jgi.p|Nanoce1779_2|597288, mRNA_6540 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|597288
Unique Name	mRNA_6540
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1681
Alignment location	scaffold_18:117370..119183 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	597374
Track	FilteredModels2
ProteinId	597288

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:117370..119183 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597288	gene_6540	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597288	mRNA_6540-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6540	CDS_6540	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:117370..119183+
coding sequence from alignment at scaffold_18:117370..119183+

mRNA sequence

>mRNA_6540 ID=mRNA_6540|Name=jgi.p|Nanoce1779_2|597288|organism=Nannochloropsis oceanica|type=mRNA|length=1681bp
ACAGAAAGACATGCCACGTCCACCCGCTCTATCTACCACTGTGGCAGGTG
CCATTATTAGGCGCTGGTACTTTGGAGGCTGGGCAGGTGGACGTCGCTCC
TGCATTGCTCTCTCCGTCTACTCCTCGTCAACAGCTCACTCCCGCAGCAG
CATGACAACGTTCTCGATGCCAAGTTGGGTATACTCCTCGTCATCCTCCT
CCTCACCCTCTTCATTACACGACAAAACGCTGCCGTCCAGCTCACGCCAA
CAGCCCCGGCCCCCTACCTTCCTACGATCTGCTGGCCTTGCCTCCACAGC
ACACAACCACGACACGCACAAGCCTCCCCCTTTCTGCTGCGGCAACCCTA
ACTGCGAGCATCAAGGGGCCGACTTGAAGGAAGATGGCTATAATTACGAA
AATGAAGAAGTCAGCGCCAGCAAGCACAACCATCCCCATACGCACACGGA
CGAGCTGCCCCCCTGCTGGGCCTGCGGGAAACCCACCGGCTGCTGCAACT
TCTTCTGCGCCTGCGGCAAGATTCAACCCCTTATTGGACACTGCTCCTAC
TTCGAGACATTTGGATTGCCTAAGTCCTACGACCTTGACCCTAAAGAGCT
CGAGCGTGCGTTTTTTGAACTGCAAAAGACCATGCACCCGGACAGATACA
TGCAAAAATCGTCGACTGAACAAGACTTTTCTCGTTCCAACAGCACTTAC
GTCAATGTCGCGTATCGCACGTTGAAAGATCCAACGTTGCGCGCGAAATA
CTTGCTGCAATTGGAAGGGGTCCGGGCACTGGATGAGAGGAGTAAGACGG
CCGATCCTGCGTTGTTGATGGAGGTGATGGAGCTGAGGGAGGAGGTGGAC
GAGAGCAGGAAGCCGGAGGCGCTGATAAGGTTGATTAGAAGAAATAGGAA
GGCAATCGACGCAGTGAAAAAAGAACTGATACAGCTCTATACCGAGAAGG
AATGGACGCGGATGGTAGCCCTGACGAACCGACTGCAGTATTTGAGTAAG
GTTGGATTCGAGGCCCGCGAAAAATTGGACCTGCTGGAAGGAGAGGAAGA
GAAGGAGCAACGCCGAGCGCGATTGGAGCGGGAGGAAGAAGAGGAGGAGG
AGGCGACAGCGAGGAAGGGGCTGCATGCATGAGGCATGCATTCATGAAAG
AAGTTGGCCCGAGAAGATCGGATTGCGCTTGATGAGGGCAGGTGTTGACG
GTAGCACCAGTAGTAATAAGAGTAGCAGCAGTAGGTGTGAGAAGAAGTTG
AGAGAGGCAGCAGTTGCCTGCGAGGCGGGTGTGCTTTATGGCATGTTGTA
CAGGAAAGAGCAAGAGAAGAAGATATGGGAATGTTTTAGCACTTGTATAA
ATGGTCGATGATAGATTGTGGGAGGCGGCGATAACGAGGCTGTGAAAGGC
TTGGGTTGGAGCGAGAGACGGTGTAAGTAAGTGCACTCTGTTAGGGTTAG
TAATAGCAAGCTAACTTGAAATGTGCGTGGGCGGTGATACTGTGAAGAAG
AACAAACAAATCTATGATGATGTTTGGTGGTGTTGCGGAATAGGATTCTG
AAAGAGTAGAAGGTGAAGAAGATGAAGGAAAGGAGGGAGATGAAAGAGAT
ACGGGAGAGGGGGGAACATAACCAGACACAAACAAATTCAATAATTGACA
GCTGCCTCTTCATTAATATTATAATTCTTAG

protein sequence of jgi.p|Nanoce1779_2|597288

>mRNA_6540-protein ID=mRNA_6540-protein|Name=jgi.p|Nanoce1779_2|597288|organism=Nannochloropsis oceanica|type=polypeptide|length=374bp
MPRPPALSTTVAGAIIRRWYFGGWAGGRRSCIALSVYSSSTAHSRSSMTT
FSMPSWVYSSSSSSSPSSLHDKTLPSSSRQQPRPPTFLRSAGLASTAHNH
DTHKPPPFCCGNPNCEHQGADLKEDGYNYENEEVSASKHNHPHTHTDELP
PCWACGKPTGCCNFFCACGKIQPLIGHCSYFETFGLPKSYDLDPKELERA
FFELQKTMHPDRYMQKSSTEQDFSRSNSTYVNVAYRTLKDPTLRAKYLLQ
LEGVRALDERSKTADPALLMEVMELREEVDESRKPEALIRLIRRNRKAID
AVKKELIQLYTEKEWTRMVALTNRLQYLSKVGFEAREKLDLLEGEEEKEQ
RRARLEREEEEEEEATARKGLHA*

mRNA from alignment at scaffold_18:117370..119183+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6540 ID=mRNA_6540|Name=jgi.p|Nanoce1779_2|597288|organism=Nannochloropsis oceanica|type=mRNA|length=1814bp|location=Sequence derived from alignment at scaffold_18:117370..119183+ (Nannochloropsis oceanica)
ACAGAAAGACATGCCACGTCCACCCGCTCTATCTACCACTGTGGCAGGTG
CCATTATTAGGCGCTGGTACTTTGGAGGCTGGGCAGGTGGACGTCGCTCC
TGCATTGCTCTCTCCGTCTACTCCTCGTCAACAGCTCACTCCCGCAGCAG
CATGACAACGTTCTCGATGCCAAGTTGGGTATACTCCTCGTCATCCTCCT
CCTCACCCTCTTCATTACACGACAAAACGCTGCCGTCCAGCTCACGCCAA
CAGCCCCGGCCCCCTACCTTCCTACGATCTGCTGGCCTTGCCTCCACAGC
ACACAACCACGACACGCACAAGCCTCCCCCTTTCTGCTGCGGCAACCCTA
ACTGCGAGCATCAAGGGGCCGACTTGAAGGAAGATGGCTATAATTACGAA
AATGAAGAAGTCAGCGCCAGCAAGCACAACCATCCCCATACGCACACGGA
CGAGCTGCCCCCCTGCTGGGCCTGCGGGAAACCCACCGGCTGCTGCAACT
TCTTCTGCGCCTGCGGCAAGATTCAACCCCTTATTGGACACTGCTCCTAC
TTCGAGACATTTGGATTGCCTAAGTCCTACGACCTTGACCCTAAAGAGCT
CGAGCGTGCGTTTTTTGAACTGCAAAAGACCATGCACCCGGACAGATACA
TGCAAAAATCGTCGACTGAACAAGACTTTTCTCGTTCCAACAGCACTTAC
GTCAATGTCGCGTATCGCACGTTGAAAGATCCAACGTTGCGCGCGAAATA
CTTGCTGCAATTGGAAGGGGTCCGGGCACTGGATGAGAGGAGTAAGACGG
CCGATCCTGCGTTGTTGATGGAGGTGATGGAGCTGAGGGAGGAGGTGGAC
GAGAGCAGGAAGCCGGAGGCGCTGATAAGGTTGATTAGAAGAAATAGGAA
GGCAATCGACGCAGTGAAAAAAGAACTGATACAGCTCTATACCGAGAAGG
TACGTGGTGGAGGCGTTGGGTTTGAGGGAGGGCTGGGTGGGTGGGGTGCA
ATGCGGTGCGCTTTGCTCCCGCACGTCTCCCATAAGTCTCATTCCCTCCC
CCCTCCCTCCTTATCTCCCTCCCTTCGTTCAGGAATGGACGCGGATGGTA
GCCCTGACGAACCGACTGCAGTATTTGAGTAAGGTTGGATTCGAGGCCCG
CGAAAAATTGGACCTGCTGGAAGGAGAGGAAGAGAAGGAGCAACGCCGAG
CGCGATTGGAGCGGGAGGAAGAAGAGGAGGAGGAGGCGACAGCGAGGAAG
GGGCTGCATGCATGAGGCATGCATTCATGAAAGAAGTTGGCCCGAGAAGA
TCGGATTGCGCTTGATGAGGGCAGGTGTTGACGGTAGCACCAGTAGTAAT
AAGAGTAGCAGCAGTAGGTGTGAGAAGAAGTTGAGAGAGGCAGCAGTTGC
CTGCGAGGCGGGTGTGCTTTATGGCATGTTGTACAGGAAAGAGCAAGAGA
AGAAGATATGGGAATGTTTTAGCACTTGTATAAATGGTCGATGATAGATT
GTGGGAGGCGGCGATAACGAGGCTGTGAAAGGCTTGGGTTGGAGCGAGAG
ACGGTGTAAGTAAGTGCACTCTGTTAGGGTTAGTAATAGCAAGCTAACTT
GAAATGTGCGTGGGCGGTGATACTGTGAAGAAGAACAAACAAATCTATGA
TGATGTTTGGTGGTGTTGCGGAATAGGATTCTGAAAGAGTAGAAGGTGAA
GAAGATGAAGGAAAGGAGGGAGATGAAAGAGATACGGGAGAGGGGGGAAC
ATAACCAGACACAAACAAATTCAATAATTGACAGCTGCCTCTTCATTAAT
ATTATAATTCTTAG

Coding sequence (CDS) from alignment at scaffold_18:117370..119183+

>mRNA_6540 ID=mRNA_6540|Name=jgi.p|Nanoce1779_2|597288|organism=Nannochloropsis oceanica|type=CDS|length=2244bp|location=Sequence derived from alignment at scaffold_18:117370..119183+ (Nannochloropsis oceanica)
ATGCCACGTCCACCCGCTCTATCTACCACTGTGGCAGGTGCCATTATTAG
GCGCTGGTACTTTGGAGGCTGGGCAGGTGGACGTCGCTCCTGCATTGCTC
TCTCCGTCTACTCCTCGTCAACAGCTCACTCCCGCAGCAGCATGACAACG
TTCTCGATGCCAAGTTGGGTATACTCCTCGTCATCCTCCTCCTCACCCTC
TTCATTACACGACAAAACGCTGCCGTCCAGCTCACGCCAACAGCCCCGGC
CCCCTACCTTCCTACGATCTGCTGGCCTTGCCTCCACAGCACACAACCAC
GACACGCACAAGCCTCCCCCTTTCTGCTGCGGCAACCCTAACTGCGAGCA
TCAAGGGGCCGACTTGAAGGAAGATGGCTATAATTACGAAAATGAAGAAG
TCAGCGCCAGCAAGCACAACCATCCCCATACGCACACGGACGAGCTGCCC
CCCTGCTGGGCCTGCGGGAAACCCACCGGCTGCTGCAACTTCTTCTGCGC
CTGCGGCAAGATTCAACCCCTTATTGGACACTGCTCCTACTTCGAGACAT
TTGGATTGCCTAAGTCCTACGACCTTGACCCTAAAGAGCTCGAGCGTGCG
TTTTTTGAACTGCAAAAGACCATGCACCCGGACAGATACATGCAAAAATC
GTCGACTGAACAAGACTTTTCTCGTTCCAACAGCACTTACGTCAATGTCG
CGTATCGCACGTTGAAAGATCCAACGTTGCGCGCGAAATACTTGCTGCAA
TTGGAAGGGGTCCGGGCACTGGATGAGAGGAGTAAGACGGCCGATCCTGC
GTTGTTGATGGAGGTGATGGAGCTGAGGGAGGAGGTGGACGAGAGCAGGA
AGCCGGAGGCGCTGATAAGGTTGATTAGAAGAAATAGGAAGGCAATCGAC
GCAGTGAAAAAAGAACTGATACAGCTCTATACCGAGAAGGAATGGACGCG
GATGGTAGCCCTGACGAACCGACTGCAGTATTTGAGTAAGGTTGGATTCG
AGGCCCGCGAAAAATTGGACCTGCTGGAAGGAGAGGAAGAGAAGGAGCAA
CGCCGAGCGCGATTGGAGCGGGAGGAAGAAGAGGAGGAGGAGGCGACAGC
GAGGAAGGGGCTGCATGCATGAATGCCACGTCCACCCGCTCTATCTACCA
CTGTGGCAGGTGCCATTATTAGGCGCTGGTACTTTGGAGGCTGGGCAGGT
GGACGTCGCTCCTGCATTGCTCTCTCCGTCTACTCCTCGTCAACAGCTCA
CTCCCGCAGCAGCATGACAACGTTCTCGATGCCAAGTTGGGTATACTCCT
CGTCATCCTCCTCCTCACCCTCTTCATTACACGACAAAACGCTGCCGTCC
AGCTCACGCCAACAGCCCCGGCCCCCTACCTTCCTACGATCTGCTGGCCT
TGCCTCCACAGCACACAACCACGACACGCACAAGCCTCCCCCTTTCTGCT
GCGGCAACCCTAACTGCGAGCATCAAGGGGCCGACTTGAAGGAAGATGGC
TATAATTACGAAAATGAAGAAGTCAGCGCCAGCAAGCACAACCATCCCCA
TACGCACACGGACGAGCTGCCCCCCTGCTGGGCCTGCGGGAAACCCACCG
GCTGCTGCAACTTCTTCTGCGCCTGCGGCAAGATTCAACCCCTTATTGGA
CACTGCTCCTACTTCGAGACATTTGGATTGCCTAAGTCCTACGACCTTGA
CCCTAAAGAGCTCGAGCGTGCGTTTTTTGAACTGCAAAAGACCATGCACC
CGGACAGATACATGCAAAAATCGTCGACTGAACAAGACTTTTCTCGTTCC
AACAGCACTTACGTCAATGTCGCGTATCGCACGTTGAAAGATCCAACGTT
GCGCGCGAAATACTTGCTGCAATTGGAAGGGGTCCGGGCACTGGATGAGA
GGAGTAAGACGGCCGATCCTGCGTTGTTGATGGAGGTGATGGAGCTGAGG
GAGGAGGTGGACGAGAGCAGGAAGCCGGAGGCGCTGATAAGGTTGATTAG
AAGAAATAGGAAGGCAATCGACGCAGTGAAAAAAGAACTGATACAGCTCT
ATACCGAGAAGGAATGGACGCGGATGGTAGCCCTGACGAACCGACTGCAG
TATTTGAGTAAGGTTGGATTCGAGGCCCGCGAAAAATTGGACCTGCTGGA
AGGAGAGGAAGAGAAGGAGCAACGCCGAGCGCGATTGGAGCGGGAGGAAG
AAGAGGAGGAGGAGGCGACAGCGAGGAAGGGGCTGCATGCATGA

Synonyms

Publications