jgi.p|Nanoce1779_2|597281, mRNA_6537 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597281
Unique NamemRNA_6537
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length3200
Alignment locationscaffold_18:108687..111886 -

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Properties
Property NameValue
TranscriptId597367
TrackFilteredModels2
ProteinId597281
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:108687..111886 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597281gene_6537Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597281mRNA_6537-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6537CDS_6537Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6537 ID=mRNA_6537|Name=jgi.p|Nanoce1779_2|597281|organism=Nannochloropsis oceanica|type=mRNA|length=3200bp
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAAGAAGAAGAAAAGCAGGAGG
CCAAAGGGCTCACAGTTGAGGCAGCGGATCAAGGAAACGAGAGCATCAAC
AAGCTGCAGGCGCAGCTTGTGAACGAGAAGAATGGGCGTGCCGAAGCGGA
GAGTGCGTTGGCGTTGGTGACTACGGATCTGACCCAAGCCCGGATAGATA
CGCGGCAGGCCGAGGAGAAGGTGGACGAGAGCCGTCGAGCAATGGAGGAG
GCGAAGGAGGCCGCTCGAAAGGAGCACGAGCGTGTGGATAATGAGTTGGC
CATGCGTGAGGCGGAGATTGCATCATTGAAAGAGCAGTTGCTTGTGCTTT
CGCGTGAAATGAAGGTGACTCAGGAGAGTCTATATCAGAATGAGACGGCT
GCGCAGGGGAACGAGCTTACGGACGTATCGCTCCGCAAGAAGTTGTCGCA
AGTCCAGACACAATTAGATTTGGCTCAGTCATTGGTCGACAAACATGAGG
CCCGCATCAAGGAGCTTGAGACGGAGAACAATCGCGTGATTCGCGTGGCC
GAGGATGATGTCAAGAAAATCCGAGCTGAGCTGGAGCAAGCAACCAGAAG
CCAGGTGCAGGCTTCAGCCGAGGGGGCGGAGATGCAGCGGTTGCAGGAAG
CGCACCAGGCCTTAACTAAGAAGGTGGCAACGCTCAAGGCAGAGAAGGAA
GAGGCGAAAGGCCGTGCGAAGGTGGCAGTGGACGTTGCTGATGGTTTGGA
GAAGGAAGTAGAGGAGTTGCGCATGCTGGTTGGTAATGGACAGAAACAAG
GCAATCCTGCATCTGAAATGGAGGATCTTCGAGGAGAGCTGGAGGTTGCC
CGGGCACGTGAAAACGAAGTGAGGCAGGAGGCGCACCAGCAGCAGGTGCG
GCAGAAGCGTCTACAGAAAGAGGTGGAGGCTTTGCGGGAGGAATGCAGCA
GGGCCCGTGACGAGCTGGAGGGAGTGAAGGCCGAGCTAGCTGCTGCGCTT
GCAGCAATCGCGGTGGCTGAGAGTCAGGACAAGGGGGAGGAAGCATTGAC
AACAGCGATGGCTGAGGTGGAGACGCTGCGTGCTCAGCTGGTGGTGATGA
ATGAGGGGGAGGCCGCACGTGTGGCGGAACTCCAGGAGGCCTTGACCCTG
ATGAAGGCGCGAGCGCAAGAAATGGAGGGGGGGCTGCAGCGGGAAGAGGC
ACGGTTGAAGATTTTGGAGGGAGAGGTTGAAGAAGCTAATACGAAGGCAG
AGAAGGCGGAAGGCAGCCGATCAGAGCTGCTCAAGGAATTAAATGCTTTG
TTCGAGGCAAAGTTTGAGGCCGAATCACGGGTGGCGGTGTTGGAGGACGA
GATGGACAAGTTGAAAAAGCAGGTGGTGGAGTGCGAGACGGGGGTGAGCC
ATGGGGCGGAAGAGGCGGCGGAGGTGGAGGCGATGCGGACGGCATTGGCG
CACAAGGAAGCTGAGGGATACCGTACCAAACGAGAGCTGGCTGAATTGAA
GGAGGCGGCGGAGGCAGCGGAGGAGGCGATGGGGGCACAGCAGGCAGAGG
TGGCTCGGTTGCAGGCCGAGAGCAGGGCGAAGGACGAGAGAATTAAGAAG
CTGGATGCTGTAAAATTGACGACAGATCAGGTGGAAAAATTGAGGAAGAT
CAAGGCGGAACACGCGCAATTCAGTGCGGCTAACAAGACGTTGCGGCAGG
AATTAGAGGCCCTCCGGCAACAGCAGCAGGCAAAGGCGGCCGCCTCGAGC
AGCAGTGCCACGCAAGCTCTAGAGGCGCAGTCACAGACGATTGCAGAGTT
GATGGTCGCTCGTGATGGTCTCCGGGAGAAGTTGCAGGCAAGCATGGCCG
CATGCCGTAAGCTGGAGCTGGAGCGGTTGAGCGTGAGGGAGGCTTTGCAG
GAGTTGCCACCTTTTGAGGATGGAGGAAGGGAGGGGCTAGGTTTCGAGGG
GGACGTACCAGAGGATTTGGGGGTGGCTGTGGGCGTGCTGTTGGAGAAAA
TGCGAACGAAATTTTGTGAGAGTGATGGGGCGAGTAGGGATAGGGCAATG
TTGCTCAGGGAGGTGGAGACGCTGGGAGAGGAGAAGGAAGAATTGAAGGC
GAGATTGGAAGATTTAGAGGTGGGGGTGGGTGGAGCTCAGGAGGTGGAGG
GGAAATTGAGGGAGAAGTATGATGGGGCATGTCTGAAGATTAAGGGCTTG
GAAGAGGAGATGGAGAAGGTGATGTGTCAGATGAGGGAGGGGGCGATGGA
TAGGCAAGTGGCGGCGGAGGAGGCCGCGAGGAATATTCGGTTTTTAGAAA
AGGAAAATTTGGAGCTGATGATGGAGATTAAGAAGTTGCAAGAACAGGCG
TGTAGGCTGCAGGCTGAGTTGGATGGTGGTGGCACCGTTGGAGGAGGAGG
AGGAGGAGGAGGGGCTTTGAAGCCTATTCAAGGGCAGCATCCAAATATAA
CTTCTTCGACATCATCGTCGTCGCCGTCGGTGAAAGAGATGATGGGTACG
AGCAAGGTAGGCAAGTCCACATCCTCATATTCCTCCATTCCTATGTCGAG
TACGACGATGCCAGCAGGCGTGGCGGGAGGAGGCAAGGAGAATGTTATGC
ACGCCGCGGTGGGAAGAGTGGGAGAGAACATGCTGCGAGCAAAAGAGGAT
GAGACGGCGCCGCCTTTCCGGTCAATGGATGACGATGAAACCTTGGCGGC
GGCTAACCAGCAGTGCAAACAATCATAAAGTCGAGATGGGGCAAGAGAAG
GAGGAAAGGTGAGGAATAATAGCCGAAAACAGGACAAGAGACAAAAAAGA
CAGGGAGAAGCCAACAGCAGAGAGAAGAGGATGAGGGGAAAACAAAAGAG
TTTTGAGCGAGAGGGAGTGTGGTCATGTCTTGCAGTCCATTAGAACCCTA
GCTAAGAATATTTAGGGAGAGAAATACAGACAGAAGAAATCAAGGATACA
TTAGTAATCAAGCAAGCGCATAAATTACAAAAATGGAAGGGAACCAAAGG
AGGAAAGAAAAGATGATAACAACCGGGTACCACAGGATCATCAATAGAGG
ACGTAAAATCAGAGATCGAGGTTAAAAAGAAAACGAATATTCTAGTCATA
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protein sequence of jgi.p|Nanoce1779_2|597281

>mRNA_6537-protein ID=mRNA_6537-protein|Name=jgi.p|Nanoce1779_2|597281|organism=Nannochloropsis oceanica|type=polypeptide|length=829bp
MEEAKEAARKEHERVDNELAMREAEIASLKEQLLVLSREMKVTQESLYQN
ETAAQGNELTDVSLRKKLSQVQTQLDLAQSLVDKHEARIKELETENNRVI
RVAEDDVKKIRAELEQATRSQVQASAEGAEMQRLQEAHQALTKKVATLKA
EKEEAKGRAKVAVDVADGLEKEVEELRMLVGNGQKQGNPASEMEDLRGEL
EVARARENEVRQEAHQQQVRQKRLQKEVEALREECSRARDELEGVKAELA
AALAAIAVAESQDKGEEALTTAMAEVETLRAQLVVMNEGEAARVAELQEA
LTLMKARAQEMEGGLQREEARLKILEGEVEEANTKAEKAEGSRSELLKEL
NALFEAKFEAESRVAVLEDEMDKLKKQVVECETGVSHGAEEAAEVEAMRT
ALAHKEAEGYRTKRELAELKEAAEAAEEAMGAQQAEVARLQAESRAKDER
IKKLDAVKLTTDQVEKLRKIKAEHAQFSAANKTLRQELEALRQQQQAKAA
ASSSSATQALEAQSQTIAELMVARDGLREKLQASMAACRKLELERLSVRE
ALQELPPFEDGGREGLGFEGDVPEDLGVAVGVLLEKMRTKFCESDGASRD
RAMLLREVETLGEEKEELKARLEDLEVGVGGAQEVEGKLREKYDGACLKI
KGLEEEMEKVMCQMREGAMDRQVAAEEAARNIRFLEKENLELMMEIKKLQ
EQACRLQAELDGGGTVGGGGGGGGALKPIQGQHPNITSSTSSSSPSVKEM
MGTSKVGKSTSSYSSIPMSSTTMPAGVAGGGKENVMHAAVGRVGENMLRA
KEDETAPPFRSMDDDETLAAANQQCKQS*
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mRNA from alignment at scaffold_18:108687..111886-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6537 ID=mRNA_6537|Name=jgi.p|Nanoce1779_2|597281|organism=Nannochloropsis oceanica|type=mRNA|length=3200bp|location=Sequence derived from alignment at scaffold_18:108687..111886- (Nannochloropsis oceanica)
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA ACAACAACAACAACAACAACAACAACAACAAGAAGAAGAAAAGCAGGAGG CCAAAGGGCTCACAGTTGAGGCAGCGGATCAAGGAAACGAGAGCATCAAC AAGCTGCAGGCGCAGCTTGTGAACGAGAAGAATGGGCGTGCCGAAGCGGA GAGTGCGTTGGCGTTGGTGACTACGGATCTGACCCAAGCCCGGATAGATA CGCGGCAGGCCGAGGAGAAGGTGGACGAGAGCCGTCGAGCAATGGAGGAG GCGAAGGAGGCCGCTCGAAAGGAGCACGAGCGTGTGGATAATGAGTTGGC CATGCGTGAGGCGGAGATTGCATCATTGAAAGAGCAGTTGCTTGTGCTTT CGCGTGAAATGAAGGTGACTCAGGAGAGTCTATATCAGAATGAGACGGCT GCGCAGGGGAACGAGCTTACGGACGTATCGCTCCGCAAGAAGTTGTCGCA AGTCCAGACACAATTAGATTTGGCTCAGTCATTGGTCGACAAACATGAGG CCCGCATCAAGGAGCTTGAGACGGAGAACAATCGCGTGATTCGCGTGGCC GAGGATGATGTCAAGAAAATCCGAGCTGAGCTGGAGCAAGCAACCAGAAG CCAGGTGCAGGCTTCAGCCGAGGGGGCGGAGATGCAGCGGTTGCAGGAAG CGCACCAGGCCTTAACTAAGAAGGTGGCAACGCTCAAGGCAGAGAAGGAA GAGGCGAAAGGCCGTGCGAAGGTGGCAGTGGACGTTGCTGATGGTTTGGA GAAGGAAGTAGAGGAGTTGCGCATGCTGGTTGGTAATGGACAGAAACAAG GCAATCCTGCATCTGAAATGGAGGATCTTCGAGGAGAGCTGGAGGTTGCC CGGGCACGTGAAAACGAAGTGAGGCAGGAGGCGCACCAGCAGCAGGTGCG GCAGAAGCGTCTACAGAAAGAGGTGGAGGCTTTGCGGGAGGAATGCAGCA GGGCCCGTGACGAGCTGGAGGGAGTGAAGGCCGAGCTAGCTGCTGCGCTT GCAGCAATCGCGGTGGCTGAGAGTCAGGACAAGGGGGAGGAAGCATTGAC AACAGCGATGGCTGAGGTGGAGACGCTGCGTGCTCAGCTGGTGGTGATGA ATGAGGGGGAGGCCGCACGTGTGGCGGAACTCCAGGAGGCCTTGACCCTG ATGAAGGCGCGAGCGCAAGAAATGGAGGGGGGGCTGCAGCGGGAAGAGGC ACGGTTGAAGATTTTGGAGGGAGAGGTTGAAGAAGCTAATACGAAGGCAG AGAAGGCGGAAGGCAGCCGATCAGAGCTGCTCAAGGAATTAAATGCTTTG TTCGAGGCAAAGTTTGAGGCCGAATCACGGGTGGCGGTGTTGGAGGACGA GATGGACAAGTTGAAAAAGCAGGTGGTGGAGTGCGAGACGGGGGTGAGCC ATGGGGCGGAAGAGGCGGCGGAGGTGGAGGCGATGCGGACGGCATTGGCG CACAAGGAAGCTGAGGGATACCGTACCAAACGAGAGCTGGCTGAATTGAA GGAGGCGGCGGAGGCAGCGGAGGAGGCGATGGGGGCACAGCAGGCAGAGG TGGCTCGGTTGCAGGCCGAGAGCAGGGCGAAGGACGAGAGAATTAAGAAG CTGGATGCTGTAAAATTGACGACAGATCAGGTGGAAAAATTGAGGAAGAT CAAGGCGGAACACGCGCAATTCAGTGCGGCTAACAAGACGTTGCGGCAGG AATTAGAGGCCCTCCGGCAACAGCAGCAGGCAAAGGCGGCCGCCTCGAGC AGCAGTGCCACGCAAGCTCTAGAGGCGCAGTCACAGACGATTGCAGAGTT GATGGTCGCTCGTGATGGTCTCCGGGAGAAGTTGCAGGCAAGCATGGCCG CATGCCGTAAGCTGGAGCTGGAGCGGTTGAGCGTGAGGGAGGCTTTGCAG GAGTTGCCACCTTTTGAGGATGGAGGAAGGGAGGGGCTAGGTTTCGAGGG GGACGTACCAGAGGATTTGGGGGTGGCTGTGGGCGTGCTGTTGGAGAAAA TGCGAACGAAATTTTGTGAGAGTGATGGGGCGAGTAGGGATAGGGCAATG TTGCTCAGGGAGGTGGAGACGCTGGGAGAGGAGAAGGAAGAATTGAAGGC GAGATTGGAAGATTTAGAGGTGGGGGTGGGTGGAGCTCAGGAGGTGGAGG GGAAATTGAGGGAGAAGTATGATGGGGCATGTCTGAAGATTAAGGGCTTG GAAGAGGAGATGGAGAAGGTGATGTGTCAGATGAGGGAGGGGGCGATGGA TAGGCAAGTGGCGGCGGAGGAGGCCGCGAGGAATATTCGGTTTTTAGAAA AGGAAAATTTGGAGCTGATGATGGAGATTAAGAAGTTGCAAGAACAGGCG TGTAGGCTGCAGGCTGAGTTGGATGGTGGTGGCACCGTTGGAGGAGGAGG AGGAGGAGGAGGGGCTTTGAAGCCTATTCAAGGGCAGCATCCAAATATAA CTTCTTCGACATCATCGTCGTCGCCGTCGGTGAAAGAGATGATGGGTACG AGCAAGGTAGGCAAGTCCACATCCTCATATTCCTCCATTCCTATGTCGAG TACGACGATGCCAGCAGGCGTGGCGGGAGGAGGCAAGGAGAATGTTATGC ACGCCGCGGTGGGAAGAGTGGGAGAGAACATGCTGCGAGCAAAAGAGGAT GAGACGGCGCCGCCTTTCCGGTCAATGGATGACGATGAAACCTTGGCGGC GGCTAACCAGCAGTGCAAACAATCATAAAGTCGAGATGGGGCAAGAGAAG GAGGAAAGGTGAGGAATAATAGCCGAAAACAGGACAAGAGACAAAAAAGA CAGGGAGAAGCCAACAGCAGAGAGAAGAGGATGAGGGGAAAACAAAAGAG TTTTGAGCGAGAGGGAGTGTGGTCATGTCTTGCAGTCCATTAGAACCCTA GCTAAGAATATTTAGGGAGAGAAATACAGACAGAAGAAATCAAGGATACA TTAGTAATCAAGCAAGCGCATAAATTACAAAAATGGAAGGGAACCAAAGG AGGAAAGAAAAGATGATAACAACCGGGTACCACAGGATCATCAATAGAGG ACGTAAAATCAGAGATCGAGGTTAAAAAGAAAACGAATATTCTAGTCATA
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Coding sequence (CDS) from alignment at scaffold_18:108687..111886-

>mRNA_6537 ID=mRNA_6537|Name=jgi.p|Nanoce1779_2|597281|organism=Nannochloropsis oceanica|type=CDS|length=2487bp|location=Sequence derived from alignment at scaffold_18:108687..111886- (Nannochloropsis oceanica)
ATGGAGGAGGCGAAGGAGGCCGCTCGAAAGGAGCACGAGCGTGTGGATAA
TGAGTTGGCCATGCGTGAGGCGGAGATTGCATCATTGAAAGAGCAGTTGC
TTGTGCTTTCGCGTGAAATGAAGGTGACTCAGGAGAGTCTATATCAGAAT
GAGACGGCTGCGCAGGGGAACGAGCTTACGGACGTATCGCTCCGCAAGAA
GTTGTCGCAAGTCCAGACACAATTAGATTTGGCTCAGTCATTGGTCGACA
AACATGAGGCCCGCATCAAGGAGCTTGAGACGGAGAACAATCGCGTGATT
CGCGTGGCCGAGGATGATGTCAAGAAAATCCGAGCTGAGCTGGAGCAAGC
AACCAGAAGCCAGGTGCAGGCTTCAGCCGAGGGGGCGGAGATGCAGCGGT
TGCAGGAAGCGCACCAGGCCTTAACTAAGAAGGTGGCAACGCTCAAGGCA
GAGAAGGAAGAGGCGAAAGGCCGTGCGAAGGTGGCAGTGGACGTTGCTGA
TGGTTTGGAGAAGGAAGTAGAGGAGTTGCGCATGCTGGTTGGTAATGGAC
AGAAACAAGGCAATCCTGCATCTGAAATGGAGGATCTTCGAGGAGAGCTG
GAGGTTGCCCGGGCACGTGAAAACGAAGTGAGGCAGGAGGCGCACCAGCA
GCAGGTGCGGCAGAAGCGTCTACAGAAAGAGGTGGAGGCTTTGCGGGAGG
AATGCAGCAGGGCCCGTGACGAGCTGGAGGGAGTGAAGGCCGAGCTAGCT
GCTGCGCTTGCAGCAATCGCGGTGGCTGAGAGTCAGGACAAGGGGGAGGA
AGCATTGACAACAGCGATGGCTGAGGTGGAGACGCTGCGTGCTCAGCTGG
TGGTGATGAATGAGGGGGAGGCCGCACGTGTGGCGGAACTCCAGGAGGCC
TTGACCCTGATGAAGGCGCGAGCGCAAGAAATGGAGGGGGGGCTGCAGCG
GGAAGAGGCACGGTTGAAGATTTTGGAGGGAGAGGTTGAAGAAGCTAATA
CGAAGGCAGAGAAGGCGGAAGGCAGCCGATCAGAGCTGCTCAAGGAATTA
AATGCTTTGTTCGAGGCAAAGTTTGAGGCCGAATCACGGGTGGCGGTGTT
GGAGGACGAGATGGACAAGTTGAAAAAGCAGGTGGTGGAGTGCGAGACGG
GGGTGAGCCATGGGGCGGAAGAGGCGGCGGAGGTGGAGGCGATGCGGACG
GCATTGGCGCACAAGGAAGCTGAGGGATACCGTACCAAACGAGAGCTGGC
TGAATTGAAGGAGGCGGCGGAGGCAGCGGAGGAGGCGATGGGGGCACAGC
AGGCAGAGGTGGCTCGGTTGCAGGCCGAGAGCAGGGCGAAGGACGAGAGA
ATTAAGAAGCTGGATGCTGTAAAATTGACGACAGATCAGGTGGAAAAATT
GAGGAAGATCAAGGCGGAACACGCGCAATTCAGTGCGGCTAACAAGACGT
TGCGGCAGGAATTAGAGGCCCTCCGGCAACAGCAGCAGGCAAAGGCGGCC
GCCTCGAGCAGCAGTGCCACGCAAGCTCTAGAGGCGCAGTCACAGACGAT
TGCAGAGTTGATGGTCGCTCGTGATGGTCTCCGGGAGAAGTTGCAGGCAA
GCATGGCCGCATGCCGTAAGCTGGAGCTGGAGCGGTTGAGCGTGAGGGAG
GCTTTGCAGGAGTTGCCACCTTTTGAGGATGGAGGAAGGGAGGGGCTAGG
TTTCGAGGGGGACGTACCAGAGGATTTGGGGGTGGCTGTGGGCGTGCTGT
TGGAGAAAATGCGAACGAAATTTTGTGAGAGTGATGGGGCGAGTAGGGAT
AGGGCAATGTTGCTCAGGGAGGTGGAGACGCTGGGAGAGGAGAAGGAAGA
ATTGAAGGCGAGATTGGAAGATTTAGAGGTGGGGGTGGGTGGAGCTCAGG
AGGTGGAGGGGAAATTGAGGGAGAAGTATGATGGGGCATGTCTGAAGATT
AAGGGCTTGGAAGAGGAGATGGAGAAGGTGATGTGTCAGATGAGGGAGGG
GGCGATGGATAGGCAAGTGGCGGCGGAGGAGGCCGCGAGGAATATTCGGT
TTTTAGAAAAGGAAAATTTGGAGCTGATGATGGAGATTAAGAAGTTGCAA
GAACAGGCGTGTAGGCTGCAGGCTGAGTTGGATGGTGGTGGCACCGTTGG
AGGAGGAGGAGGAGGAGGAGGGGCTTTGAAGCCTATTCAAGGGCAGCATC
CAAATATAACTTCTTCGACATCATCGTCGTCGCCGTCGGTGAAAGAGATG
ATGGGTACGAGCAAGGTAGGCAAGTCCACATCCTCATATTCCTCCATTCC
TATGTCGAGTACGACGATGCCAGCAGGCGTGGCGGGAGGAGGCAAGGAGA
ATGTTATGCACGCCGCGGTGGGAAGAGTGGGAGAGAACATGCTGCGAGCA
AAAGAGGATGAGACGGCGCCGCCTTTCCGGTCAATGGATGACGATGAAAC
CTTGGCGGCGGCTAACCAGCAGTGCAAACAATCATAA
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Synonyms
Publications