jgi.p|Nanoce1779_2|597301, mRNA_6543 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597301
Unique NamemRNA_6543
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length733
Alignment locationscaffold_18:124640..125372 +

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Properties
Property NameValue
TranscriptId597387
TrackFilteredModels2
ProteinId597301
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:124640..125372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597301gene_6543Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597301mRNA_6543-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6543CDS_6543Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6543 ID=mRNA_6543|Name=jgi.p|Nanoce1779_2|597301|organism=Nannochloropsis oceanica|type=mRNA|length=733bp
GGGAAGAGATCTGCGGAAGTGAGGCTGGTCAAGCGCACTGGACAGTACAA
GCGTATAGGACAGGAGAAGTGAAGCATGGAGAGGGAGTGGGAGAAGTTGT
TACTATAGCTGCTCGAGAGAAAAAGAAAAGTGGGGCGGCAAAAATGTAGA
GGAGCATGCCTTTTGTTACAGCCCCTGTCGCATTTCATCCAGTTTTTGCC
CTCTCCATATGTCCCTATCCACCACATATGTGTTGGCCCCCCTACATGTC
TGCATTCTCATTATTCCATCGGGCGGGAACCCGGCCCCACAAGGGTATAG
CTATAGCATGGGCATGGGGGCTCGCTGATGACGCCGCCGCTCGCAACTGC
CTCATCGCAGATTCCATTCCAGGGAACGTTGTCCATTTCGCATTTGCACT
GCATTGTCGGCTCTGGCTCATTCAAGTCAAAAAGGTGGACCTTAGGCACT
CCTTGCTCTTTGGGGTTTGGCGGGTGGCAGTCTGGCAATGCTTTTGACGC
CCAATTTCATTTTCCTATGCCGCAAAGAAAACTCCTAAGCTGCTGACCAC
GGCCCAGCATGACTTCATTCTCATTCCACATCCCGTCCTCTCCTATGTGC
ACACAGGTACACAGGCTACATGAGCTGGGGACGGTCACCCTCCCAGGGGC
TGGGTGCGTTGGGTCGTTCTCCGTTCAAGGGCTCGACGCCCAGACCCTTT
GCCCCGGGCGAAAGCAGCAGCAGTGGGGGTAGT
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protein sequence of jgi.p|Nanoce1779_2|597301

>mRNA_6543-protein ID=mRNA_6543-protein|Name=jgi.p|Nanoce1779_2|597301|organism=Nannochloropsis oceanica|type=polypeptide|length=114bp
MPFVTAPVAFHPVFALSICPYPPHMCWPPYMSAFSLFHRAGTRPHKGIAI
AWAWGLADDAAARNCLIADSIPGNVVHFAFALHCRLWLIQVKKVDLRHSL
LFGVWRVAVWQCF*
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mRNA from alignment at scaffold_18:124640..125372+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6543 ID=mRNA_6543|Name=jgi.p|Nanoce1779_2|597301|organism=Nannochloropsis oceanica|type=mRNA|length=733bp|location=Sequence derived from alignment at scaffold_18:124640..125372+ (Nannochloropsis oceanica)
GGGAAGAGATCTGCGGAAGTGAGGCTGGTCAAGCGCACTGGACAGTACAA
GCGTATAGGACAGGAGAAGTGAAGCATGGAGAGGGAGTGGGAGAAGTTGT
TACTATAGCTGCTCGAGAGAAAAAGAAAAGTGGGGCGGCAAAAATGTAGA
GGAGCATGCCTTTTGTTACAGCCCCTGTCGCATTTCATCCAGTTTTTGCC
CTCTCCATATGTCCCTATCCACCACATATGTGTTGGCCCCCCTACATGTC
TGCATTCTCATTATTCCATCGGGCGGGAACCCGGCCCCACAAGGGTATAG
CTATAGCATGGGCATGGGGGCTCGCTGATGACGCCGCCGCTCGCAACTGC
CTCATCGCAGATTCCATTCCAGGGAACGTTGTCCATTTCGCATTTGCACT
GCATTGTCGGCTCTGGCTCATTCAAGTCAAAAAGGTGGACCTTAGGCACT
CCTTGCTCTTTGGGGTTTGGCGGGTGGCAGTCTGGCAATGCTTTTGACGC
CCAATTTCATTTTCCTATGCCGCAAAGAAAACTCCTAAGCTGCTGACCAC
GGCCCAGCATGACTTCATTCTCATTCCACATCCCGTCCTCTCCTATGTGC
ACACAGGTACACAGGCTACATGAGCTGGGGACGGTCACCCTCCCAGGGGC
TGGGTGCGTTGGGTCGTTCTCCGTTCAAGGGCTCGACGCCCAGACCCTTT
GCCCCGGGCGAAAGCAGCAGCAGTGGGGGTAGT
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Coding sequence (CDS) from alignment at scaffold_18:124640..125372+

>mRNA_6543 ID=mRNA_6543|Name=jgi.p|Nanoce1779_2|597301|organism=Nannochloropsis oceanica|type=CDS|length=342bp|location=Sequence derived from alignment at scaffold_18:124640..125372+ (Nannochloropsis oceanica)
ATGCCTTTTGTTACAGCCCCTGTCGCATTTCATCCAGTTTTTGCCCTCTC
CATATGTCCCTATCCACCACATATGTGTTGGCCCCCCTACATGTCTGCAT
TCTCATTATTCCATCGGGCGGGAACCCGGCCCCACAAGGGTATAGCTATA
GCATGGGCATGGGGGCTCGCTGATGACGCCGCCGCTCGCAACTGCCTCAT
CGCAGATTCCATTCCAGGGAACGTTGTCCATTTCGCATTTGCACTGCATT
GTCGGCTCTGGCTCATTCAAGTCAAAAAGGTGGACCTTAGGCACTCCTTG
CTCTTTGGGGTTTGGCGGGTGGCAGTCTGGCAATGCTTTTGA
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Synonyms
Publications