jgi.p|Nanoce1779_2|597315, mRNA_6548 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597315
Unique NamemRNA_6548
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length817
Alignment locationscaffold_18:135016..136123 +

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Properties
Property NameValue
TranscriptId597401
TrackFilteredModels2
ProteinId597315
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:135016..136123 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597315gene_6548Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597315mRNA_6548-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6548CDS_6548Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6548 ID=mRNA_6548|Name=jgi.p|Nanoce1779_2|597315|organism=Nannochloropsis oceanica|type=mRNA|length=817bp
ACAGCACAGATATAATGTCTTCCAAGCGTGGACGCGGTGGTACCACGGGC
GCCAAGTTCCGTATGACCCTGGGTCTGCCCGTCGCCGCCGTCATCAACTG
CGCCGACAACACGGGCGCCAAGAACTTGCACATCATCGCGGTGGGCGGGA
TCAAGGGCCGTTTGAACCGCCTGCCCGCTGCTTCTGTGGGGGACATGGTG
ATGGCATCCGTACGCAAGGGGAAGCCCGAGCTACGTAAAAAGGTGATGCC
TGCCGTGGTGATCCGGCAGCGCAAAGCCTGGCGAAGAAAAGATGGGATTT
TCATCTACTTTGAGGATAATGCGGGGGTTATCGTCAACAACAAGGGGGAG
ATGAAGGGGTCGGCAATTACAGGACCGGTGGGGAAGGAATGCGCGGATCT
CTGGCCTCGTATTGCCTCTAACTCGGGCACGATTGTTTAAGCAGGCTCTG
TGTCCCTGTGTCTGAGTGTGCGGGGGGGGGTGGTGCGGGGGGGGACGACC
CTTTGTGTTTCCTTGTTGCCAGTGATATCCTCTTCATTCAACCAATCACG
AGCGTCCCACTGCTTTCTTAAAGGATGAAAGACGTGCGTGGAGACGAAAA
AGAGAGTATGGGAGAATGACAGATGGTTCCTCTATGCAGAACGACACCTA
CAACTGCATTAGACACTACGTAACAATTCCTCTTCCTGTCCAGTTCCACG
GCTTTTCCAGGCGCCCCCTCCTTTTTAGGTCGCGTGTTGGTCAGAACAGT
AAGGCCACCGGGGATGGAGAAATTTGAGATGACGCGTAATAAGAAGAAAA
AGGAAACGCATGGAATA
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protein sequence of jgi.p|Nanoce1779_2|597315

>mRNA_6548-protein ID=mRNA_6548-protein|Name=jgi.p|Nanoce1779_2|597315|organism=Nannochloropsis oceanica|type=polypeptide|length=142bp
MSSKRGRGGTTGAKFRMTLGLPVAAVINCADNTGAKNLHIIAVGGIKGRL
NRLPAASVGDMVMASVRKGKPELRKKVMPAVVIRQRKAWRRKDGIFIYFE
DNAGVIVNNKGEMKGSAITGPVGKECADLWPRIASNSGTIV*
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mRNA from alignment at scaffold_18:135016..136123+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6548 ID=mRNA_6548|Name=jgi.p|Nanoce1779_2|597315|organism=Nannochloropsis oceanica|type=mRNA|length=1108bp|location=Sequence derived from alignment at scaffold_18:135016..136123+ (Nannochloropsis oceanica)
ACAGCACAGATATAATGTCTTCCAAGCGTGGACGCGGTGGTACCACGGGC
GCCAAGTTCCGTATGACCCTGGGTCTGCCCGTCGCCGCCGTCATCAACTG
CGCCGGTGAGTGGGGGTTGGCTATAGGTTTGATTTACTTGATGGGCTTGT
TGGTTGTGTGTGGGTATGTCAGTGAAAGATCACCTTGCATATGTAGGTGC
ATGTCAGAAGGCAATGTCCGCCCGGGGGTCTCACGGGGGGCAGGGTCTCA
TCGTCGTTTCTGTCTCGAAGAATATGGAGAGTAACTCACTGCCGGGATCG
TGTGGACGTGCCGTGGAGACGATCTAGTACAGGCATATTTCCTAGAAGCT
TAAGCTGACCCTTTCTTTTTCTCCTTTTTCTCTTTTCTCGACACAGACAA
CACGGGCGCCAAGAACTTGCACATCATCGCGGTGGGCGGGATCAAGGGCC
GTTTGAACCGCCTGCCCGCTGCTTCTGTGGGGGACATGGTGATGGCATCC
GTACGCAAGGGGAAGCCCGAGCTACGTAAAAAGGTGATGCCTGCCGTGGT
GATCCGGCAGCGCAAAGCCTGGCGAAGAAAAGATGGGATTTTCATCTACT
TTGAGGATAATGCGGGGGTTATCGTCAACAACAAGGGGGAGATGAAGGGG
TCGGCAATTACAGGACCGGTGGGGAAGGAATGCGCGGATCTCTGGCCTCG
TATTGCCTCTAACTCGGGCACGATTGTTTAAGCAGGCTCTGTGTCCCTGT
GTCTGAGTGTGCGGGGGGGGGTGGTGCGGGGGGGGACGACCCTTTGTGTT
TCCTTGTTGCCAGTGATATCCTCTTCATTCAACCAATCACGAGCGTCCCA
CTGCTTTCTTAAAGGATGAAAGACGTGCGTGGAGACGAAAAAGAGAGTAT
GGGAGAATGACAGATGGTTCCTCTATGCAGAACGACACCTACAACTGCAT
TAGACACTACGTAACAATTCCTCTTCCTGTCCAGTTCCACGGCTTTTCCA
GGCGCCCCCTCCTTTTTAGGTCGCGTGTTGGTCAGAACAGTAAGGCCACC
GGGGATGGAGAAATTTGAGATGACGCGTAATAAGAAGAAAAAGGAAACGC
ATGGAATA
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Coding sequence (CDS) from alignment at scaffold_18:135016..136123+

>mRNA_6548 ID=mRNA_6548|Name=jgi.p|Nanoce1779_2|597315|organism=Nannochloropsis oceanica|type=CDS|length=852bp|location=Sequence derived from alignment at scaffold_18:135016..136123+ (Nannochloropsis oceanica)
ATGTCTTCCAAGCGTGGACGCGGTGGTACCACGGGCGCCAAGTTCCGTAT
GACCCTGGGTCTGCCCGTCGCCGCCGTCATCAACTGCGCCGACAACACGG
GCGCCAAGAACTTGCACATCATCGCGGTGGGCGGGATCAAGGGCCGTTTG
AACCGCCTGCCCGCTGCTTCTGTGGGGGACATGGTGATGGCATCCGTACG
CAAGGGGAAGCCCGAGCTACGTAAAAAGGTGATGCCTGCCGTGGTGATCC
GGCAGCGCAAAGCCTGGCGAAGAAAAGATGGGATTTTCATCTACTTTGAG
GATAATGCGGGGGTTATCGTCAACAACAAGGGGGAGATGAAGGGGTCGGC
AATTACAGGACCGGTGGGGAAGGAATGCGCGGATCTCTGGCCTCGTATTG
CCTCTAACTCGGGCACGATTGTTTAAATGTCTTCCAAGCGTGGACGCGGT
GGTACCACGGGCGCCAAGTTCCGTATGACCCTGGGTCTGCCCGTCGCCGC
CGTCATCAACTGCGCCGACAACACGGGCGCCAAGAACTTGCACATCATCG
CGGTGGGCGGGATCAAGGGCCGTTTGAACCGCCTGCCCGCTGCTTCTGTG
GGGGACATGGTGATGGCATCCGTACGCAAGGGGAAGCCCGAGCTACGTAA
AAAGGTGATGCCTGCCGTGGTGATCCGGCAGCGCAAAGCCTGGCGAAGAA
AAGATGGGATTTTCATCTACTTTGAGGATAATGCGGGGGTTATCGTCAAC
AACAAGGGGGAGATGAAGGGGTCGGCAATTACAGGACCGGTGGGGAAGGA
ATGCGCGGATCTCTGGCCTCGTATTGCCTCTAACTCGGGCACGATTGTTT
AA
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Synonyms
Publications