jgi.p|Nanoce1779_2|625947, mRNA_6539 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|625947
Unique NamemRNA_6539
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1296
Alignment locationscaffold_18:114748..116285 -

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Properties
Property NameValue
TranscriptId626033
TrackFilteredModels2
ProteinId625947
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:114748..116285 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|625947gene_6539Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|625947mRNA_6539-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6539CDS_6539Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6539 ID=mRNA_6539|Name=jgi.p|Nanoce1779_2|625947|organism=Nannochloropsis oceanica|type=mRNA|length=1296bp
ATGAGCGGCAAGGAGAAGCTTCAAGGTCAACGCGCTTTGTGGCGGTGCTT
GCCTGCCCACAATTCCATTACCTTGACGGGTCGTGATGGCAACCCCCTCC
CGGACCGCAACCCGGGCTTCGGCTTCTTCACATACGATAAGGTATTTTCC
GAGAACGCCAGCACCAGCGACGTGTATCAGGCTATTGGCCGCCCAATCGT
GTCGTCGGTCGTGCAGGGATTTAATGGCACCATATTTGCGTACGGGCAGA
CGTCCTCCGGCAAGACCTACACGATGGTAGGGGACGAGGTCGCGGGGGAG
GAGGGGGTGTTGCATCTGGCGGCCCGAGATGTGTTTCGACTGATTTCGGA
GACGCAAGATCGTGACTTTTTGCTGCGCGTATCATTTGTGGAGATTTATA
ATGAGAATATTCGTGACTTGCTCGATCCGGAGATGCCTACTCTGCACATT
CGGGAGGACCCACGAAAGGGGGTTTATATAGAGGCACATGAGAGTATCAT
CACTGATTTTGATTCGATCCTAACGGCGCTCAAGACGGGCTCGAAGCATC
GCCGGGTGGAGGCGACAGCGATGAATGAGCGTTCCTCTCGCTCGCATACG
ATCTTCAAAATGATTGTCGAGAGCAAGGAACGTCCTACGGGCGTGTCTAG
CACTGCTGTACCGGAAACAGCAGCAGCAGCAGCGCCGATGCCGGCGGCAG
ATGGTGACGTGGACGGGGCTGTGCTGGTTGCGACTCTGAATTTAGTGGAT
CTAGCGGGCTCGGAGAGCGTGCGACACACAGGTGCGACGGGGAATCGGGC
GAAGGAGGGAGGGAAGATCAATCAAAGTTTGCTTACGCTTAGTAGGGTGA
TTCATGCCCTGGGCCAAGATGGAAATACGCATAAGGGTTTTCGGGACTCA
AAATTGACGCGAATTTTGCAGCCAAGCTTGTCTGGTAATGCTAAGATGGC
GGTGGTGTGTTGCATCACGGCGGCGGAAAAATACCTCGAGGAAACGAGGA
GTACCCTTCAGTTTGCGTCGCGGGCGAAGATGGTCAGGACGTGTGCGGTG
GTAAATGAGGTATTGGATGATAGGGCACAGCTAAAGAGGTGGGGTGGGGG
TTGTGGGGTCGTCTGATGCTGCGGGTGGGAAGGCACGTAGGTTTAAACGG
ACGCGTGAGACTTGGTGTCCTGGTGAGTCGGGGGTACCTCTTCCTCCCGG
CGCTCTGGCGAAGAGTCTACAAGAGCTGGTGGTAGAGGGGGGTGGGGGAG
TGGATGATAGTTTTATTTCAAAGCTGGCTGCAGTCGAAGGGGTTGG
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protein sequence of jgi.p|Nanoce1779_2|625947

>mRNA_6539-protein ID=mRNA_6539-protein|Name=jgi.p|Nanoce1779_2|625947|organism=Nannochloropsis oceanica|type=polypeptide|length=372bp
MSGKEKLQGQRALWRCLPAHNSITLTGRDGNPLPDRNPGFGFFTYDKVFS
ENASTSDVYQAIGRPIVSSVVQGFNGTIFAYGQTSSGKTYTMVGDEVAGE
EGVLHLAARDVFRLISETQDRDFLLRVSFVEIYNENIRDLLDPEMPTLHI
REDPRKGVYIEAHESIITDFDSILTALKTGSKHRRVEATAMNERSSRSHT
IFKMIVESKERPTGVSSTAVPETAAAAAPMPAADGDVDGAVLVATLNLVD
LAGSESVRHTGATGNRAKEGGKINQSLLTLSRVIHALGQDGNTHKGFRDS
KLTRILQPSLSGNAKMAVVCCITAAEKYLEETRSTLQFASRAKMVRTCAV
VNEVLDDRAQLKRWGGGCGVV*
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mRNA from alignment at scaffold_18:114748..116285-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6539 ID=mRNA_6539|Name=jgi.p|Nanoce1779_2|625947|organism=Nannochloropsis oceanica|type=mRNA|length=1538bp|location=Sequence derived from alignment at scaffold_18:114748..116285- (Nannochloropsis oceanica)
ATGAGCGGCAAGGAGAAGCTTCAAGGTCAACGCGCTTTGTGGCGGTGCTT
GCCTGCCCACAATTCCATTACCTTGACGGGTCGTGATGGCAACCCCCTCC
CGGACCGCAACCCGGGCTTCGGCTTCTTCACATACGATAAGGTATTTTCC
GAGAACGCCAGCACCAGCGACGTGTATCAGGCTATTGGCCGCCCAATCGT
GTCGTCGGTCGTGCAGGGATTTAATGGCACCATATTTGCGTACGGGCAGA
CGTCCTCCGGCAAGACCTACACGATGGTAGGGGACGAGGTCGCGGGGGAG
GAGGGGGTGTTGCATCTGGCGGCCCGAGATGTGTTTCGACTGATTTCGGA
GACGCAAGATCGTGACTTTTTGCTGCGCGTATCATTTGTGGAGATTTATA
ATGAGAATATTCGTGACTTGCTCGATCCGGAGATGCCTACTCTGCACATT
CGGGAGGACCCACGAAAGGGGGTTTATATAGAGGCACATGAGAGTATCAT
CACTGATTTTGATTCGATCCTAACGGCGCTCAAGACGGGCTCGAAGCATC
GCCGGGTGGAGGCGACAGCGATGAATGAGCGTTCCTCTCGCTCGCATACG
ATCTTCAAAATGATTGTCGAGAGCAAGGAACGTCCTACGGGCGTGTCTAG
CACTGCTGTACCGGAAACAGCAGCAGCAGCAGCGCCGATGCCGGCGGCAG
ATGGTGACGTGGACGGGGCTGTGCTGGTTGCGACTCTGAATTTAGTGGAT
CTAGCGGGCTCGGAGAGCGTGCGACACACAGGTGCGACGGGGAATCGGGC
GAAGGAGGGAGGGAAGATCAATCAAAGTTTGCTTACGCTTAGTAGGGTGA
TTCATGCCCTGGGCCAAGATGGAAATACGCATAAGGGTTTTCGGGACTCA
AAATTGACGCGAATTTTGCAGCCAAGCTTGTCTGGTAATGCTAAGATGGC
GGTGGTGTGTTGCATCACGGCGGCGGAAAAATACCTCGAGGAAACGAGGA
GTACCCTTCAGTTTGCGTCGCGGGCGAAGATGGTCAGGACGTGTGCGGTG
GTAAATGAGGTATTGGATGATAGGGCACAGCTAAAGAGGTTAAAGAAGGA
GCTGCAAGATCTAAAGGGGCGACAGAAACAATTGGAAGAGATAGAGGCAA
TGGGTGTTGGGGGGGGAGGAGAGGAGGGAGGAGGGGGAGAGGGAGGGGGC
TTGAAGAAAGAGGAAATGGTTCGGTTGGAAGTGGAAAAACAAATGATGAC
GGGAAAGGTGGAGGAGTTAGAAGCGGTGAGGAAAGAGCAGGCTATTAAAA
TTTCCCGGTTGAAGACATTGATTCTGCAAGGTGGGGTGGGGGTTGTGGGG
TCGTCTGATGCTGCGGGTGGGAAGGCACGTAGGTTTAAACGGACGCGTGA
GACTTGGTGTCCTGGTGAGTCGGGGGTACCTCTTCCTCCCGGCGCTCTGG
CGAAGAGTCTACAAGAGCTGGTGGTAGAGGGGGGTGGGGGAGTGGATGAT
AGTTTTATTTCAAAGCTGGCTGCAGTCGAAGGGGTTGG
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Coding sequence (CDS) from alignment at scaffold_18:114748..116285-

>mRNA_6539 ID=mRNA_6539|Name=jgi.p|Nanoce1779_2|625947|organism=Nannochloropsis oceanica|type=CDS|length=2232bp|location=Sequence derived from alignment at scaffold_18:114748..116285- (Nannochloropsis oceanica)
GTGGGGTGGGGGTTGTGGGGTCGTCTGAATGAGCGGCAAGGAGAAGCTTC
AAGGTCAACGCGCTTTGTGGCGGTGCTTGCCTGCCCACAATTCCATTACC
TTGACGGGTCGTGATGGCAACCCCCTCCCGGACCGCAACCCGGGCTTCGG
CTTCTTCACATACGATAAGGTATTTTCCGAGAACGCCAGCACCAGCGACG
TGTATCAGGCTATTGGCCGCCCAATCGTGTCGTCGGTCGTGCAGGGATTT
AATGGCACCATATTTGCGTACGGGCAGACGTCCTCCGGCAAGACCTACAC
GATGGTAGGGGACGAGGTCGCGGGGGAGGAGGGGGTGTTGCATCTGGCGG
CCCGAGATGTGTTTCGACTGATTTCGGAGACGCAAGATCGTGACTTTTTG
CTGCGCGTATCATTTGTGGAGATTTATAATGAGAATATTCGTGACTTGCT
CGATCCGGAGATGCCTACTCTGCACATTCGGGAGGACCCACGAAAGGGGG
TTTATATAGAGGCACATGAGAGTATCATCACTGATTTTGATTCGATCCTA
ACGGCGCTCAAGACGGGCTCGAAGCATCGCCGGGTGGAGGCGACAGCGAT
GAATGAGCGTTCCTCTCGCTCGCATACGATCTTCAAAATGATTGTCGAGA
GCAAGGAACGTCCTACGGGCGTGTCTAGCACTGCTGTACCGGAAACAGCA
GCAGCAGCAGCGCCGATGCCGGCGGCAGATGGTGACGTGGACGGGGCTGT
GCTGGTTGCGACTCTGAATTTAGTGGATCTAGCGGGCTCGGAGAGCGTGC
GACACACAGGTGCGACGGGGAATCGGGCGAAGGAGGGAGGGAAGATCAAT
CAAAGTTTGCTTACGCTTAGTAGGGTGATTCATGCCCTGGGCCAAGATGG
AAATACGCATAAGGGTTTTCGGGACTCAAAATTGACGCGAATTTTGCAGC
CAAGCTTGTCTGGTAATGCTAAGATGGCGGTGGTGTGTTGCATCACGGCG
GCGGAAAAATACCTCGAGGAAACGAGGAGTACCCTTCAGTTTGCGTCGCG
GGCGAAGATGGTCAGGACGTGTGCGGTGGTAAATGAGGTATTGGATGATA
GGGCACAGCTAAAGAGGTGGGGTGGGGGTTGTGGGGTCGTCTGAATGAGC
GGCAAGGAGAAGCTTCAAGGTCAACGCGCTTTGTGGCGGTGCTTGCCTGC
CCACAATTCCATTACCTTGACGGGTCGTGATGGCAACCCCCTCCCGGACC
GCAACCCGGGCTTCGGCTTCTTCACATACGATAAGGTATTTTCCGAGAAC
GCCAGCACCAGCGACGTGTATCAGGCTATTGGCCGCCCAATCGTGTCGTC
GGTCGTGCAGGGATTTAATGGCACCATATTTGCGTACGGGCAGACGTCCT
CCGGCAAGACCTACACGATGGTAGGGGACGAGGTCGCGGGGGAGGAGGGG
GTGTTGCATCTGGCGGCCCGAGATGTGTTTCGACTGATTTCGGAGACGCA
AGATCGTGACTTTTTGCTGCGCGTATCATTTGTGGAGATTTATAATGAGA
ATATTCGTGACTTGCTCGATCCGGAGATGCCTACTCTGCACATTCGGGAG
GACCCACGAAAGGGGGTTTATATAGAGGCACATGAGAGTATCATCACTGA
TTTTGATTCGATCCTAACGGCGCTCAAGACGGGCTCGAAGCATCGCCGGG
TGGAGGCGACAGCGATGAATGAGCGTTCCTCTCGCTCGCATACGATCTTC
AAAATGATTGTCGAGAGCAAGGAACGTCCTACGGGCGTGTCTAGCACTGC
TGTACCGGAAACAGCAGCAGCAGCAGCGCCGATGCCGGCGGCAGATGGTG
ACGTGGACGGGGCTGTGCTGGTTGCGACTCTGAATTTAGTGGATCTAGCG
GGCTCGGAGAGCGTGCGACACACAGGTGCGACGGGGAATCGGGCGAAGGA
GGGAGGGAAGATCAATCAAAGTTTGCTTACGCTTAGTAGGGTGATTCATG
CCCTGGGCCAAGATGGAAATACGCATAAGGGTTTTCGGGACTCAAAATTG
ACGCGAATTTTGCAGCCAAGCTTGTCTGGTAATGCTAAGATGGCGGTGGT
GTGTTGCATCACGGCGGCGGAAAAATACCTCGAGGAAACGAGGAGTACCC
TTCAGTTTGCGTCGCGGGCGAAGATGGTCAGGACGTGTGCGGTGGTAAAT
GAGGTATTGGATGATAGGGCACAGCTAAAGAG
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Synonyms
Publications