jgi.p|Nanoce1779_2|597300, mRNA_6542 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|597300
Unique Name	mRNA_6542
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1397
Alignment location	scaffold_18:123045..124590 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	597386
Track	FilteredModels2
ProteinId	597300

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:123045..124590 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597300	gene_6542	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597300	mRNA_6542-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6542	CDS_6542	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:123045..124590+
coding sequence from alignment at scaffold_18:123045..124590+

mRNA sequence

>mRNA_6542 ID=mRNA_6542|Name=jgi.p|Nanoce1779_2|597300|organism=Nannochloropsis oceanica|type=mRNA|length=1397bp
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTC
CTTCTCGTCATCGATCCCCACGGCTGCAGCGGTCGCGGACATAGCTACTC
AAGAAGTTATCGATCGCATCGAAGAGTTCATTGCCGCCTGGATTGCGTCC
TTCAGCAACCCCGCCATCACGGAACCCCCTACATTTGAGGTCCCTCGACG
CAACCAATCCAACTCCACCTACCACAAGGGCGCCACCGGTGGCGATGACA
CCGACACGATGGAGCAAGACCGACTGCCGGGCCTGCGACAAGGAAGTGAA
ATGATCGTGAAAAAGCTGAAAGGGAAGGGCGCGCGTTCTTATGCTGCCAT
TTTTGCCGTGTTGGCTTTCTCACACCGCGTGCTGCTTTCGGGGCAGATTG
CGACGAGTCGAGAGTTGTGGTATCACTACAAGACGTCGCGGAAGTGCTTC
AAGAGCCAGGCGGACTGTGATCGGGCCGTGCTTGATGCAGCGGCGCTGTT
GGGCGTTGCGAGGCATCAACTAGGGATAGTGGGGGCGGCGAAGGGGTTGT
TTGCAGGGTATTTCCGGTTTCGACCGTTGGGAAGTTTGATGGCCTGGACG
GAGTGTAATGCGAGTGGAGGAGAGGGAGGAGGTGGAGGAGGGGGTGGAAC
GTTGATTGATAGTCGCTGGATAACTGAGGTGATGGAGATTGAGTGCGCGG
GGGGGCATCGACCAAGATATGTGCTGGTGGTGGAGAAAGAGTGTGTGTTC
CAACGGCTGCTGGGGGATGGATTATGCGACGCGGCCGGAGGTGTGGTACT
TATTACAGGGAAAGGCTACCCGGATTTGGCCACGCGCGCTTGTTTGAAGG
CTTTGGTGGATTGTTGGGGAGTTACGGTGCTCGGCCTATGTGACTGTAAT
CCGCACGGCATCGCTCTCCTCCTCACCTACAAATGCGGCTCCTTGCGCAT
GCCCGAGTCCCAGCTTTACCGCGTGCCACTGCGCTGGCTCGGTGTGCGGC
CTTCGCAGATTTTGCAGCGTTTTGACCTACCCGACGAGGTTTTTCAGGAC
TTTTCGGAGGGGGACGCGAGGAAGTGTCGGTCGTTACTGGCGTCTCCTTT
TTGTCAGGCGCACCCCAGGTGGAGGGAGGAGGTGGAGGCAATGGTATGCT
TTTCTCATGTGTGTATATGTGCTGTTTGGCTTTCACGATTCGCGGCGGTA
CTGATGTTCGTACTTTGTCCACCACTCGCTTTCTCCCTCTCGCCCTCCCC
CGGTCCCGCGCACACACAGGCCGACGAACACATGAAATGCGAGCTCGAGG
CGCTCAACACCTTCTCGGGCACTGAGGGTCGACGTGATTTTCTATGCCAG
TTTGTCGTGTCCTCCTTGATGTCAGGAGACCACCTGAGCTAAGCTGT

protein sequence of jgi.p|Nanoce1779_2|597300

>mRNA_6542-protein ID=mRNA_6542-protein|Name=jgi.p|Nanoce1779_2|597300|organism=Nannochloropsis oceanica|type=polypeptide|length=378bp
MEQDRLPGLRQGSEMIVKKLKGKGARSYAAIFAVLAFSHRVLLSGQIATS
RELWYHYKTSRKCFKSQADCDRAVLDAAALLGVARHQLGIVGAAKGLFAG
YFRFRPLGSLMAWTECNASGGEGGGGGGGGTLIDSRWITEVMEIECAGGH
RPRYVLVVEKECVFQRLLGDGLCDAAGGVVLITGKGYPDLATRACLKALV
DCWGVTVLGLCDCNPHGIALLLTYKCGSLRMPESQLYRVPLRWLGVRPSQ
ILQRFDLPDEVFQDFSEGDARKCRSLLASPFCQAHPRWREEVEAMVCFSH
VCICAVWLSRFAAVLMFVLCPPLAFSLSPSPGPAHTQADEHMKCELEALN
TFSGTEGRRDFLCQFVVSSLMSGDHLS*

mRNA from alignment at scaffold_18:123045..124590+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6542 ID=mRNA_6542|Name=jgi.p|Nanoce1779_2|597300|organism=Nannochloropsis oceanica|type=mRNA|length=1546bp|location=Sequence derived from alignment at scaffold_18:123045..124590+ (Nannochloropsis oceanica)
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTC
CTTCTCGTCATCGATCCCCACGGCTGCAGCGGTCGCGGACATAGCTACTC
AAGAAGTTATCGATCGCATCGAAGAGTTCATTGCCGCCTGGATTGCGTCC
TTCAGCAACCCCGCCATCACGGAACCCCCTACATTTGAGGTCCCTCGACG
CAACCAATCCAACTCCACCTACCACAAGGGCGCCACCGGTGGCGATGACA
CCGACACGATGGAGCAAGACCGACTGCCGGGCCTGCGACAAGGAAGTGAA
ATGATCGTGAAAAAGCTGAAAGGGAAGGGCGCGCGTTCTTATGCTGCCAT
TTTTGCCGTGTTGGCTTTCTCACACCGCGTGCTGCTTTCGGGGCAGATTG
CGACGAGTCGAGAGTTGTGGTATCACTACAAGACGTCGCGGAAGTGCTTC
AAGAGCCAGGCGGACTGTGATCGGGCCGTGCTTGATGCAGCGGCGCTGTT
GGGCGTTGCGAGGCATCAACTAGGGATAGTGGGGGCGGCGAAGGGGTTGT
TTGCAGGGTATTTCCGGTTTCGACCGTTGGGAAGTTTGATGGCCTGGACG
GAGTGTAATGCGAGTGGAGGAGAGGGAGGAGGTGGAGGAGGGGGTGGAAC
GTTGATTGATAGTCGCTGGATAACTGAGGTGATGGAGATTGAGTGCGCGG
GGGGGCATCGACCAAGATATGTGCTGGTGGTGGAGAAAGAGTGTGTGTTC
CAACGGCTGCTGGGGGATGGATTATGCGACGCGGCCGGAGGTGTGGTACT
TATTACAGGGAAAGGCTACCCGGATTTGGCCACGCGCGCTTGTTTGAAGG
CTTTGGTGGATTGTTGGGGAGTTACGGTGCTCGGCCTATGTGACTGTAAT
CCGTGAGTATTTCTTACGGTTCTGGTTGGAGGGATGCGTGTATGCGCGTG
TGTGCGTCTATCTGTGTCCCTTTTACAGTGCTAGTCAGGTTAGTGTCAGA
GTCTTCGCCCTCCCTCCCCCGCTTTTTCCCTCCCCCTCCTCTCACATTCA
GGCACGGCATCGCTCTCCTCCTCACCTACAAATGCGGCTCCTTGCGCATG
CCCGAGTCCCAGCTTTACCGCGTGCCACTGCGCTGGCTCGGTGTGCGGCC
TTCGCAGATTTTGCAGCGTTTTGACCTACCCGACGAGGTTTTTCAGGACT
TTTCGGAGGGGGACGCGAGGAAGTGTCGGTCGTTACTGGCGTCTCCTTTT
TGTCAGGCGCACCCCAGGTGGAGGGAGGAGGTGGAGGCAATGGTATGCTT
TTCTCATGTGTGTATATGTGCTGTTTGGCTTTCACGATTCGCGGCGGTAC
TGATGTTCGTACTTTGTCCACCACTCGCTTTCTCCCTCTCGCCCTCCCCC
GGTCCCGCGCACACACAGGCCGACGAACACATGAAATGCGAGCTCGAGGC
GCTCAACACCTTCTCGGGCACTGAGGGTCGACGTGATTTTCTATGCCAGT
TTGTCGTGTCCTCCTTGATGTCAGGAGACCACCTGAGCTAAGCTGT

Coding sequence (CDS) from alignment at scaffold_18:123045..124590+

>mRNA_6542 ID=mRNA_6542|Name=jgi.p|Nanoce1779_2|597300|organism=Nannochloropsis oceanica|type=CDS|length=2268bp|location=Sequence derived from alignment at scaffold_18:123045..124590+ (Nannochloropsis oceanica)
ATGGAGCAAGACCGACTGCCGGGCCTGCGACAAGGAAGTGAAATGATCGT
GAAAAAGCTGAAAGGGAAGGGCGCGCGTTCTTATGCTGCCATTTTTGCCG
TGTTGGCTTTCTCACACCGCGTGCTGCTTTCGGGGCAGATTGCGACGAGT
CGAGAGTTGTGGTATCACTACAAGACGTCGCGGAAGTGCTTCAAGAGCCA
GGCGGACTGTGATCGGGCCGTGCTTGATGCAGCGGCGCTGTTGGGCGTTG
CGAGGCATCAACTAGGGATAGTGGGGGCGGCGAAGGGGTTGTTTGCAGGG
TATTTCCGGTTTCGACCGTTGGGAAGTTTGATGGCCTGGACGGAGTGTAA
TGCGAGTGGAGGAGAGGGAGGAGGTGGAGGAGGGGGTGGAACGTTGATTG
ATAGTCGCTGGATAACTGAGGTGATGGAGATTGAGTGCGCGGGGGGGCAT
CGACCAAGATATGTGCTGGTGGTGGAGAAAGAGTGTGTGTTCCAACGGCT
GCTGGGGGATGGATTATGCGACGCGGCCGGAGGTGTGGTACTTATTACAG
GGAAAGGCTACCCGGATTTGGCCACGCGCGCTTGTTTGAAGGCTTTGGTG
GATTGTTGGGGAGTTACGGTGCTCGGCCTATGTGACTGTAATCCGCACGG
CATCGCTCTCCTCCTCACCTACAAATGCGGCTCCTTGCGCATGCCCGAGT
CCCAGCTTTACCGCGTGCCACTGCGCTGGCTCGGTGTGCGGCCTTCGCAG
ATTTTGCAGCGTTTTGACCTACCCGACGAGGTTTTTCAGGACTTTTCGGA
GGGGGACGCGAGGAAGTGTCGGTCGTTACTGGCGTCTCCTTTTTGTCAGG
CGCACCCCAGGTGGAGGGAGGAGGTGGAGGCAATGGTATGCTTTTCTCAT
GTGTGTATATGTGCTGTTTGGCTTTCACGATTCGCGGCGGTACTGATGTT
CGTACTTTGTCCACCACTCGCTTTCTCCCTCTCGCCCTCCCCCGGTCCCG
CGCACACACAGGCCGACGAACACATGAAATGCGAGCTCGAGGCGCTCAAC
ACCTTCTCGGGCACTGAGGGTCGACGTGATTTTCTATGCCAGTTTGTCGT
GTCCTCCTTGATGTCAGGAGACCACCTGAGCTAAATGGAGCAAGACCGAC
TGCCGGGCCTGCGACAAGGAAGTGAAATGATCGTGAAAAAGCTGAAAGGG
AAGGGCGCGCGTTCTTATGCTGCCATTTTTGCCGTGTTGGCTTTCTCACA
CCGCGTGCTGCTTTCGGGGCAGATTGCGACGAGTCGAGAGTTGTGGTATC
ACTACAAGACGTCGCGGAAGTGCTTCAAGAGCCAGGCGGACTGTGATCGG
GCCGTGCTTGATGCAGCGGCGCTGTTGGGCGTTGCGAGGCATCAACTAGG
GATAGTGGGGGCGGCGAAGGGGTTGTTTGCAGGGTATTTCCGGTTTCGAC
CGTTGGGAAGTTTGATGGCCTGGACGGAGTGTAATGCGAGTGGAGGAGAG
GGAGGAGGTGGAGGAGGGGGTGGAACGTTGATTGATAGTCGCTGGATAAC
TGAGGTGATGGAGATTGAGTGCGCGGGGGGGCATCGACCAAGATATGTGC
TGGTGGTGGAGAAAGAGTGTGTGTTCCAACGGCTGCTGGGGGATGGATTA
TGCGACGCGGCCGGAGGTGTGGTACTTATTACAGGGAAAGGCTACCCGGA
TTTGGCCACGCGCGCTTGTTTGAAGGCTTTGGTGGATTGTTGGGGAGTTA
CGGTGCTCGGCCTATGTGACTGTAATCCGCACGGCATCGCTCTCCTCCTC
ACCTACAAATGCGGCTCCTTGCGCATGCCCGAGTCCCAGCTTTACCGCGT
GCCACTGCGCTGGCTCGGTGTGCGGCCTTCGCAGATTTTGCAGCGTTTTG
ACCTACCCGACGAGGTTTTTCAGGACTTTTCGGAGGGGGACGCGAGGAAG
TGTCGGTCGTTACTGGCGTCTCCTTTTTGTCAGGCGCACCCCAGGTGGAG
GGAGGAGGTGGAGGCAATGGTATGCTTTTCTCATGTGTGTATATGTGCTG
TTTGGCTTTCACGATTCGCGGCGGTACTGATGTTCGTACTTTGTCCACCA
CTCGCTTTCTCCCTCTCGCCCTCCCCCGGTCCCGCGCACACACAGGCCGA
CGAACACATGAAATGCGAGCTCGAGGCGCTCAACACCTTCTCGGGCACTG
AGGGTCGACGTGATTTTCTATGCCAGTTTGTCGTGTCCTCCTTGATGTCA
GGAGACCACCTGAGCTAA

Synonyms

Publications