jgi.p|Nanoce1779_2|597268, mRNA_6531 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597268
Unique NamemRNA_6531
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length738
Alignment locationscaffold_18:98667..99908 +

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Properties
Property NameValue
TranscriptId597354
TrackFilteredModels2
ProteinId597268
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:98667..99908 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597268gene_6531Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597268mRNA_6531-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6531CDS_6531Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6531 ID=mRNA_6531|Name=jgi.p|Nanoce1779_2|597268|organism=Nannochloropsis oceanica|type=mRNA|length=738bp
AGATCACAGGCAAGGGAAGCCGCTTTACCTTCTCCAGCAGCCACCGGGAC
AATCATGTCCTCTGCATTGACTCGCGCCTTCCGCCGCGTGGCGACCACGC
CCAGGAACGTCCGTCGTTTCGGATCCTCTAACGGCGACCATGGTGCAGAG
GAGGTGGAAAAGTGGCGCAAAGTCTCCATCGCCGCTACGGGCATCGTCGT
CCTCTTTTCGCTCAAAGAGATGGTTGACATGGCCGGAGGCCACCACGGGG
CGCACAGCGACAAGCCTCTGCCGGACTACATGCAGATCCGCTCGAAGCCC
TTTCCCTGGGAGTGCTCCTCGTGCTCCTTGTTTGACACGGATTGCTTCAA
GAAGTGCAAGGCGGAGAGGGCAGGGGATTTGGTGGAGGACGACCACTAGG
GAAGGAAGGAAAGTGGATGAGAAGGAGTGCCGGGGTCTACGTGGGATGAG
GGCTCTTGCCTTCCCTATTTCTCTCGACCGCGCGTTCTCTCCTCTCGACT
CGACGTATTTTTGTAGCTATGTATCAGGGGCCCGTTCGATGGGGTTTATG
GAAAGGATAGGGCGGAGGACGAAGGGAGGAGAGGAGGGAGGGTATCGCAG
AGTCTGGAAGCGGGATGAAGGAGACAGGTGGAGCCGGAGTGTGGGATTTT
GGAAAGGAAGCAATTGAAGGAGATTAGAGACGAAAAAAAAACAACCATAT
CAACTTAAAATGCAAGAGTAACAGTTCTAGGAAAAAAA
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protein sequence of jgi.p|Nanoce1779_2|597268

>mRNA_6531-protein ID=mRNA_6531-protein|Name=jgi.p|Nanoce1779_2|597268|organism=Nannochloropsis oceanica|type=polypeptide|length=115bp
MSSALTRAFRRVATTPRNVRRFGSSNGDHGAEEVEKWRKVSIAATGIVVL
FSLKEMVDMAGGHHGAHSDKPLPDYMQIRSKPFPWECSSCSLFDTDCFKK
CKAERAGDLVEDDH*
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mRNA from alignment at scaffold_18:98667..99908+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6531 ID=mRNA_6531|Name=jgi.p|Nanoce1779_2|597268|organism=Nannochloropsis oceanica|type=mRNA|length=1242bp|location=Sequence derived from alignment at scaffold_18:98667..99908+ (Nannochloropsis oceanica)
AGATCACAGGCAAGGGAAGCCGCTTTACCTTCTCCAGCAGCCACCGGGAC
AATCATGGTAGGTGTCATAGTGTGGTGGACGTCGGCAGGGCCAAACGCCC
CTTGTTTCTCCCCACACCTGTGCATGCCCTCCTCGAGCTCCCTTTGCGCA
ACAAACCTGGCCTCACATTACATACATCTACGTACATATATGCCATGCAC
AGTCCTCTGCATTGACTCGCGCCTTCCGCCGCGTGGCGACCACGCCCAGG
AACGTCCGTCGTTTCGGATCCTCTAACGGCGACCATGGTGGTAAGTTTTC
TCATCAAGAATGGAGAGGGATTTGGAGCGAGGAAGCATGGAATGCTTTTG
TTTGAAATTGCTATGGATTGACTTTAGAATGTTAGGCATCTTTAAGGCTC
ACGGGAGGCTTGAGGCAGAGAAATGGTGAGAGGCTCGAGAGAGAAAGAGG
AGCCTCGTCGTCCGTGCTTCTTCTATCAAATGCACGCCTGCTGGCCGTCT
AAAGGCGTCTCCTCGCGGCAGAATGAAGTTATTGGGATTCCGGACTGTCC
AAGCACAGGTTGCCTGACTCGGTAAGAATGTATAAATACTTATCTCTAAC
CCCTCCTCCCCTCCCCTCTCCTCCCCCCCATCCAAACACAAAACAACAGC
AGAGGAGGTGGAAAAGTGGCGCAAAGTCTCCATCGCCGCTACGGGCATCG
TCGTCCTCTTTTCGCTCAAAGAGATGGTTGACATGGCCGGAGGCCACCAC
GGGGCGCACAGCGACAAGCCTCTGCCGGACTACATGCAGATCCGCTCGAA
GCCCTTTCCCTGGGAGTGCTCCTCGTGCTCCTTGTTTGACACGGATTGCT
TCAAGAAGTGCAAGGCGGAGAGGGCAGGGGATTTGGTGGAGGACGACCAC
TAGGGAAGGAAGGAAAGTGGATGAGAAGGAGTGCCGGGGTCTACGTGGGA
TGAGGGCTCTTGCCTTCCCTATTTCTCTCGACCGCGCGTTCTCTCCTCTC
GACTCGACGTATTTTTGTAGCTATGTATCAGGGGCCCGTTCGATGGGGTT
TATGGAAAGGATAGGGCGGAGGACGAAGGGAGGAGAGGAGGGAGGGTATC
GCAGAGTCTGGAAGCGGGATGAAGGAGACAGGTGGAGCCGGAGTGTGGGA
TTTTGGAAAGGAAGCAATTGAAGGAGATTAGAGACGAAAAAAAAACAACC
ATATCAACTTAAAATGCAAGAGTAACAGTTCTAGGAAAAAAA
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Coding sequence (CDS) from alignment at scaffold_18:98667..99908+

>mRNA_6531 ID=mRNA_6531|Name=jgi.p|Nanoce1779_2|597268|organism=Nannochloropsis oceanica|type=CDS|length=1035bp|location=Sequence derived from alignment at scaffold_18:98667..99908+ (Nannochloropsis oceanica)
ATGTCCTCTGCATTGACTCGCGCCTTCCGCCGCGTGGCGACCACGCCCAG
GAACGTCCGTCGTTTCGGATCCTCTAACGGCGACCATGGTGCAGAGGAGG
TGGAAAAGTGGCGCAAAGTCTCCATCGCCGCTACGGGCATCGTCGTCCTC
TTTTCGCTCAAAGAGATGGTTGACATGGCCGGAGGCCACCACGGGGCGCA
CAGCGACAAGCCTCTGCCGGACTACATGCAGATCCGCTCGAAGCCCTTTC
CCTGGGAGTGCTCCTCGTGCTCCTTGTTTGACACGGATTGCTTCAAGAAG
TGCAAGGCGGAGAGGGCAGGGGATTTGGTGGAGGACGACCACTAGATGTC
CTCTGCATTGACTCGCGCCTTCCGCCGCGTGGCGACCACGCCCAGGAACG
TCCGTCGTTTCGGATCCTCTAACGGCGACCATGGTGCAGAGGAGGTGGAA
AAGTGGCGCAAAGTCTCCATCGCCGCTACGGGCATCGTCGTCCTCTTTTC
GCTCAAAGAGATGGTTGACATGGCCGGAGGCCACCACGGGGCGCACAGCG
ACAAGCCTCTGCCGGACTACATGCAGATCCGCTCGAAGCCCTTTCCCTGG
GAGTGCTCCTCGTGCTCCTTGTTTGACACGGATTGCTTCAAGAAGTGCAA
GGCGGAGAGGGCAGGGGATTTGGTGGAGGACGACCACTAGATGTCCTCTG
CATTGACTCGCGCCTTCCGCCGCGTGGCGACCACGCCCAGGAACGTCCGT
CGTTTCGGATCCTCTAACGGCGACCATGGTGCAGAGGAGGTGGAAAAGTG
GCGCAAAGTCTCCATCGCCGCTACGGGCATCGTCGTCCTCTTTTCGCTCA
AAGAGATGGTTGACATGGCCGGAGGCCACCACGGGGCGCACAGCGACAAG
CCTCTGCCGGACTACATGCAGATCCGCTCGAAGCCCTTTCCCTGGGAGTG
CTCCTCGTGCTCCTTGTTTGACACGGATTGCTTCAAGAAGTGCAAGGCGG
AGAGGGCAGGGGATTTGGTGGAGGACGACCACTAG
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Synonyms
Publications