jgi.p|Nanoce1779_2|597304, mRNA_6545 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597304
Unique NamemRNA_6545
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1150
Alignment locationscaffold_18:128006..129155 -

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Properties
Property NameValue
TranscriptId597390
TrackFilteredModels2
ProteinId597304
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:128006..129155 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597304gene_6545Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597304mRNA_6545-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6545CDS_6545Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6545 ID=mRNA_6545|Name=jgi.p|Nanoce1779_2|597304|organism=Nannochloropsis oceanica|type=mRNA|length=1150bp
ACAGACTTTTATCGTCCTGTCTACCAAATCGCCTAGCCATTGATCTCCCC
CCCACGCTCTGCTCCAGGCTTCGCCAAAGCCAAGGCCCATTCGACGCCAC
TCGTCAAGAGACCCCCGACAACCTGCAACGCTATGCACGGCCTCCCCGCC
CTGTTCTTCCTGCTCTTTCGCCTCCTCCTTAACAATTTTGCTCGAGCCCA
AGAGCACGGGGGAATCACAGATATCAACGGCACGCTCGTTAAATGCCACA
CGACCGCCGCAAACGGGGCAGCCTTCATCCTCGAAATAAAACGTGAGTGG
GCTCCCCTCGGCGCGGAGCGATTCCTGCAGCTAGTCGAGTCCGGATACTT
CACAAATGTGCCCTTTTTCCGTGTGGTTCCTGGATTCTTGACCCAGTTCG
GCATCCCCCCCGCTTCGGATGTCCGAAAGCGCTGGAGATTGGCAGGCGCA
ATTCAAGATGACCCCACCCAGAATCGTTCCATTTTACGAGGATACTTGAG
CTTTGCCGGTGGCGGTCCCAACACCCGGGACAGCCAGCTATTCATTGCCT
TGGCAGACAGTACCTGGCTGGGCAAGTCGCCGTGGGAAGTCCCGCTAGGT
CGAGTGATTGAAGGGATGGATGAAGTGCTTGATTCGTTGTATTCGGGATA
TGGGGAAATTTCGCCTTTTAACAAGGAGGGGATAGACCAGGGGAAGATTT
GGGCAGATGATGAGTATCTGAGGAGGGAGTTTCCGAAGTTGGATTATTTT
ACGGATTGTATGGTAATTGAGGCGTCTGTCAAAAGAGAGAAGCAGGAAGT
GAATGAGGGGCAGGACAAGGAACATGACGCCCAAAGAAAGGAGGCAACCC
CTACGAGAATAGCAAAAGCGACGGCATCAGATGTACACCCAGATGAAACG
CCGGAACGTTCCGAGGGATCGCTGTTGGGTTTGTGGTCAGTGCTGTGCAT
GGTAGGGGGAATGGTGGGATTTCAGGTATTGATGTTGGTTCTGAAGGGCG
GGAAAAGCATGGAGAAAGGCAAGTAAGATGGGTAAAAAGGAGGTATAGTG
ACAGACTCAGAAAACAATAGGAGCAAATGCCTGCACAACTAAGCGGCAAG
CCGAAAGGCATCTACCCGAAGCGATAAAGAATAAGGGAGGGAAAACACGC
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protein sequence of jgi.p|Nanoce1779_2|597304

>mRNA_6545-protein ID=mRNA_6545-protein|Name=jgi.p|Nanoce1779_2|597304|organism=Nannochloropsis oceanica|type=polypeptide|length=298bp
MHGLPALFFLLFRLLLNNFARAQEHGGITDINGTLVKCHTTAANGAAFIL
EIKREWAPLGAERFLQLVESGYFTNVPFFRVVPGFLTQFGIPPASDVRKR
WRLAGAIQDDPTQNRSILRGYLSFAGGGPNTRDSQLFIALADSTWLGKSP
WEVPLGRVIEGMDEVLDSLYSGYGEISPFNKEGIDQGKIWADDEYLRREF
PKLDYFTDCMVIEASVKREKQEVNEGQDKEHDAQRKEATPTRIAKATASD
VHPDETPERSEGSLLGLWSVLCMVGGMVGFQVLMLVLKGGKSMEKGK*
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mRNA from alignment at scaffold_18:128006..129155-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6545 ID=mRNA_6545|Name=jgi.p|Nanoce1779_2|597304|organism=Nannochloropsis oceanica|type=mRNA|length=1150bp|location=Sequence derived from alignment at scaffold_18:128006..129155- (Nannochloropsis oceanica)
ACAGACTTTTATCGTCCTGTCTACCAAATCGCCTAGCCATTGATCTCCCC
CCCACGCTCTGCTCCAGGCTTCGCCAAAGCCAAGGCCCATTCGACGCCAC
TCGTCAAGAGACCCCCGACAACCTGCAACGCTATGCACGGCCTCCCCGCC
CTGTTCTTCCTGCTCTTTCGCCTCCTCCTTAACAATTTTGCTCGAGCCCA
AGAGCACGGGGGAATCACAGATATCAACGGCACGCTCGTTAAATGCCACA
CGACCGCCGCAAACGGGGCAGCCTTCATCCTCGAAATAAAACGTGAGTGG
GCTCCCCTCGGCGCGGAGCGATTCCTGCAGCTAGTCGAGTCCGGATACTT
CACAAATGTGCCCTTTTTCCGTGTGGTTCCTGGATTCTTGACCCAGTTCG
GCATCCCCCCCGCTTCGGATGTCCGAAAGCGCTGGAGATTGGCAGGCGCA
ATTCAAGATGACCCCACCCAGAATCGTTCCATTTTACGAGGATACTTGAG
CTTTGCCGGTGGCGGTCCCAACACCCGGGACAGCCAGCTATTCATTGCCT
TGGCAGACAGTACCTGGCTGGGCAAGTCGCCGTGGGAAGTCCCGCTAGGT
CGAGTGATTGAAGGGATGGATGAAGTGCTTGATTCGTTGTATTCGGGATA
TGGGGAAATTTCGCCTTTTAACAAGGAGGGGATAGACCAGGGGAAGATTT
GGGCAGATGATGAGTATCTGAGGAGGGAGTTTCCGAAGTTGGATTATTTT
ACGGATTGTATGGTAATTGAGGCGTCTGTCAAAAGAGAGAAGCAGGAAGT
GAATGAGGGGCAGGACAAGGAACATGACGCCCAAAGAAAGGAGGCAACCC
CTACGAGAATAGCAAAAGCGACGGCATCAGATGTACACCCAGATGAAACG
CCGGAACGTTCCGAGGGATCGCTGTTGGGTTTGTGGTCAGTGCTGTGCAT
GGTAGGGGGAATGGTGGGATTTCAGGTATTGATGTTGGTTCTGAAGGGCG
GGAAAAGCATGGAGAAAGGCAAGTAAGATGGGTAAAAAGGAGGTATAGTG
ACAGACTCAGAAAACAATAGGAGCAAATGCCTGCACAACTAAGCGGCAAG
CCGAAAGGCATCTACCCGAAGCGATAAAGAATAAGGGAGGGAAAACACGC
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Coding sequence (CDS) from alignment at scaffold_18:128006..129155-

>mRNA_6545 ID=mRNA_6545|Name=jgi.p|Nanoce1779_2|597304|organism=Nannochloropsis oceanica|type=CDS|length=894bp|location=Sequence derived from alignment at scaffold_18:128006..129155- (Nannochloropsis oceanica)
ATGCACGGCCTCCCCGCCCTGTTCTTCCTGCTCTTTCGCCTCCTCCTTAA
CAATTTTGCTCGAGCCCAAGAGCACGGGGGAATCACAGATATCAACGGCA
CGCTCGTTAAATGCCACACGACCGCCGCAAACGGGGCAGCCTTCATCCTC
GAAATAAAACGTGAGTGGGCTCCCCTCGGCGCGGAGCGATTCCTGCAGCT
AGTCGAGTCCGGATACTTCACAAATGTGCCCTTTTTCCGTGTGGTTCCTG
GATTCTTGACCCAGTTCGGCATCCCCCCCGCTTCGGATGTCCGAAAGCGC
TGGAGATTGGCAGGCGCAATTCAAGATGACCCCACCCAGAATCGTTCCAT
TTTACGAGGATACTTGAGCTTTGCCGGTGGCGGTCCCAACACCCGGGACA
GCCAGCTATTCATTGCCTTGGCAGACAGTACCTGGCTGGGCAAGTCGCCG
TGGGAAGTCCCGCTAGGTCGAGTGATTGAAGGGATGGATGAAGTGCTTGA
TTCGTTGTATTCGGGATATGGGGAAATTTCGCCTTTTAACAAGGAGGGGA
TAGACCAGGGGAAGATTTGGGCAGATGATGAGTATCTGAGGAGGGAGTTT
CCGAAGTTGGATTATTTTACGGATTGTATGGTAATTGAGGCGTCTGTCAA
AAGAGAGAAGCAGGAAGTGAATGAGGGGCAGGACAAGGAACATGACGCCC
AAAGAAAGGAGGCAACCCCTACGAGAATAGCAAAAGCGACGGCATCAGAT
GTACACCCAGATGAAACGCCGGAACGTTCCGAGGGATCGCTGTTGGGTTT
GTGGTCAGTGCTGTGCATGGTAGGGGGAATGGTGGGATTTCAGGTATTGA
TGTTGGTTCTGAAGGGCGGGAAAAGCATGGAGAAAGGCAAGTAA
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Synonyms
Publications