold_2:115315..117985-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_655 ID=mRNA_655|Name=jgi.p|Nanoce1779_2|627101|organism=Nannochloropsis oceanica|type=mRNA|length=2671bp|location=Sequence derived from alignment at scaffold_2:115315..117985- (Nannochloropsis oceanica)
TCGACATCCCCCGGGGGGATCTGGGCGTCGAGGCCATGGTAGCAGACGTC
ACGAATTAAAAAACCGATGGACCCCATCCCGCTGGAGCGCCTCAATATAC
CGATGTCGTCGAGTTTCTGGGTCTTCCCAGCTGCGACTGCCGCGTCTGGA
TCGTGTTGAGGCTGGCCAGAGATAATGGGGTGGTGGGGAGGTTTTTCTGT
CGAACTTGACTCGGAGGCACTGTATGTATAAGCGTAGCTGCCCAAATTCG
CCCTGCTTTCTTTTCACCATACCATAAGCAGAAACTCGACCGTGAAAGCA
TCTCATACTACCTACATATTCTACCAATGAAGTAGATGGTGATGGGCAGG
AAGCGCGGGCGTCCGCCCAAAGTCGCCGCGTCCAGCAGCAACCGGGCAGT
GCCTGATTCCCCTTCCTCCTCCTCCTGCTCCTCTTCCTCCTCCAGCTCCA
GCTCCCACCTCACACCTTCGCAAACCGAGACTGCCATGCTTCTAGCCCTG
CGCACAGGTGGCCATCTCGGGTGGGGCAAGCCCAAAGACGAACCGTGGTG
GCCTTGCATTGCTGCGCGCTCGTACACGGTCCTCCATCACTTCACCAGCA
CGCAAGAGCCCCGCGTCCCCCTGGGAAAAGGACGAGTATTAGCTTACTTC
CTCGGAGATGATACCTACGACATCCTGGACGAAGGTTGGTTTGAGGTGGG
TTACATCTTGCGGAAACCCACAAAAACCCAGATTGTGGCGCGACCGGAGT
ACGCCGAGGGAACGGTGGTAGGTGATAAATTGCTGGCACGGATTGAAGCT
TTGGACGAGGAGGAGGGAATGAAACTCCGCGGGCTTTTGAGCAGGGGGGT
AGGTAGAATGGTCCAGGTGTATGTGGAGGGGAAGCAAGCAGCCGAGACAG
GGGCAGCTGGAGGAGGAGGGGAAGGAGGAGATGAGAGTGATGAGTTGGGA
AGCCCTGCGTGTTTTATGGCTGATACTTGGTGGCCAGCCGTAGCGGTGGA
CTCGTGGGAAGTCGGGGAGAGAGCAAGATTAGGGCTGGCGATACCCCAGC
GGGAACTTAGTCGAGGAGAAGCCCTTGTATTTAAACTGGGCAGTTGGGTG
CCACCATCGCAGAGGTGGGATGTCGTGAGGCGCTGTAGCCCTTATGCTAG
TAGCAGCAGCAGCAGCAGCAGCGGCGGCGGCGGCGGTAGAATGTTGGGTG
CGGGGGAGGGAGGAGATTTCAATAAATGCATGTTGGAGGCGGCGAAGACG
GAAGCGAAGGCTTTGGTGGCTCCACCGATGGATGGGGAGACAAGGCGGTC
CCGGATGGGGAGAGGATTTGTGTTTTCGAAGGGTGAGGAGGAGGAGGAAG
AGGAGGGAGGAGGGGAGGATGTAGAGTCAATGATGGAAGGGAAACGACAA
CGGGGGAAGAGAAAGGGAGGGCGGGGAGGAGATGGGGGAGGAGAAGAAGA
AGGATAAGGTGGAGATGGATGTAAAGAAGCCAATGTTAACGATTCGGTTC
AAGACCACTTCGAGTGGTGCAGCAGCTGCTGCTGCTGCCGCTCCTCCTCC
TTCTCTTCCCGCGGTACCATTGAAGAAGCGACACAAGGGTTGCCCGCCTA
CCAGGGGCGGTGAGGCTCTCTTCAAGAACAAAGAAGAGGAGGTGGAAGAG
GAGAAAGAGGATGAAGACAAGGGTAACGTCACCTCCAAAATCAAGAACAG
GCTTCTCGCGGATCCCCCCTCCATCTCCACCACCACCACCTGCCAATCCC
TCCCTCCCTCCCGCCCTCTCACTCCTGAAGAGGTCGAAAAAATACGTCGT
CTAGCGGAGGGACTCTTGTTCATGAACGAGATTGACAGGGTCCAGAGCGG
CCGCTCCCTCCGGCATGACTTGAACGCCCTTCGACTTTTTATCAGTCGAG
GGAAGGAGATGACGCAATACCATTTGATGCGGTTGGAGATGGGTTTGCGA
GCGTACGTGGGTCGAATGCGGGCGCAGCTCTTGCGAGCAAAAAGGGAGTT
TGGAAGGTGGGAGCAGAAGGGGAGGGACGGTAGGAGGGGTGGGAGGCAGG
AGAGGAAGGGAGTGTATGGAGCGATGGAGGTGACAGTAAGGCAGGCAAGG
AGGAGTTTGGAAGGGCAGCAGAGGGAGTTGTTGATGGTGCAGCGAGGGGT
GGGAGGGGGGAAAGGGGAGGGGGGGGGAAGGGGCGCAAGAGCGGCAGCAG
GAGGAAGGAAGGGCCTTGGAGGATGTACAGACAGCGTTGGATGCTTTGAC
CAGGTTGCAGCGGACGCTACGGAAGACACGGCAGCAGCAGCAGCAGGAGG
AGCAGCAGCAGCGCGATACGGTCCCTTTGGATGCGTTACCGCATGAAGGG
GAGGAGGGCGGGACGGAGGAACAGAAGGAGGAGGGTATGAAGATCAGAGC
GGCGGCGTTGTTTCGGGTGGGGAAGGAAGTGACGGAAGATCAAATCGCTG
CGGCGGAGCACTTATTGAGAGCCTGCGAGGATTTCAGGCAGAGGTTGCTG
AGGAAAGTGCAGCGCCAGCAACAGCAGCAGCGGCGACAGCAGCGTCAGCA
GCGGGGTGGCAAGAGAGGGGGAGGGAGAAGGGGAGGAGAGAGGGAGGAGG
TGAATCGACGGAAGTCGCTGGCGGCGCAAAAGTTTTTTTTTGGAAAAGAA
TGCTGGAGCCCAGTGTATTGA

Coding sequence (CDS) from alignment at scaffold_2:115315..117985-

>mRNA_655 ID=mRNA_655|Name=jgi.p|Nanoce1779_2|627101|organism=Nannochloropsis oceanica|type=CDS|length=1122bp|location=Sequence derived from alignment at scaffold_2:115315..117985- (Nannochloropsis oceanica)
ATGGTGATGGGCAGGAAGCGCGGGCGTCCGCCCAAAGTCGCCGCGTCCAG
CAGCAACCGGGCAGTGCCTGATTCCCCTTCCTCCTCCTCCTGCTCCTCTT
CCTCCTCCAGCTCCAGCTCCCACCTCACACCTTCGCAAACCGAGACTGCC
ATGCTTCTAGCCCTGCGCACAGGTGGCCATCTCGGGTGGGGCAAGCCCAA
AGACGAACCGTGGTGGCCTTGCATTGCTGCGCGCTCGTACACGGTCCTCC
ATCACTTCACCAGCACGCAAGAGCCCCGCGTCCCCCTGGGAAAAGGACGA
GTATTAGCTTACTTCCTCGGAGATGATACCTACGACATCCTGGACGAAGG
TTGGTTTGAGGTGGGTTACATCTTGCGGAAACCCACAAAAACCCAGATTG
TGGCGCGACCGGAGTACGCCGAGGGAACGGTGGTAGGTGATAAATTGCTG
GCACGGATTGAAGCTTTGGACGAGGAGGAGGGAATGAAACTCCGCGGGCT
TTTGAGCAGGGGGGTAGGTAGAATGGTCCAGGTGTATGTGGAGGGGAAGC
AAGCAGCCGAGACAGGGGCAGCTGGAGGAGGAGGGGAAGGAGGAGATGAG
AGTGATGAGTTGGGAAGCCCTGCGTGTTTTATGGCTGATACTTGGTGGCC
AGCCGTAGCGGTGGACTCGTGGGAAGTCGGGGAGAGAGCAAGATTAGGGC
TGGCGATACCCCAGCGGGAACTTAGTCGAGGAGAAGCCCTTGTATTTAAA
CTGGGCAGTTGGGTGCCACCATCGCAGAGGTGGGATGTCGTGAGGCGCTG
TAGCCCTTATGCTAGTAGCAGCAGCAGCAGCAGCAGCGGCGGCGGCGGCG
GTAGAATGTTGGGTGCGGGGGAGGGAGGAGATTTCAATAAATGCATGTTG
GAGGCGGCGAAGACGGAAGCGAAGGCTTTGGTGGCTCCACCGATGGATGG
GGAGACAAGGCGGTCCCGGATGGGGAGAGGATTTGTGTTTTCGAAGGGTG
AGGAGGAGGAGGAAGAGGAGGGAGGAGGGGAGGATGTAGAGTCAATGATG
GAAGGGAAACGACAACGGGGGAAGAGAAAGGGAGGGCGGGGAGGAGATGG
GGGAGGAGAAGAAGAAGGATAA

Synonyms

Publications