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Properties
| Property Name | Value |
|---|
| TranscriptId | 597359 |
| Track | FilteredModels2 |
| ProteinId | 597273 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_18 | supercontig | scaffold_18:100310..102401 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6532 ID=mRNA_6532|Name=jgi.p|Nanoce1779_2|597273|organism=Nannochloropsis oceanica|type=mRNA|length=1515bp
AGGCATCCGGAGGAGGGGTCGCCTACGGACAAGCGAATAGGAGAAGGAGT
TGCAAGACTAGCCAGGCGCGCCCGTATTTTCGACCATCCACCCCCTCGAA
GAGAACAAACTGCCGGCCTCGTTCAATCCACTCCACCCTCCACCTAGCCA
CCACTTCCATGACCGCGATGCTTCCCCGCCAAGCCCTGCGACATGTCTCC
CGCAGCCTCGTGCGCGCCAAGCCCACGAGTAACTGCAGCACCACCGCCGC
AAGCAACACGTCCGCCCTAATGGCGAGAAGATGCGCCCTCCAGCAGTCTG
CGCGCTCCATGGCCTCTGTGGGCGCCTTACTCGACCAGATCACGTTTGAG
ATTCCTCTCAAGGAGGCCCTGCAGTACCCCAAGGGCAAGGAAAAATGGAC
GAGGGCGGACATCAAGTTGGCAGCAGACGGGTTGGCTGCAGGATTTTTGG
ACCTGGGCTTGCAGCCGGGGGACACGATCGCCGCCTGGCTTCCAGGGGAT
GATGCCGATTTGCACATCACCCAATTCGGCGCCGCCAAAGCCGGGATCAC
CCTGGCCATGCTCGATTGGAATATTAGCAAGGAAGGCCTCGAGAAGACCC
TACTTGATACCAACGCCAAAGCCCTTATTTATGCTCCTCAACGCGACGAC
ACCGACCTGACCGCCCTCCTTCAGTCTCTCATTCCCGAGCTTGCCACCTA
TGACGATGGTACCGGCGTCCCTTTCCGTTCCCGCAAGTTCCCCCACCTTA
AATTCTTGGTCCACACGGGCTTCGACGTGATCCAGGGCGTGGAGAACCTT
AAGCATATCTTCCTGCCCCTGGAGCCAGAGCGCAGTCCCTTGCCGGCCAT
CCAGGCGTTGGTCAGTGACAACACTCCTTTGTTCTTACCCGTAGCCGCGG
ACGGGAGTCGGGGAGGGTCGGTGTTGAGCCATGCGGACGTGCTGAGTAAA
CAACTGTGGCCGGTGGTGTCCGGGGTTTTGAATAAAAAGTTGGTCAATGT
GGCAGCGGCTGCCGGGGGGGCGAATTAAGGGGGGGAAAAGAGGAAGGATT
TATGGACGGAGGGGGAGAAGTGCACTGGAAGGAGGGTGTTTGTAGGAAAG
GCGGAGGAACGGGGGGGGGGAGAAAGGGATATGATTACGACGGGGGGGAG
AAATGATAGGGAGTAAGAGATGACGGCTTGTGAGTGGTTGCCATAGTAGA
AGGAAAGGAGGGAAGTGGAGAGGATGGCAACGTATGGATATTTAAATGGA
GCGGAGGAGAGGGGAAAAGGAGACTGATTTATGGTTGTCGGAAAGTTCAT
TTTTTTCTTTATGTATGGGGGGTAGTGCGACGTGGAGGAGGGGCTGATGA
TTCTTTTTGTCTGTGGAAGTGAGAGATCAATGGAGAAAGGGGTTGGGGGA
GGGGGTGAGGGGGAGATGGGGAGAAGGAGAAAAGAGAGACGGAGGATCAT
TGCGGCGAGGAGGAGGAAGAGGAGAAGGAGGGAGGAAGGTCGAAGAAAGG
GCAAGGGAAAGGGGG back to topprotein sequence of jgi.p|Nanoce1779_2|597273 >mRNA_6532-protein ID=mRNA_6532-protein|Name=jgi.p|Nanoce1779_2|597273|organism=Nannochloropsis oceanica|type=polypeptide|length=290bp
MTAMLPRQALRHVSRSLVRAKPTSNCSTTAASNTSALMARRCALQQSARS
MASVGALLDQITFEIPLKEALQYPKGKEKWTRADIKLAADGLAAGFLDLG
LQPGDTIAAWLPGDDADLHITQFGAAKAGITLAMLDWNISKEGLEKTLLD
TNAKALIYAPQRDDTDLTALLQSLIPELATYDDGTGVPFRSRKFPHLKFL
VHTGFDVIQGVENLKHIFLPLEPERSPLPAIQALVSDNTPLFLPVAADGS
RGGSVLSHADVLSKQLWPVVSGVLNKKLVNVAAAAGGAN* back to topmRNA from alignment at scaffold_18:100310..102401- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6532 ID=mRNA_6532|Name=jgi.p|Nanoce1779_2|597273|organism=Nannochloropsis oceanica|type=mRNA|length=2092bp|location=Sequence derived from alignment at scaffold_18:100310..102401- (Nannochloropsis oceanica)
AGGCATCCGGAGGAGGGGTCGCCTACGGACAAGCGAATAGGAGAAGGAGT
TGCAAGACTAGCCAGGCGCGCCCGTATTTTCGACCATCCACCCCCTCGAA
GAGAACAAACTGCCGGCCTCGTTCAATCCACTCCACCCTCCACCTAGCCA
CCACTTCCATGACCGCGATGCTTCCCCGCCAAGCCCTGCGACATGTCTCC
CGCAGCCTCGTGCGCGCCAAGCCCACGAGTAACTGCAGCACCACCGCCGC
AAGCAACACGTCCGCCCTAATGGCGAGAAGATGCGCCCTCCAGCAGTCTG
GTAAGTAACAGCTTTCGGACCACCACGCAATCGATGCGCCCATCTGACCA
CCCCTTTTGGTTCCTTCTCCAGCTTTCTCCTCCCTTCTCATTACTCATCG
ATTTGTTGCGTTAACGCCACGCACACAAAACCAACAGCGCGCTCCATGGC
CTCTGTGGGCGCCTTACTCGACCAGATCACGTTTGAGATTCCTCTCAAGG
AGGCCCTGCAGTACCCCAAGGGCAAGGAAAAATGGACGAGGGCGGACATC
AAGGTACGTTTATGTAGGCAGGAAGAGGGGGAGGGAAGGGGGGGGGGGAT
GACGGGCTATTGTGTAAAAGTACGGGACATACAAGATGCGAGGAAGAGAA
AATAGCTCGAGGGGAGAGAGGCGGGTCAGGAACCCTCATCATGCATAGGC
ATGCACTCACACGTTGATTGTTTTTACACTTGTTCTATTCTCTCATGTTG
CAGTTGGCAGCAGACGGGTTGGCTGCAGGATTTTTGGACCTGGGCTTGCA
GCCGGGGGACACGATCGCCGCCTGGCTTCCAGGGGATGATGCCGATTTGG
TGAGTGAAGAGAGGGACGATTGGTTGGTGACAATAAATGATGGAGAAGGA
GTAACTAAACGACAGCAAGTGGTGGAGAAAGAGGATGTGAAAGGATGAGA
GAGCGCAATCAGGGAGGGAGGGGGGGGAGGTTGCGGTGCCGGCTTCTTTA
TCCCTCACTCCCTGCCTTTTATTGCATCTCCCATTGTCCCTTTCGCTCCC
CCTTCCCTCCCCCCGTCCCTTCTTCTCCTTTCCTCATAGCACATCACCCA
ATTCGGCGCCGCCAAAGCCGGGATCACCCTGGCCATGCTCGATTGGAATA
TTAGCAAGGAAGGCCTCGAGAAGACCCTACTTGATACCAACGCCAAAGCC
CTTATTTATGCTCCTCAACGCGACGACACCGACCTGACCGCCCTCCTTCA
GTCTCTCATTCCCGAGCTTGCCACCTATGACGATGGTACCGGCGTCCCTT
TCCGTTCCCGCAAGTTCCCCCACCTTAAATTCTTGGTCCACACGGGCTTC
GACGTGATCCAGGGCGTGGAGAACCTTAAGCATATCTTCCTGCCCCTGGA
GCCAGAGCGCAGTCCCTTGCCGGCCATCCAGGCGTTGGTCAGTGACAACA
CTCCTTTGTTCTTACCCGTAGCCGCGGACGGGAGTCGGGGAGGGTCGGTG
TTGAGCCATGCGGACGTGCTGAGTAAACAACTGTGGCCGGTGGTGTCCGG
GGTTTTGAATAAAAAGTTGGTCAATGTGGCAGCGGCTGCCGGGGGGGCGA
ATTAAGGGGGGGAAAAGAGGAAGGATTTATGGACGGAGGGGGAGAAGTGC
ACTGGAAGGAGGGTGTTTGTAGGAAAGGCGGAGGAACGGGGGGGGGGAGA
AAGGGATATGATTACGACGGGGGGGAGAAATGATAGGGAGTAAGAGATGA
CGGCTTGTGAGTGGTTGCCATAGTAGAAGGAAAGGAGGGAAGTGGAGAGG
ATGGCAACGTATGGATATTTAAATGGAGCGGAGGAGAGGGGAAAAGGAGA
CTGATTTATGGTTGTCGGAAAGTTCATTTTTTTCTTTATGTATGGGGGGT
AGTGCGACGTGGAGGAGGGGCTGATGATTCTTTTTGTCTGTGGAAGTGAG
AGATCAATGGAGAAAGGGGTTGGGGGAGGGGGTGAGGGGGAGATGGGGAG
AAGGAGAAAAGAGAGACGGAGGATCATTGCGGCGAGGAGGAGGAAGAGGA
GAAGGAGGGAGGAAGGTCGAAGAAAGGGCAAGGGAAAGGGGG back to topCoding sequence (CDS) from alignment at scaffold_18:100310..102401- >mRNA_6532 ID=mRNA_6532|Name=jgi.p|Nanoce1779_2|597273|organism=Nannochloropsis oceanica|type=CDS|length=3480bp|location=Sequence derived from alignment at scaffold_18:100310..102401- (Nannochloropsis oceanica)
CACATCACCCAATTCGGCGCCGCCAAAGCCGGGATCACCCTGGCCATGCT
CGATTGGAATATTAGCAAGGAAGGCCTCGAGAAGACCCTACTTGATACCA
ACGCCAAAGCCCTTATTTATGCTCCTCAACGCGACGACACCGACCTGACC
GCCCTCCTTCAGTCTCTCATTCCCGAGCTTGCCACCTATGACGATGGTAC
CGGCGTCCCTTTCCGTTCCCGCAAGTTCCCCCACCTTAAATTCTTGGTCC
ACACGGGCTTCGACGTGATCCAGGGCGTGGAGAACCTTAAGCATATCTTC
CTGCCCCTGGAGCCAGAGCGCAGTCCCTTGCCGGCCATCCAGGCGTTGGT
CAGTGACAACACTCCTTTGTTCTTACCCGTAGCCGCGGACGGGAGTCGGG
GAGGGTCGGTGTTGAGCCATGCGGACGTGCTGAGTAAACAACTGTGGCCG
GTGGTGTCCGGGGTTTTGAATAAAAAGTTGGTCAATGTGGCAGCGGCTGC
CGGGGGGGCGAATTAATTGGCAGCAGACGGGTTGGCTGCAGGATTTTTGG
ACCTGGGCTTGCAGCCGGGGGACACGATCGCCGCCTGGCTTCCAGGGGAT
GATGCCGATTTGCGCGCTCCATGGCCTCTGTGGGCGCCTTACTCGACCAG
ATCACGTTTGAGATTCCTCTCAAGGAGGCCCTGCAGTACCCCAAGGGCAA
GGAAAAATGGACGAGGGCGGACATCAAGATGACCGCGATGCTTCCCCGCC
AAGCCCTGCGACATGTCTCCCGCAGCCTCGTGCGCGCCAAGCCCACGAGT
AACTGCAGCACCACCGCCGCAAGCAACACGTCCGCCCTAATGGCGAGAAG
ATGCGCCCTCCAGCAGTCTGCACATCACCCAATTCGGCGCCGCCAAAGCC
GGGATCACCCTGGCCATGCTCGATTGGAATATTAGCAAGGAAGGCCTCGA
GAAGACCCTACTTGATACCAACGCCAAAGCCCTTATTTATGCTCCTCAAC
GCGACGACACCGACCTGACCGCCCTCCTTCAGTCTCTCATTCCCGAGCTT
GCCACCTATGACGATGGTACCGGCGTCCCTTTCCGTTCCCGCAAGTTCCC
CCACCTTAAATTCTTGGTCCACACGGGCTTCGACGTGATCCAGGGCGTGG
AGAACCTTAAGCATATCTTCCTGCCCCTGGAGCCAGAGCGCAGTCCCTTG
CCGGCCATCCAGGCGTTGGTCAGTGACAACACTCCTTTGTTCTTACCCGT
AGCCGCGGACGGGAGTCGGGGAGGGTCGGTGTTGAGCCATGCGGACGTGC
TGAGTAAACAACTGTGGCCGGTGGTGTCCGGGGTTTTGAATAAAAAGTTG
GTCAATGTGGCAGCGGCTGCCGGGGGGGCGAATTAATTGGCAGCAGACGG
GTTGGCTGCAGGATTTTTGGACCTGGGCTTGCAGCCGGGGGACACGATCG
CCGCCTGGCTTCCAGGGGATGATGCCGATTTGCGCGCTCCATGGCCTCTG
TGGGCGCCTTACTCGACCAGATCACGTTTGAGATTCCTCTCAAGGAGGCC
CTGCAGTACCCCAAGGGCAAGGAAAAATGGACGAGGGCGGACATCAAGAT
GACCGCGATGCTTCCCCGCCAAGCCCTGCGACATGTCTCCCGCAGCCTCG
TGCGCGCCAAGCCCACGAGTAACTGCAGCACCACCGCCGCAAGCAACACG
TCCGCCCTAATGGCGAGAAGATGCGCCCTCCAGCAGTCTGCACATCACCC
AATTCGGCGCCGCCAAAGCCGGGATCACCCTGGCCATGCTCGATTGGAAT
ATTAGCAAGGAAGGCCTCGAGAAGACCCTACTTGATACCAACGCCAAAGC
CCTTATTTATGCTCCTCAACGCGACGACACCGACCTGACCGCCCTCCTTC
AGTCTCTCATTCCCGAGCTTGCCACCTATGACGATGGTACCGGCGTCCCT
TTCCGTTCCCGCAAGTTCCCCCACCTTAAATTCTTGGTCCACACGGGCTT
CGACGTGATCCAGGGCGTGGAGAACCTTAAGCATATCTTCCTGCCCCTGG
AGCCAGAGCGCAGTCCCTTGCCGGCCATCCAGGCGTTGGTCAGTGACAAC
ACTCCTTTGTTCTTACCCGTAGCCGCGGACGGGAGTCGGGGAGGGTCGGT
GTTGAGCCATGCGGACGTGCTGAGTAAACAACTGTGGCCGGTGGTGTCCG
GGGTTTTGAATAAAAAGTTGGTCAATGTGGCAGCGGCTGCCGGGGGGGCG
AATTAATTGGCAGCAGACGGGTTGGCTGCAGGATTTTTGGACCTGGGCTT
GCAGCCGGGGGACACGATCGCCGCCTGGCTTCCAGGGGATGATGCCGATT
TGCGCGCTCCATGGCCTCTGTGGGCGCCTTACTCGACCAGATCACGTTTG
AGATTCCTCTCAAGGAGGCCCTGCAGTACCCCAAGGGCAAGGAAAAATGG
ACGAGGGCGGACATCAAGATGACCGCGATGCTTCCCCGCCAAGCCCTGCG
ACATGTCTCCCGCAGCCTCGTGCGCGCCAAGCCCACGAGTAACTGCAGCA
CCACCGCCGCAAGCAACACGTCCGCCCTAATGGCGAGAAGATGCGCCCTC
CAGCAGTCTGCACATCACCCAATTCGGCGCCGCCAAAGCCGGGATCACCC
TGGCCATGCTCGATTGGAATATTAGCAAGGAAGGCCTCGAGAAGACCCTA
CTTGATACCAACGCCAAAGCCCTTATTTATGCTCCTCAACGCGACGACAC
CGACCTGACCGCCCTCCTTCAGTCTCTCATTCCCGAGCTTGCCACCTATG
ACGATGGTACCGGCGTCCCTTTCCGTTCCCGCAAGTTCCCCCACCTTAAA
TTCTTGGTCCACACGGGCTTCGACGTGATCCAGGGCGTGGAGAACCTTAA
GCATATCTTCCTGCCCCTGGAGCCAGAGCGCAGTCCCTTGCCGGCCATCC
AGGCGTTGGTCAGTGACAACACTCCTTTGTTCTTACCCGTAGCCGCGGAC
GGGAGTCGGGGAGGGTCGGTGTTGAGCCATGCGGACGTGCTGAGTAAACA
ACTGTGGCCGGTGGTGTCCGGGGTTTTGAATAAAAAGTTGGTCAATGTGG
CAGCGGCTGCCGGGGGGGCGAATTAATTGGCAGCAGACGGGTTGGCTGCA
GGATTTTTGGACCTGGGCTTGCAGCCGGGGGACACGATCGCCGCCTGGCT
TCCAGGGGATGATGCCGATTTGCGCGCTCCATGGCCTCTGTGGGCGCCTT
ACTCGACCAGATCACGTTTGAGATTCCTCTCAAGGAGGCCCTGCAGTACC
CCAAGGGCAAGGAAAAATGGACGAGGGCGGACATCAAGATGACCGCGATG
CTTCCCCGCCAAGCCCTGCGACATGTCTCCCGCAGCCTCGTGCGCGCCAA
GCCCACGAGTAACTGCAGCACCACCGCCGCAAGCAACACGTCCGCCCTAA
TGGCGAGAAGATGCGCCCTCCAGCAGTCTG back to top
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