jgi.p|Nanoce1779_2|597280, mRNA_6536 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|597280
Unique Name	mRNA_6536
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1976
Alignment location	scaffold_18:106722..108697 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	597366
Track	FilteredModels2
ProteinId	597280

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:106722..108697 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597280	gene_6536	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597280	mRNA_6536-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6536	CDS_6536	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:106722..108697+
coding sequence from alignment at scaffold_18:106722..108697+

mRNA sequence

>mRNA_6536 ID=mRNA_6536|Name=jgi.p|Nanoce1779_2|597280|organism=Nannochloropsis oceanica|type=mRNA|length=1976bp
ACAGGAAGGCGTCATGGTTGAGCCCTACCTGCACCGTCACTACGCTCCGC
CCTCGTCCGCCTCCTCGGCGGTCGCCCACACCCGCCGGCCCCGTTCTTCT
TCCTCCTTCTATGGCCGGGCCGCCGCCCGACTGCCTCACCTGCGCATGGA
TGCGACTCTGTTCCTGCTCATTGTATGCTTCACAATGGGCGTCTACCTTC
CCGGCTTGGTCGGAATGTCCCCGCGGATTGATTCGGTCGGCGGTGGGAGC
GGTGCTCTTTTCAGCCGCAGCAGCAACAACAAAGGGGTGGACTTGCACGC
TCTGCAAGCGCACGTTCAAAACCTGATGATGCGCATCACCGAGGCCGAAG
CCGAGACCGCTCTCATGTCTGAAGAGAATCAAAAGCTGCGCTTGGATAAC
AAGGTAGAACAGTCCTACCTTAAAACCATGACGAAGGCCAAGAACGATGA
AATCCGCGTGCTCAAGGCCCGGATAAAAGAGGTAGAGGGCAAGATGTCTG
CTTGTGAGCAGCAACAAGATGAAGGTACCGACAAGGAAGAGCTACGCAAG
GCAGAACTGCGGACAGAATCGCTTGAAAAGGAACTGAAGGGTCTCCACAC
GCAGCTGGAGCTTGCAATGAAGGAAAATTCGCATCAAGAGCCCGTGATGA
AGGCAAGTGTCCCACCGCCGCGAGCAGTTCAAGAGGAGCAGCAGCAGGAG
CGGCAGCAGAGACGGCAAATGCAAAAATCCAATAGTATTAAACCCCTGAT
AACATACAGGACCGTCTCCGTCCCCGAGCCCCAACCACTAAATTCTTATT
GGGAAACACGTCTACGGAAGCTCTTTTCCCTTGCCCAGACCGACCCCGTA
TCCCTCCTCTCCAAGCTTGACGACCCCCAAAATGACCCCTTAGACGTCAA
ATTTGCAAGCCCTGAAAATTTTACCTGTCCTCCTCCCGAACAACGCCTCA
CGCAACCCGATCTAAGACGGATGGAGATGGCAGCTCAATTTCGTGATGGG
CAGGGGTTTATTTTTTTCCAGCATTTGCGAAAGGCGGGCGGGACGGGTTT
CTGCGATTTGGCCACCAGGAACATGCCTAAGCAGATTCCCCCGTATTATT
GTATGCCCGACGGGCGTGGTACGCTTGCGACGCCTCCTTGGAGTACGTCA
TGGTTGTTGGAGACAATGGATGAGAAGGGGTGGCGAATAGCGGCGAATGA
GTGGGACCCTTTTGTGAGGTCGAAATTTGCGATTGGCGATGCGGTTTTCG
CGACGACTCTGCGTGACCCTACGGATCGGTGGTTCTCCCAATACAGGTTT
GAGCACTTGGAGCATCGTGATGGAAGCTCGGAGGATGAGACACCCGTGCC
GTTTCGCGAGTGGTACGATAAGATGGTGACATGGAATATGGGTGATAATT
ACTATGTGAAGACGTTTTTGGGAGAGGAAGATCCGATGGATAAAGATGCG
TTGGAGAAAAAAGGCCGGAATGGTGTCCCGCTTGTGCACAATGATTTCTA
TTGGGGTTATCACAAATACCAGGAGCGGGTGTTTGAATGGACTGATTTTA
ATGTGGCTATTGATACTGTGAGAAGGTTTCATGTGGTGTTGGTGCTTGAG
TGGTTGAAAGATTCTGATAAGATGATTGAGGAAATATTTGGGTGGTCTCA
GGCTCCGAGGCAGGTTTTGCCTCATGAGGTGCAGGCGGTACGGAGTGATA
AGAAGAGTAAAAGTGCCAGAGACTCGCTCGGAGAGGAGTTGTTTGAGGAG
ATAAGGAAAAGGAATGTGATAGATCATTTGTTTTACGCGGTGACGCGGAG
AATTTTCTTGGAACGATATGCGTGTGGGGAGGTTTAGCTAGAGGCAGAGA
TACGGAAGGGGAGATTATTCATGAGGAGACGGATAATTGCGGAATTGGAG
GAGTGATCTCTGCTTGAGATTTACTACATGCATGTATAGGGAAAGGCCCA
AAAGAGCAATTAGCATATGACTAGAA

protein sequence of jgi.p|Nanoce1779_2|597280

>mRNA_6536-protein ID=mRNA_6536-protein|Name=jgi.p|Nanoce1779_2|597280|organism=Nannochloropsis oceanica|type=polypeptide|length=608bp
MVEPYLHRHYAPPSSASSAVAHTRRPRSSSSFYGRAAARLPHLRMDATLF
LLIVCFTMGVYLPGLVGMSPRIDSVGGGSGALFSRSSNNKGVDLHALQAH
VQNLMMRITEAEAETALMSEENQKLRLDNKVEQSYLKTMTKAKNDEIRVL
KARIKEVEGKMSACEQQQDEGTDKEELRKAELRTESLEKELKGLHTQLEL
AMKENSHQEPVMKASVPPPRAVQEEQQQERQQRRQMQKSNSIKPLITYRT
VSVPEPQPLNSYWETRLRKLFSLAQTDPVSLLSKLDDPQNDPLDVKFASP
ENFTCPPPEQRLTQPDLRRMEMAAQFRDGQGFIFFQHLRKAGGTGFCDLA
TRNMPKQIPPYYCMPDGRGTLATPPWSTSWLLETMDEKGWRIAANEWDPF
VRSKFAIGDAVFATTLRDPTDRWFSQYRFEHLEHRDGSSEDETPVPFREW
YDKMVTWNMGDNYYVKTFLGEEDPMDKDALEKKGRNGVPLVHNDFYWGYH
KYQERVFEWTDFNVAIDTVRRFHVVLVLEWLKDSDKMIEEIFGWSQAPRQ
VLPHEVQAVRSDKKSKSARDSLGEELFEEIRKRNVIDHLFYAVTRRIFLE
RYACGEV*

mRNA from alignment at scaffold_18:106722..108697+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6536 ID=mRNA_6536|Name=jgi.p|Nanoce1779_2|597280|organism=Nannochloropsis oceanica|type=mRNA|length=1976bp|location=Sequence derived from alignment at scaffold_18:106722..108697+ (Nannochloropsis oceanica)
ACAGGAAGGCGTCATGGTTGAGCCCTACCTGCACCGTCACTACGCTCCGC
CCTCGTCCGCCTCCTCGGCGGTCGCCCACACCCGCCGGCCCCGTTCTTCT
TCCTCCTTCTATGGCCGGGCCGCCGCCCGACTGCCTCACCTGCGCATGGA
TGCGACTCTGTTCCTGCTCATTGTATGCTTCACAATGGGCGTCTACCTTC
CCGGCTTGGTCGGAATGTCCCCGCGGATTGATTCGGTCGGCGGTGGGAGC
GGTGCTCTTTTCAGCCGCAGCAGCAACAACAAAGGGGTGGACTTGCACGC
TCTGCAAGCGCACGTTCAAAACCTGATGATGCGCATCACCGAGGCCGAAG
CCGAGACCGCTCTCATGTCTGAAGAGAATCAAAAGCTGCGCTTGGATAAC
AAGGTAGAACAGTCCTACCTTAAAACCATGACGAAGGCCAAGAACGATGA
AATCCGCGTGCTCAAGGCCCGGATAAAAGAGGTAGAGGGCAAGATGTCTG
CTTGTGAGCAGCAACAAGATGAAGGTACCGACAAGGAAGAGCTACGCAAG
GCAGAACTGCGGACAGAATCGCTTGAAAAGGAACTGAAGGGTCTCCACAC
GCAGCTGGAGCTTGCAATGAAGGAAAATTCGCATCAAGAGCCCGTGATGA
AGGCAAGTGTCCCACCGCCGCGAGCAGTTCAAGAGGAGCAGCAGCAGGAG
CGGCAGCAGAGACGGCAAATGCAAAAATCCAATAGTATTAAACCCCTGAT
AACATACAGGACCGTCTCCGTCCCCGAGCCCCAACCACTAAATTCTTATT
GGGAAACACGTCTACGGAAGCTCTTTTCCCTTGCCCAGACCGACCCCGTA
TCCCTCCTCTCCAAGCTTGACGACCCCCAAAATGACCCCTTAGACGTCAA
ATTTGCAAGCCCTGAAAATTTTACCTGTCCTCCTCCCGAACAACGCCTCA
CGCAACCCGATCTAAGACGGATGGAGATGGCAGCTCAATTTCGTGATGGG
CAGGGGTTTATTTTTTTCCAGCATTTGCGAAAGGCGGGCGGGACGGGTTT
CTGCGATTTGGCCACCAGGAACATGCCTAAGCAGATTCCCCCGTATTATT
GTATGCCCGACGGGCGTGGTACGCTTGCGACGCCTCCTTGGAGTACGTCA
TGGTTGTTGGAGACAATGGATGAGAAGGGGTGGCGAATAGCGGCGAATGA
GTGGGACCCTTTTGTGAGGTCGAAATTTGCGATTGGCGATGCGGTTTTCG
CGACGACTCTGCGTGACCCTACGGATCGGTGGTTCTCCCAATACAGGTTT
GAGCACTTGGAGCATCGTGATGGAAGCTCGGAGGATGAGACACCCGTGCC
GTTTCGCGAGTGGTACGATAAGATGGTGACATGGAATATGGGTGATAATT
ACTATGTGAAGACGTTTTTGGGAGAGGAAGATCCGATGGATAAAGATGCG
TTGGAGAAAAAAGGCCGGAATGGTGTCCCGCTTGTGCACAATGATTTCTA
TTGGGGTTATCACAAATACCAGGAGCGGGTGTTTGAATGGACTGATTTTA
ATGTGGCTATTGATACTGTGAGAAGGTTTCATGTGGTGTTGGTGCTTGAG
TGGTTGAAAGATTCTGATAAGATGATTGAGGAAATATTTGGGTGGTCTCA
GGCTCCGAGGCAGGTTTTGCCTCATGAGGTGCAGGCGGTACGGAGTGATA
AGAAGAGTAAAAGTGCCAGAGACTCGCTCGGAGAGGAGTTGTTTGAGGAG
ATAAGGAAAAGGAATGTGATAGATCATTTGTTTTACGCGGTGACGCGGAG
AATTTTCTTGGAACGATATGCGTGTGGGGAGGTTTAGCTAGAGGCAGAGA
TACGGAAGGGGAGATTATTCATGAGGAGACGGATAATTGCGGAATTGGAG
GAGTGATCTCTGCTTGAGATTTACTACATGCATGTATAGGGAAAGGCCCA
AAAGAGCAATTAGCATATGACTAGAA

Coding sequence (CDS) from alignment at scaffold_18:106722..108697+

>mRNA_6536 ID=mRNA_6536|Name=jgi.p|Nanoce1779_2|597280|organism=Nannochloropsis oceanica|type=CDS|length=1824bp|location=Sequence derived from alignment at scaffold_18:106722..108697+ (Nannochloropsis oceanica)
ATGGTTGAGCCCTACCTGCACCGTCACTACGCTCCGCCCTCGTCCGCCTC
CTCGGCGGTCGCCCACACCCGCCGGCCCCGTTCTTCTTCCTCCTTCTATG
GCCGGGCCGCCGCCCGACTGCCTCACCTGCGCATGGATGCGACTCTGTTC
CTGCTCATTGTATGCTTCACAATGGGCGTCTACCTTCCCGGCTTGGTCGG
AATGTCCCCGCGGATTGATTCGGTCGGCGGTGGGAGCGGTGCTCTTTTCA
GCCGCAGCAGCAACAACAAAGGGGTGGACTTGCACGCTCTGCAAGCGCAC
GTTCAAAACCTGATGATGCGCATCACCGAGGCCGAAGCCGAGACCGCTCT
CATGTCTGAAGAGAATCAAAAGCTGCGCTTGGATAACAAGGTAGAACAGT
CCTACCTTAAAACCATGACGAAGGCCAAGAACGATGAAATCCGCGTGCTC
AAGGCCCGGATAAAAGAGGTAGAGGGCAAGATGTCTGCTTGTGAGCAGCA
ACAAGATGAAGGTACCGACAAGGAAGAGCTACGCAAGGCAGAACTGCGGA
CAGAATCGCTTGAAAAGGAACTGAAGGGTCTCCACACGCAGCTGGAGCTT
GCAATGAAGGAAAATTCGCATCAAGAGCCCGTGATGAAGGCAAGTGTCCC
ACCGCCGCGAGCAGTTCAAGAGGAGCAGCAGCAGGAGCGGCAGCAGAGAC
GGCAAATGCAAAAATCCAATAGTATTAAACCCCTGATAACATACAGGACC
GTCTCCGTCCCCGAGCCCCAACCACTAAATTCTTATTGGGAAACACGTCT
ACGGAAGCTCTTTTCCCTTGCCCAGACCGACCCCGTATCCCTCCTCTCCA
AGCTTGACGACCCCCAAAATGACCCCTTAGACGTCAAATTTGCAAGCCCT
GAAAATTTTACCTGTCCTCCTCCCGAACAACGCCTCACGCAACCCGATCT
AAGACGGATGGAGATGGCAGCTCAATTTCGTGATGGGCAGGGGTTTATTT
TTTTCCAGCATTTGCGAAAGGCGGGCGGGACGGGTTTCTGCGATTTGGCC
ACCAGGAACATGCCTAAGCAGATTCCCCCGTATTATTGTATGCCCGACGG
GCGTGGTACGCTTGCGACGCCTCCTTGGAGTACGTCATGGTTGTTGGAGA
CAATGGATGAGAAGGGGTGGCGAATAGCGGCGAATGAGTGGGACCCTTTT
GTGAGGTCGAAATTTGCGATTGGCGATGCGGTTTTCGCGACGACTCTGCG
TGACCCTACGGATCGGTGGTTCTCCCAATACAGGTTTGAGCACTTGGAGC
ATCGTGATGGAAGCTCGGAGGATGAGACACCCGTGCCGTTTCGCGAGTGG
TACGATAAGATGGTGACATGGAATATGGGTGATAATTACTATGTGAAGAC
GTTTTTGGGAGAGGAAGATCCGATGGATAAAGATGCGTTGGAGAAAAAAG
GCCGGAATGGTGTCCCGCTTGTGCACAATGATTTCTATTGGGGTTATCAC
AAATACCAGGAGCGGGTGTTTGAATGGACTGATTTTAATGTGGCTATTGA
TACTGTGAGAAGGTTTCATGTGGTGTTGGTGCTTGAGTGGTTGAAAGATT
CTGATAAGATGATTGAGGAAATATTTGGGTGGTCTCAGGCTCCGAGGCAG
GTTTTGCCTCATGAGGTGCAGGCGGTACGGAGTGATAAGAAGAGTAAAAG
TGCCAGAGACTCGCTCGGAGAGGAGTTGTTTGAGGAGATAAGGAAAAGGA
ATGTGATAGATCATTTGTTTTACGCGGTGACGCGGAGAATTTTCTTGGAA
CGATATGCGTGTGGGGAGGTTTAG

Synonyms

Publications