jgi.p|Nanoce1779_2|597290, mRNA_6541 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597290
Unique NamemRNA_6541
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1387
Alignment locationscaffold_18:119147..120885 -

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Properties
Property NameValue
TranscriptId597376
TrackFilteredModels2
ProteinId597290
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:119147..120885 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597290gene_6541Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597290mRNA_6541-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6541CDS_6541Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6541 ID=mRNA_6541|Name=jgi.p|Nanoce1779_2|597290|organism=Nannochloropsis oceanica|type=mRNA|length=1387bp
ACAGAGATGAAGGACACGAGATCCCTTACCTTCTTTTTCGCTCCCTACCG
TTGGTATTCCCTATCTTTGTGTTGTTGTTGCCTGTTGCTCTTCCCGACCA
TGCTTTCCGCCTTGATCACCACGACCTCCCGCCTCCGGCCCAACTTGAGC
GGCCGCCGCGCGTTGACTACGACCACCAGCATGCGCGCTGGAATTGGTGG
AGGCTATAACAATCAGTCGTACCAGTACCGTCGCAATGTGCAGCGGCCTA
CGCCTCGGGGCCCGGCCTTCCGGCGCTTCATGACCAGTCCCCCCACTCAT
GCCAATGCCGGCAGCGATGACTTCGTGCCCATCGAGCCTGCGACTCTGAA
TTGGGAAAAGGTTGGCCCGGACCAAGATGTATTTATAAGTGCCTTGTCGC
AAAATGGCCATGTAAATGTGAAGGTTATCTCGGCTAAGAACATGGTGCAG
GCCATAAAGGAAAAGAGGGAGTTGTCAGGAGTCGCCACGGAGCTCCTTGG
GCGAGTCATGCTTAGCACGATGCTGGTGGCCAACGGCATCAAGGACGAAG
AGACCTTGCAGCTCACTTTCAACGGTGATGGGCAAGCCAAGGGAGTCATG
GCCATTTCGGACGGAGCATGCAACGTCCGTGCGTGGATTGGTAATAGCGA
CTTGGATGATTTACGGGACCCCGAAACACTTAAAGCGGACATTAAATCCG
CAGTCGGGAAAGGCACCTTACAAGTTGTCAAGAACCATCCATCCTGGCGT
ATTCCTTATAATGGGGTGGTGGAGATTGCCTCAGGGGAGGTGGCCCCGGA
TGTGGCGTTCTACCTGGCGTCTTCCGAGCAGCGCAATACGGCGTTAGGTG
TCGGGTTGCAGGTGGATCCATTGAGCGGGAACGTCGCTTCCGCCGGTGGG
TTTTATGTGGAAATGATGCCTGGGGTGGAGGAGGAGAGTGTGCTGAAGGT
GGAAGTGAATCTAGCGGTGATCAAGGAGCGGTTTGGGAGCGTGGATGCGG
GGCATTTGTTTGCGCTAAAGGAGCCGATAACGCCTTACAAGCTGGTGAAG
ATGCTCTTAGATGGCCTCGGCGTCAGCATGGCTTCCGAAAGCCTGCCAAC
CTACCGCTGCACCTGCTCGGCAGAAAAGGTCTTTCGTGCCTTGAGCCTAC
TGGGGGAGGAGGAGGTTGAGGACATCCTGGCAAAAGAGGGGGTTATTGAC
GCGAAATGTGAGTTCTGTGCCGAGAGGTATGAGTTGACTAGGGAGCAGTT
GATTGAGCTTAGAGAGCAGGCGCTGGCGGCGGCGGCGGCGGGGGAGCCCT
GGCCGGCGACCCGGTGAGAGAGAGAGAGGAGAAGCACAGGAGCAAAATGG
CTAAGAATTATAATATTAATGAAGAGGCAGCTGTCAA
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protein sequence of jgi.p|Nanoce1779_2|597290

>mRNA_6541-protein ID=mRNA_6541-protein|Name=jgi.p|Nanoce1779_2|597290|organism=Nannochloropsis oceanica|type=polypeptide|length=437bp
MKDTRSLTFFFAPYRWYSLSLCCCCLLLFPTMLSALITTTSRLRPNLSGR
RALTTTTSMRAGIGGGYNNQSYQYRRNVQRPTPRGPAFRRFMTSPPTHAN
AGSDDFVPIEPATLNWEKVGPDQDVFISALSQNGHVNVKVISAKNMVQAI
KEKRELSGVATELLGRVMLSTMLVANGIKDEETLQLTFNGDGQAKGVMAI
SDGACNVRAWIGNSDLDDLRDPETLKADIKSAVGKGTLQVVKNHPSWRIP
YNGVVEIASGEVAPDVAFYLASSEQRNTALGVGLQVDPLSGNVASAGGFY
VEMMPGVEEESVLKVEVNLAVIKERFGSVDAGHLFALKEPITPYKLVKML
LDGLGVSMASESLPTYRCTCSAEKVFRALSLLGEEEVEDILAKEGVIDAK
CEFCAERYELTREQLIELREQALAAAAAGEPWPATR*
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mRNA from alignment at scaffold_18:119147..120885-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6541 ID=mRNA_6541|Name=jgi.p|Nanoce1779_2|597290|organism=Nannochloropsis oceanica|type=mRNA|length=1739bp|location=Sequence derived from alignment at scaffold_18:119147..120885- (Nannochloropsis oceanica)
ACAGAGATGAAGGACACGAGATCCCTTACCTTCTTTTTCGCTCCCTACCG
TTGGTATTCCCTATCTTTGTGTTGTTGTTGCCTGTTGCTCTTCCCGACCA
TGCTTTCCGCCTTGATCACCACGACCTCCCGCCTCCGGCCCAACTTGAGC
GGCCGCCGCGCGTTGACTACGACCACCAGCATGCGCGCTGGAATTGGTGG
AGGCTATAACAATCAGTCGTACCAGTACCGTCGCAATGTGCAGCGGCCTA
CGCCTCGGGGCCCGGCCTTCCGGCGCTTCATGACCAGTCCCCCCACTCAT
GCCAATGCCGGCAGCGATGACTTCGTGCCCATCGAGCCTGCGACTCTGAA
TTGGGAAAAGGTTGGCCCGGACCAAGATGTATTTATAAGTGCCTTGTCGC
AAAATGGCCATGTAAATGTGAAGGTTATCTCGGCTAAGAACATGGTGCAG
GCCATAAAGGAAAAGAGGGAGTTGTCAGGAGTCGCCACGGAGCTCCTTGG
GCGAGTCATGCTTAGCACGATGCTGGTGGCCAACGGCATCAAGGACGAAG
AGACCTTGCAGCTCACTTTCAACGGTGATGGGCAAGCCAAGGGAGTCATG
GCCATTTCGGACGGAGCATGCAACGTCCGTGCGTGGATTGGTAATAGCGA
CTTGGATGATTTACGGGACCCCGAAACACTTAAAGCGGACATTAAATCCG
CAGTCGGGAAAGGCACCTTACAAGTTGTCAAGAACCATCCATCCTGGCGT
ATTCCTTATAATGGGGTGGTGGAGATTGCCTCAGGGGAGGTGGCCCCGGA
TGTGGCGTTCTACCTGGCGTCTTCCGAGCAGCGCAATACGGCGTTAGGTG
TCGGGTTGCAGGTGGATCCATTGAGCGGGAACGTCGCTTCCGCCGGTGGG
TTTTATGTGGAAATGATGCCTGGGGTGGAGGAGGAGAGTGTGCTGAAGGT
GGAAGTGAATCTAGCGGTGATCAAGGAGCGGTTTGGGAGCGTGGATGCGG
GGCATTTGTTTGCGCTAAAGGAGCCGATAACGCCTTACAAGCTGGTGAAG
ATGCTCTTAGATGGTAAATGGGGAAAAGGGGGAGGGAGAGAAGGGAGGGA
AGAAGGAGAGAGAGACGTAGGGCGTGCGCGGAAGGTAGGTTGTCAACGTT
GAGGGAACCGGTGGCGCTGTGTGTGACGGTCAGGACGGTGTTGGACTAAA
CGGGGGGAGAAAGGAGGGAGGGAGGGAGGGAGGGAGGGACAGAAGGGAGG
GAGGAATGGGTGGTTTGGACGTGTAGATATAAGTGTAACGTGTGACTGGT
TTGTAGTAGGTTGACAGGCGGCTCCACATTTTGTGTCCCAACACTTACGT
TGTCTCTGTAGATTCACTTACCCATCGTCCTCTCCCCTCCGACCCTCCAT
CCCTCCCTCCCCCAGGCCTCGGCGTCAGCATGGCTTCCGAAAGCCTGCCA
ACCTACCGCTGCACCTGCTCGGCAGAAAAGGTCTTTCGTGCCTTGAGCCT
ACTGGGGGAGGAGGAGGTTGAGGACATCCTGGCAAAAGAGGGGGTTATTG
ACGCGAAATGTGAGTTCTGTGCCGAGAGGTATGAGTTGACTAGGGAGCAG
TTGATTGAGCTTAGAGAGCAGGCGCTGGCGGCGGCGGCGGCGGGGGAGCC
CTGGCCGGCGACCCGGTGAGAGAGAGAGAGGAGAAGCACAGGAGCAAAAT
GGCTAAGAATTATAATATTAATGAAGAGGCAGCTGTCAA
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Coding sequence (CDS) from alignment at scaffold_18:119147..120885-

>mRNA_6541 ID=mRNA_6541|Name=jgi.p|Nanoce1779_2|597290|organism=Nannochloropsis oceanica|type=CDS|length=2622bp|location=Sequence derived from alignment at scaffold_18:119147..120885- (Nannochloropsis oceanica)
GCCTCGGCGTCAGCATGGCTTCCGAAAGCCTGCCAACCTACCGCTGCACC
TGCTCGGCAGAAAAGGTCTTTCGTGCCTTGAGCCTACTGGGGGAGGAGGA
GGTTGAGGACATCCTGGCAAAAGAGGGGGTTATTGACGCGAAATGTGAGT
TCTGTGCCGAGAGGTATGAGTTGACTAGGGAGCAGTTGATTGAGCTTAGA
GAGCAGGCGCTGGCGGCGGCGGCGGCGGGGGAGCCCTGGCCGGCGACCCG
GTGAATGAAGGACACGAGATCCCTTACCTTCTTTTTCGCTCCCTACCGTT
GGTATTCCCTATCTTTGTGTTGTTGTTGCCTGTTGCTCTTCCCGACCATG
CTTTCCGCCTTGATCACCACGACCTCCCGCCTCCGGCCCAACTTGAGCGG
CCGCCGCGCGTTGACTACGACCACCAGCATGCGCGCTGGAATTGGTGGAG
GCTATAACAATCAGTCGTACCAGTACCGTCGCAATGTGCAGCGGCCTACG
CCTCGGGGCCCGGCCTTCCGGCGCTTCATGACCAGTCCCCCCACTCATGC
CAATGCCGGCAGCGATGACTTCGTGCCCATCGAGCCTGCGACTCTGAATT
GGGAAAAGGTTGGCCCGGACCAAGATGTATTTATAAGTGCCTTGTCGCAA
AATGGCCATGTAAATGTGAAGGTTATCTCGGCTAAGAACATGGTGCAGGC
CATAAAGGAAAAGAGGGAGTTGTCAGGAGTCGCCACGGAGCTCCTTGGGC
GAGTCATGCTTAGCACGATGCTGGTGGCCAACGGCATCAAGGACGAAGAG
ACCTTGCAGCTCACTTTCAACGGTGATGGGCAAGCCAAGGGAGTCATGGC
CATTTCGGACGGAGCATGCAACGTCCGTGCGTGGATTGGTAATAGCGACT
TGGATGATTTACGGGACCCCGAAACACTTAAAGCGGACATTAAATCCGCA
GTCGGGAAAGGCACCTTACAAGTTGTCAAGAACCATCCATCCTGGCGTAT
TCCTTATAATGGGGTGGTGGAGATTGCCTCAGGGGAGGTGGCCCCGGATG
TGGCGTTCTACCTGGCGTCTTCCGAGCAGCGCAATACGGCGTTAGGTGTC
GGGTTGCAGGTGGATCCATTGAGCGGGAACGTCGCTTCCGCCGGTGGGTT
TTATGTGGAAATGATGCCTGGGGTGGAGGAGGAGAGTGTGCTGAAGGTGG
AAGTGAATCTAGCGGTGATCAAGGAGCGGTTTGGGAGCGTGGATGCGGGG
CATTTGTTTGCGCTAAAGGAGCCGATAACGCCTTACAAGCTGGTGAAGAT
GCTCTTAGATGGCCTCGGCGTCAGCATGGCTTCCGAAAGCCTGCCAACCT
ACCGCTGCACCTGCTCGGCAGAAAAGGTCTTTCGTGCCTTGAGCCTACTG
GGGGAGGAGGAGGTTGAGGACATCCTGGCAAAAGAGGGGGTTATTGACGC
GAAATGTGAGTTCTGTGCCGAGAGGTATGAGTTGACTAGGGAGCAGTTGA
TTGAGCTTAGAGAGCAGGCGCTGGCGGCGGCGGCGGCGGGGGAGCCCTGG
CCGGCGACCCGGTGAATGAAGGACACGAGATCCCTTACCTTCTTTTTCGC
TCCCTACCGTTGGTATTCCCTATCTTTGTGTTGTTGTTGCCTGTTGCTCT
TCCCGACCATGCTTTCCGCCTTGATCACCACGACCTCCCGCCTCCGGCCC
AACTTGAGCGGCCGCCGCGCGTTGACTACGACCACCAGCATGCGCGCTGG
AATTGGTGGAGGCTATAACAATCAGTCGTACCAGTACCGTCGCAATGTGC
AGCGGCCTACGCCTCGGGGCCCGGCCTTCCGGCGCTTCATGACCAGTCCC
CCCACTCATGCCAATGCCGGCAGCGATGACTTCGTGCCCATCGAGCCTGC
GACTCTGAATTGGGAAAAGGTTGGCCCGGACCAAGATGTATTTATAAGTG
CCTTGTCGCAAAATGGCCATGTAAATGTGAAGGTTATCTCGGCTAAGAAC
ATGGTGCAGGCCATAAAGGAAAAGAGGGAGTTGTCAGGAGTCGCCACGGA
GCTCCTTGGGCGAGTCATGCTTAGCACGATGCTGGTGGCCAACGGCATCA
AGGACGAAGAGACCTTGCAGCTCACTTTCAACGGTGATGGGCAAGCCAAG
GGAGTCATGGCCATTTCGGACGGAGCATGCAACGTCCGTGCGTGGATTGG
TAATAGCGACTTGGATGATTTACGGGACCCCGAAACACTTAAAGCGGACA
TTAAATCCGCAGTCGGGAAAGGCACCTTACAAGTTGTCAAGAACCATCCA
TCCTGGCGTATTCCTTATAATGGGGTGGTGGAGATTGCCTCAGGGGAGGT
GGCCCCGGATGTGGCGTTCTACCTGGCGTCTTCCGAGCAGCGCAATACGG
CGTTAGGTGTCGGGTTGCAGGTGGATCCATTGAGCGGGAACGTCGCTTCC
GCCGGTGGGTTTTATGTGGAAATGATGCCTGGGGTGGAGGAGGAGAGTGT
GCTGAAGGTGGAAGTGAATCTAGCGGTGATCAAGGAGCGGTTTGGGAGCG
TGGATGCGGGGCATTTGTTTGCGCTAAAGGAGCCGATAACGCCTTACAAG
CTGGTGAAGATGCTCTTAGATG
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Synonyms
Publications