jgi.p|Nanoce1779_2|530970, mRNA_6534 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|530970
Unique NamemRNA_6534
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length315
Alignment locationscaffold_18:104827..105141 +

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Properties
Property NameValue
TranscriptId531056
TrackFilteredModels2
ProteinId530970
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:104827..105141 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|530970gene_6534Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|530970mRNA_6534-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6534CDS_6534Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6534 ID=mRNA_6534|Name=jgi.p|Nanoce1779_2|530970|organism=Nannochloropsis oceanica|type=mRNA|length=315bp
ATGCACCGGGCCAGTAGCACCGATGCCTCTCCCTCCCTTGAGGCACTGTC
TTGCCTACAACGACCTCGGGCCCCATCTGACTCCACCTCCTCCCACCACG
ACCCGCACCATCACCAACGTGCGCATATCCGTCGGGTCCTCCAAGCGCGA
CATGCCTTTGAGGTGCTTGAGCTGCCACTGCAGACCACGAGTCCTGTGAC
AGTGCGCCGGGCGTTCCGAAAGTTTGCTCTCCAGCTGCACCCAGATAAGA
ACGCCGCGCCAGACGCCCAAAAGGCATTCATTCGACTATCGGAAGCCCAC
GAGGTACTGCGAGAC
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protein sequence of jgi.p|Nanoce1779_2|530970

>mRNA_6534-protein ID=mRNA_6534-protein|Name=jgi.p|Nanoce1779_2|530970|organism=Nannochloropsis oceanica|type=polypeptide|length=105bp
MHRASSTDASPSLEALSCLQRPRAPSDSTSSHHDPHHHQRAHIRRVLQAR
HAFEVLELPLQTTSPVTVRRAFRKFALQLHPDKNAAPDAQKAFIRLSEAH
EVLRD
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mRNA from alignment at scaffold_18:104827..105141+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6534 ID=mRNA_6534|Name=jgi.p|Nanoce1779_2|530970|organism=Nannochloropsis oceanica|type=mRNA|length=315bp|location=Sequence derived from alignment at scaffold_18:104827..105141+ (Nannochloropsis oceanica)
ATGCACCGGGCCAGTAGCACCGATGCCTCTCCCTCCCTTGAGGCACTGTC
TTGCCTACAACGACCTCGGGCCCCATCTGACTCCACCTCCTCCCACCACG
ACCCGCACCATCACCAACGTGCGCATATCCGTCGGGTCCTCCAAGCGCGA
CATGCCTTTGAGGTGCTTGAGCTGCCACTGCAGACCACGAGTCCTGTGAC
AGTGCGCCGGGCGTTCCGAAAGTTTGCTCTCCAGCTGCACCCAGATAAGA
ACGCCGCGCCAGACGCCCAAAAGGCATTCATTCGACTATCGGAAGCCCAC
GAGGTACTGCGAGAC
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Coding sequence (CDS) from alignment at scaffold_18:104827..105141+

>mRNA_6534 ID=mRNA_6534|Name=jgi.p|Nanoce1779_2|530970|organism=Nannochloropsis oceanica|type=CDS|length=315bp|location=Sequence derived from alignment at scaffold_18:104827..105141+ (Nannochloropsis oceanica)
ATGCACCGGGCCAGTAGCACCGATGCCTCTCCCTCCCTTGAGGCACTGTC
TTGCCTACAACGACCTCGGGCCCCATCTGACTCCACCTCCTCCCACCACG
ACCCGCACCATCACCAACGTGCGCATATCCGTCGGGTCCTCCAAGCGCGA
CATGCCTTTGAGGTGCTTGAGCTGCCACTGCAGACCACGAGTCCTGTGAC
AGTGCGCCGGGCGTTCCGAAAGTTTGCTCTCCAGCTGCACCCAGATAAGA
ACGCCGCGCCAGACGCCCAAAAGGCATTCATTCGACTATCGGAAGCCCAC
GAGGTACTGCGAGAC
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Synonyms
Publications