jgi.p|Nanoce1779_2|631982, mRNA_6544 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|631982
Unique Name	mRNA_6544
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2582
Alignment location	scaffold_18:125373..127975 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	632068
Track	FilteredModels2
ProteinId	631982

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:125373..127975 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|631982	gene_6544	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|631982	mRNA_6544-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6544	CDS_6544	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:125373..127975+
coding sequence from alignment at scaffold_18:125373..127975+

mRNA sequence

>mRNA_6544 ID=mRNA_6544|Name=jgi.p|Nanoce1779_2|631982|organism=Nannochloropsis oceanica|type=mRNA|length=2582bp
AGTCGAGACCTCAGCGGCGGGGGCGGGGGTGGCGACGGGACAAATGGCCA
AGGCAGCGAGTGGACGCTCCTGGACGAGCGCGCCTCAAGGGGCCCTGCAT
CTTGCTCACCGGGAACATCCGCATCGAGGGAGTTTTTAATGATGGCCAAA
CATCGGCGGAGGTCCATGTCTCTTGACATTCCTCAGCACCAGCACCAAAA
CCACCACCACCACCAGCAGCAGCAGCAGCAGCACAATAACTACCATCACG
GCAAGCATCACCAACCACTTCCACTGCATCACCATCAGCACCAGCACCAG
CGTTCGTCATCTGCTGCATTTAGCAGCAGTCCTGGCGGCAACCCGTCTTC
CTTGTCACGGGAGTTTTCGGGCCTCAGCATAGGCATGGGTGGCACTGGTA
GTAGCGCTACAAGCAATCATTCATTCAGGGATCGAAGCAGTAGCAGTGGG
GCAGGCAGCACGGTGGACGGCAGTGCCGTCGGTAGCGCGAGCGCAAGCGG
TAGCACGACGGGGAGCACGACGGGGAGCATTGGAGGAAGTGGTAGTGGGG
CTTTGCGTAGCGGCGGGGCCTCCTCTTCCTCCTTTTCTTCCGTGGCTTCG
GCCAGCGAGACGTTCACGGCCATGGGTGCCACGGGAGCAGGTGGTTCTGA
GTCGAATCTACAAAGACAAATCAGGGCAAGGTTGGAGGAGGCAGAGCAAC
AGACAGCATATTGGCAGGCGAGGGCAAAGGAAGCGGAGCAGGCGGCAGTA
AAAAGCAAAACGGAATGTGTGACGCTGCGGTGTCAGCTAAATGCACAGCA
GTGCACGGCCTCGTCTTTGGATGAGGTGTTGGTGTCAATGCATGCGAGGG
TGGAGCGGATAAGGGAGCGGTTGAAGGCGAAGTCGAGTGTTGCGACTGCT
GCTGCTGGTTTTGCTGAAAGTGGGAATGGAAGAATAGGAGGAGAAGGAGG
AGGGGATTGTTATCATTCACGACCGTCAGTACTGGAGAATATAGAGCTCG
GGTTAATGGGGTTGGAGAAGCAATTGTTAGAAGAAGGCGCTGTCAGGAGA
GGTCGAATAGAAGGGGGAAGAGGAACAACAGCAGGAGCAAAAGACGCCTA
CACCATGACCATTCCCGACGCCGCTGCTGCCACTACTCCTGCCTCGACTC
CTTCCTCTCCTCCTATTCTTCCTACCTCTGTTATCCACTTTCGGCGGTTC
TCTCCGGGGGATGTGGCCTTGTTCTTCCCTACGCCTGCGGGCGATTACCT
TGCGTTTAATGTGGGGTGTCCCCATCATTACTTGTCCGAGGAATCCAAGG
CCTTGATTGGAAAAGACAAGCATTTCAGAAAGTACTACGTCTTGGGGCGG
ATTACACGATTGATGAAGTGTCAGGTGCCAAGCGTGGAAGACGAGGAGGA
AGGGAGGGAGGGAGGGAGGGGGGCAGCAGGTTCTGTGAGTAAGGGGCCAT
ATAATTTGGCGGGGGGATGCAGGTATGCTGTGGTCTCGGTGGAGCCCATC
AAGAGCTTGTGAGAGCCGAACAGCTTGAAAAGCAGTCCTGTCAAGGTGCA
TTATATAAGATGCGTACTGGGGGACAGTCCTGAGGAGGGACGGAAGGAGG
GATTGAGGGCTGGTGAGAGTTGATGGAAAGTCAAGAATATCGGCATCTAC
AAAGTCGTGTTTTTGGGTTAAAGTAGATAGATTAAATCGTACAAAAGGAA
AATAGTTAGATAAAAAGAGACATGCAGGAGAGAAGGAGAAGGAGATTTGA
GAGAGTGAAAGCGGCATTTGTGAGCAAGCCGTACACACGCCTGTATTTCC
CCATCCTTCACACTCACACATATCCCAGCGCCCAAAATGTGTTGAACACA
CAAAATATACATTAACAAATATGCGCGAAATTGCCGAATTGCCGAAGAGT
AGACCCAGTACTGCCCATACCTCGATCCCACCAGGACTTTGACTGACCCG
AAGGGTACCTACTCCCCTCGTAGTGGGGATGGGGCTGCTGCTCCTGCTCC
TAATTGTCAGTGGTGGCGGTGTTGGTCGTATTTATGTAAGCGGAATGGAT
ATAACACACGTACAAACAAATACACATACACACCTAATTACATACCGTCC
TAATAAATAATTCGTCACATGCATATCCCACTATGAACAGACCGTGTTTT
AAAATGATTAACTTACTTGTTTGCCTTGTACGTAGATGATGATGATGATG
ACGATGATTGAGACGACGAAGAGAGGTGAGAAAAGCAAAATAATTAGAGG
GGAAGGTCAGAGCAATGAGAGCAGTGGACGGGAAGTCGGGGGGACATGGC
CTAATCCCACAACACCTTTCTGTTGCTAAGGCGGAGGAAACGTGCGTCAT
TACGGGGTTGGAGAGAAAGTCGTTGGAAAAAGCAAGAAAGAATAAAAGGT
AGACATGGTATTTGTGTAGGAGGAAGGGGCAGGCAGCGGGATTACGGGAG
AGGAAAAGCAAAATATCATTGAGCTTCCCCCCCCCCCCGGCACGTGCTGA
TCATCATGTCTGTCTAGGTTCAGATCAAAATAAATTGGAGAAATCAAAAT
TAAAGTCATCGAGTGAGCGAGCACACAAACAC

protein sequence of jgi.p|Nanoce1779_2|631982

>mRNA_6544-protein ID=mRNA_6544-protein|Name=jgi.p|Nanoce1779_2|631982|organism=Nannochloropsis oceanica|type=polypeptide|length=458bp
MMAKHRRRSMSLDIPQHQHQNHHHHQQQQQQHNNYHHGKHHQPLPLHHHQ
HQHQRSSSAAFSSSPGGNPSSLSREFSGLSIGMGGTGSSATSNHSFRDRS
SSSGAGSTVDGSAVGSASASGSTTGSTTGSIGGSGSGALRSGGASSSSFS
SVASASETFTAMGATGAGGSESNLQRQIRARLEEAEQQTAYWQARAKEAE
QAAVKSKTECVTLRCQLNAQQCTASSLDEVLVSMHARVERIRERLKAKSS
VATAAAGFAESGNGRIGGEGGGDCYHSRPSVLENIELGLMGLEKQLLEEG
AVRRGRIEGGRGTTAGAKDAYTMTIPDAAAATTPASTPSSPPILPTSVIH
FRRFSPGDVALFFPTPAGDYLAFNVGCPHHYLSEESKALIGKDKHFRKYY
VLGRITRLMKCQVPSVEDEEEGREGGRGAAGSVSKGPYNLAGGCRYAVVS
VEPIKSL*

mRNA from alignment at scaffold_18:125373..127975+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6544 ID=mRNA_6544|Name=jgi.p|Nanoce1779_2|631982|organism=Nannochloropsis oceanica|type=mRNA|length=2603bp|location=Sequence derived from alignment at scaffold_18:125373..127975+ (Nannochloropsis oceanica)
AGTCGAGACCTCAGCGGCGGGGGCGGGGGTGGCGACGGGACAAATGGCCA
AGGCAGCGAGTGGACGCTCCTGGACGAGCGCGCCTCAAGGGGCCCTGCAT
CTTGCTCACCGGGAACATCCGCATCGAGGGAGTTTTTAATGATGGCCAAA
CATCGGCGGAGGTCCATGTCTCTTGACATTCCTCAGCACCAGCACCAAAA
CCACCACCACCACCAGCAGCAGCAGCAGCAGCACAATAACTACCATCACG
GCAAGCATCACCAACCACTTCCACTGCATCACCATCAGCACCAGCACCAG
CGTTCGTCATCTGCTGCATTTAGCAGCAGTCCTGGCGGCAACCCGTCTTC
CTTGTCACGGGAGTTTTCGGGCCTCAGCATAGGCATGGGTGGCACTGGTA
GTAGCGCTACAAGCAATCATTCATTCAGGGATCGAAGCAGTAGCAGTGGG
GCAGGCAGCACGGTGGACGGCAGTGCCGTCGGTAGCGCGAGCGCAAGCGG
TAGCACGACGGGGAGCACGACGGGGAGCATTGGAGGAAGTGGTAGTGGGG
CTTTGCGTAGCGGCGGGGCCTCCTCTTCCTCCTTTTCTTCCGTGGCTTCG
GCCAGCGAGACGTTCACGGCCATGGGTGCCACGGGAGCAGGTGGTTCTGA
GTCGAATCTACAAAGACAAATCAGGGCAAGGTTGGAGGAGGCAGAGCAAC
AGACAGCATATTGGCAGGCGAGGGCAAAGGAAGCGGAGCAGGCGGCAGTA
AAAAGCAAAACGGAATGTGTGACGCTGCGGTGTCAGCTAAATGCACAGCA
GTGCACGGCCTCGTCTTTGGATGAGGTGTTGGTGTCAATGCATGCGAGGG
TGGAGCGGATAAGGGAGCGGTTGAAGGCGAAGTCGAGTGTTGCGACTGCT
GCTGCTGGTTTTGCTGAAAGTGGGAATGGAAGAATAGGAGGAGAAGGAGG
AGGGGATTGTTATCATTCACGACCGTCAGTACTGGAGAATATAGAGCTCG
GGTTAATGGGGTTGGAGAAGCAATTGTTAGAAGAAGGCGCTGTCAGGAGA
GGTCGAATAGAAGGGGGAAGAGGAACAACAGCAGGAGCAAAAGACGCCTA
CACCATGACCATTCCCGACGCCGCTGCTGCCACTACTCCTGCCTCGACTC
CTTCCTCTCCTCCTATTCTTCCTACCTCTGTTATCCACTTTCGGCGGTTC
TCTCCGGGGGATGTGGCCTTGTTCTTCCCTACGCCTGCGGGCGATTACCT
TGCGTTTAATGTGGGGTGTCCCCATCATTACTTGTCCGAGGAATCCAAGG
CCTTGATTGGAAAAGACAAGCATTTCAGAAAGTACTACGTCTTGGGGCGG
ATTACACGATTGATGAAGTGTCAGGTGCCAAGCGTGGAAGACGAGGAGGA
AGGGAGGGAGGGAGGGAGGGGGGCAGCAGGTTCTGTGAGTAAGGGGCCAT
ATAATTTGGCGGGGGGATGCAGGTATGCTGTGGTCTCGGTGGAGCCCATC
AAGAGCTTGTGAGAGCCGAACAGCTTGAAAAGCAGTCCTGTCAAGGTGCA
TTATATAAGATGCGTACTGGGGGACAGTCCTGAGGAGGGACGGAAGGAGG
GATTGAGGGCTGGTGAGAGTTGATGGAAAGTCAAGAATATCGGCATCTAC
AAAGTCGTGTTTTTGGGTTAAAGTAGATAGATTAAATCGTACAAAAGGAA
AATAGTTAGATAAAAAGAGACATGCAGGAGAGAAGGAGAAGGAGATTTGA
GAGAGTGAAAGCGGCATTTGTGAGCAAGCCGTACACACGCCTGTATTTCC
CCATCCTTCACACTCACACATATCCCAGCGCCCAAAATGTGTTGAACACA
CAAAATATACATTAACAAATATGCGCGAAATTGCCGAATTGCCGAAGAGT
AGACCCAGTACTGCCCATACCTCGATCCCACCAGGACTTTGACTGACCCG
AAGGGTACCTACTCCCCTCGTAGTGGGGATGGGGCTGCTGCTCCTGCTCC
TAATTGTCAGTGGTGGCGGTGTTGGTCGTATTTATGTAAGCGGAATGGAT
ATAACACACGTACAAACAAATACACATACACACCTAATTACATACCGTCC
TAATAAATAATTCGTCACATGCATATCCCACTATGAACAGACCGTGTTTT
AAAATGATTAACTTACTTGTTTGCCTTGTACGTAGATGATGATGATGATG
ACGATGATGATGATGATGATGACGATGATTGAGACGACGAAGAGAGGTGA
GAAAAGCAAAATAATTAGAGGGGAAGGTCAGAGCAATGAGAGCAGTGGAC
GGGAAGTCGGGGGGACATGGCCTAATCCCACAACACCTTTCTGTTGCTAA
GGCGGAGGAAACGTGCGTCATTACGGGGTTGGAGAGAAAGTCGTTGGAAA
AAGCAAGAAAGAATAAAAGGTAGACATGGTATTTGTGTAGGAGGAAGGGG
CAGGCAGCGGGATTACGGGAGAGGAAAAGCAAAATATCATTGAGCTTCCC
CCCCCCCCCGGCACGTGCTGATCATCATGTCTGTCTAGGTTCAGATCAAA
ATAAATTGGAGAAATCAAAATTAAAGTCATCGAGTGAGCGAGCACACAAA
CAC

Coding sequence (CDS) from alignment at scaffold_18:125373..127975+

>mRNA_6544 ID=mRNA_6544|Name=jgi.p|Nanoce1779_2|631982|organism=Nannochloropsis oceanica|type=CDS|length=1374bp|location=Sequence derived from alignment at scaffold_18:125373..127975+ (Nannochloropsis oceanica)
ATGATGGCCAAACATCGGCGGAGGTCCATGTCTCTTGACATTCCTCAGCA
CCAGCACCAAAACCACCACCACCACCAGCAGCAGCAGCAGCAGCACAATA
ACTACCATCACGGCAAGCATCACCAACCACTTCCACTGCATCACCATCAG
CACCAGCACCAGCGTTCGTCATCTGCTGCATTTAGCAGCAGTCCTGGCGG
CAACCCGTCTTCCTTGTCACGGGAGTTTTCGGGCCTCAGCATAGGCATGG
GTGGCACTGGTAGTAGCGCTACAAGCAATCATTCATTCAGGGATCGAAGC
AGTAGCAGTGGGGCAGGCAGCACGGTGGACGGCAGTGCCGTCGGTAGCGC
GAGCGCAAGCGGTAGCACGACGGGGAGCACGACGGGGAGCATTGGAGGAA
GTGGTAGTGGGGCTTTGCGTAGCGGCGGGGCCTCCTCTTCCTCCTTTTCT
TCCGTGGCTTCGGCCAGCGAGACGTTCACGGCCATGGGTGCCACGGGAGC
AGGTGGTTCTGAGTCGAATCTACAAAGACAAATCAGGGCAAGGTTGGAGG
AGGCAGAGCAACAGACAGCATATTGGCAGGCGAGGGCAAAGGAAGCGGAG
CAGGCGGCAGTAAAAAGCAAAACGGAATGTGTGACGCTGCGGTGTCAGCT
AAATGCACAGCAGTGCACGGCCTCGTCTTTGGATGAGGTGTTGGTGTCAA
TGCATGCGAGGGTGGAGCGGATAAGGGAGCGGTTGAAGGCGAAGTCGAGT
GTTGCGACTGCTGCTGCTGGTTTTGCTGAAAGTGGGAATGGAAGAATAGG
AGGAGAAGGAGGAGGGGATTGTTATCATTCACGACCGTCAGTACTGGAGA
ATATAGAGCTCGGGTTAATGGGGTTGGAGAAGCAATTGTTAGAAGAAGGC
GCTGTCAGGAGAGGTCGAATAGAAGGGGGAAGAGGAACAACAGCAGGAGC
AAAAGACGCCTACACCATGACCATTCCCGACGCCGCTGCTGCCACTACTC
CTGCCTCGACTCCTTCCTCTCCTCCTATTCTTCCTACCTCTGTTATCCAC
TTTCGGCGGTTCTCTCCGGGGGATGTGGCCTTGTTCTTCCCTACGCCTGC
GGGCGATTACCTTGCGTTTAATGTGGGGTGTCCCCATCATTACTTGTCCG
AGGAATCCAAGGCCTTGATTGGAAAAGACAAGCATTTCAGAAAGTACTAC
GTCTTGGGGCGGATTACACGATTGATGAAGTGTCAGGTGCCAAGCGTGGA
AGACGAGGAGGAAGGGAGGGAGGGAGGGAGGGGGGCAGCAGGTTCTGTGA
GTAAGGGGCCATATAATTTGGCGGGGGGATGCAGGTATGCTGTGGTCTCG
GTGGAGCCCATCAAGAGCTTGTGA

Synonyms

Publications