jgi.p|Nanoce1779_2|597264, mRNA_6530 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|597264
Unique Name	mRNA_6530
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1613
Alignment location	scaffold_18:96418..98271 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	597350
Track	FilteredModels2
ProteinId	597264

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:96418..98271 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597264	gene_6530	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597264	mRNA_6530-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6530	CDS_6530	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:96418..98271-
coding sequence from alignment at scaffold_18:96418..98271-

mRNA sequence

>mRNA_6530 ID=mRNA_6530|Name=jgi.p|Nanoce1779_2|597264|organism=Nannochloropsis oceanica|type=mRNA|length=1613bp
ACAGGTTTCGCCATGCCGATACGATCTGCGATACTATGCCTTCTTCCCAT
CGTCTTTATAGTCACCACCGCAGTTTTTTTACCTTGCTGTAGCGCGTTTG
CCCCTCTTTTCCATCCCACGTCTAACCCTACTCGTCAGTCAAGACATCGC
GTTGGAAAAGGTCTGTCAATCTCGTCAATACCATTGCACTTCCCCTCCTC
CACAACCCTTGCCGTCGCGAACTTCAATTGGGGAGGGTTCTTAAGTCGCA
AACCCGAACCTCCAAAGGACACCACTCCGGCACCGCTTGACGCCATCTGC
TCCGCCAAAACACAGGCTTTTGGTCGAGGTGCCATGACTGCAGCCACATT
GATTGCGTTTCTCAAGAAATATAGCACGGAAAAGAAGGGACAAACTCTTG
ATCAGCTTGTGGCGTCGGCGGCAGTCGCCTTGCCGAATCAATCCCGTAGA
GCCATGCTTCTCCAAACGTACGATTCGCTTTCTACTTCCACGCAAAAAAG
AAGTATGAACAAATTTTTATCCTCCTCTGCCGTTGCTTCCTTCTCATCCT
CGTCCTCCTCTTCAAAGGCAGGCGGAGCCATATTGGGGGGAAAGTACAGT
CTTCTCAGCACGGGCTCCCAGGGTCCCCGAGTCAGCAGTGGGAAGAGCGC
TGTTGTTGACGCCATTGCTGTCAATAAAAGTCCCAAGAGTATCCTCAAAG
CGAAGTTAAGTCGGAATGTGGTGGCTTTGCGAAGAGAAGCCGACAACCTC
AAGGCCTTGCGGGGAGTGGGGGCTGGGGCAAGGAAGAGCGTGATTGAAGT
CTTTGATTTCTTGGAGAATTACGACGGCCGCGGCAGCCATGCACTGATCA
TGGAGGCAGGGAAAGAGGATCTTGTAGGGAGGGTGAAGAGAGGCGGTGCG
CTGTCGCGGAAGGACTTGAAGAAAGCGTGTGCTGTTGTGGTAGAGGTGTT
GGGAGCACTCGAAAAGAAACAGCTGGTCTGGACTGACCTAAGAGCATCCA
ATTTCGTCGTGATGCCAGCAAAAGGCCTGGGAGATGGACAAATCAAAGCA
ATTGATTTGGAGAGTGCCGTGCCTGTGGGAGAAAGGCCAGTAGATTGTAC
GCCTGAGGTGACACCACCCGAGGTTGCACGTTTATATGTCCAAGGACGGT
TGACGGAGGCTGTGGCGGTGACTAGTTATGACGTGTGGAGCTTGGGAATT
TTGCTCTTGTTTCTGGCATCAGGTGGTAAGAATTTATTCGATGGGGAAGC
ATCGAGTCGCGTGATGGCTTCATTGGCATCGGCGACGCAAGAGAAAGTGG
AAGGGCAGGTAGAGAAGTTGGTGTCGGATGTCAAGATTGCGACATTCATC
AAAACTCTGTTGGTCGTGGACCCAAGGCAGAGACTGGGTGTAGCGGCGAT
CAAAGCAAAGCTTTTCTTCTTCTAGATTGAGAAAGGTATGGGTGATTAGC
CGCTTGCAGTGTATTATAGAGGTGGAAAAGAGGAGTGAGGGCGGCTGGTT
TGGGAACGTACTTATATCTAGGCTGACTCAAGCCACGGATTTTATGACGC
TTGAAGGGATAGGGTACTAGTAAACTTTTAAAAATATGATAGTAATAGCA
CATGAGAACCAAT

protein sequence of jgi.p|Nanoce1779_2|597264

>mRNA_6530-protein ID=mRNA_6530-protein|Name=jgi.p|Nanoce1779_2|597264|organism=Nannochloropsis oceanica|type=polypeptide|length=471bp
MPIRSAILCLLPIVFIVTTAVFLPCCSAFAPLFHPTSNPTRQSRHRVGKG
LSISSIPLHFPSSTTLAVANFNWGGFLSRKPEPPKDTTPAPLDAICSAKT
QAFGRGAMTAATLIAFLKKYSTEKKGQTLDQLVASAAVALPNQSRRAMLL
QTYDSLSTSTQKRSMNKFLSSSAVASFSSSSSSSKAGGAILGGKYSLLST
GSQGPRVSSGKSAVVDAIAVNKSPKSILKAKLSRNVVALRREADNLKALR
GVGAGARKSVIEVFDFLENYDGRGSHALIMEAGKEDLVGRVKRGGALSRK
DLKKACAVVVEVLGALEKKQLVWTDLRASNFVVMPAKGLGDGQIKAIDLE
SAVPVGERPVDCTPEVTPPEVARLYVQGRLTEAVAVTSYDVWSLGILLLF
LASGGKNLFDGEASSRVMASLASATQEKVEGQVEKLVSDVKIATFIKTLL
VVDPRQRLGVAAIKAKLFFF*

mRNA from alignment at scaffold_18:96418..98271-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6530 ID=mRNA_6530|Name=jgi.p|Nanoce1779_2|597264|organism=Nannochloropsis oceanica|type=mRNA|length=1854bp|location=Sequence derived from alignment at scaffold_18:96418..98271- (Nannochloropsis oceanica)
ACAGGTTTCGCCATGCCGATACGATCTGCGATACTATGCCTTCTTCCCAT
CGTCTTTATAGTCACCACCGCAGTTTTTTTACCTTGCTGTAGCGCGTTTG
CCCCTCTTTTCCATCCCACGTCTAACCCTACTCGTCAGTCAAGACATCGC
GTTGGAAAAGGTATGAAGCCAATACCTGCACCTACTCCTAATATACTTTC
TCGCATTGAATTTTCAGCCACCCATCGTACTTGCGTGGTCACTTATCCCT
GCATACATGAGAAAGAGTGGCTACAGCATCGTCCGTTCCGTCCACGTCAT
TTCATTTGGGGACGTATCTGTAAGCCACACACGCTTCTCTAGGGATAAAA
TGAAGTACAATTCACATCCCACGACGAACGACACGTTTACCCTTCAAACA
GGTCTGTCAATCTCGTCAATACCATTGCACTTCCCCTCCTCCACAACCCT
TGCCGTCGCGAACTTCAATTGGGGAGGGTTCTTAAGTCGCAAACCCGAAC
CTCCAAAGGACACCACTCCGGCACCGCTTGACGCCATCTGCTCCGCCAAA
ACACAGGCTTTTGGTCGAGGTGCCATGACTGCAGCCACATTGATTGCGTT
TCTCAAGAAATATAGCACGGAAAAGAAGGGACAAACTCTTGATCAGCTTG
TGGCGTCGGCGGCAGTCGCCTTGCCGAATCAATCCCGTAGAGCCATGCTT
CTCCAAACGTACGATTCGCTTTCTACTTCCACGCAAAAAAGAAGTATGAA
CAAATTTTTATCCTCCTCTGCCGTTGCTTCCTTCTCATCCTCGTCCTCCT
CTTCAAAGGCAGGCGGAGCCATATTGGGGGGAAAGTACAGTCTTCTCAGC
ACGGGCTCCCAGGGTCCCCGAGTCAGCAGTGGGAAGAGCGCTGTTGTTGA
CGCCATTGCTGTCAATAAAAGTCCCAAGAGTATCCTCAAAGCGAAGTTAA
GTCGGAATGTGGTGGCTTTGCGAAGAGAAGCCGACAACCTCAAGGCCTTG
CGGGGAGTGGGGGCTGGGGCAAGGAAGAGCGTGATTGAAGTCTTTGATTT
CTTGGAGAATTACGACGGCCGCGGCAGCCATGCACTGATCATGGAGGCAG
GGAAAGAGGATCTTGTAGGGAGGGTGAAGAGAGGCGGTGCGCTGTCGCGG
AAGGACTTGAAGAAAGCGTGTGCTGTTGTGGTAGAGGTGTTGGGAGCACT
CGAAAAGAAACAGCTGGTCTGGACTGACCTAAGAGCATCCAATTTCGTCG
TGATGCCAGCAAAAGGCCTGGGAGATGGACAAATCAAAGCAATTGATTTG
GAGAGTGCCGTGCCTGTGGGAGAAAGGCCAGTAGATTGTACGCCTGAGGT
GACACCACCCGAGGTTGCACGTTTATATGTCCAAGGACGGTTGACGGAGG
CTGTGGCGGTGACTAGTTATGACGTGTGGAGCTTGGGAATTTTGCTCTTG
TTTCTGGCATCAGGTGGTAAGAATTTATTCGATGGGGAAGCATCGAGTCG
CGTGATGGCTTCATTGGCATCGGCGACGCAAGAGAAAGTGGAAGGGCAGG
TAGAGAAGTTGGTGTCGGATGTCAAGATTGCGACATTCATCAAAACTCTG
TTGGTCGTGGACCCAAGGCAGAGACTGGGTGTAGCGGCGATCAAAGCAAA
GCTTTTCTTCTTCTAGATTGAGAAAGGTATGGGTGATTAGCCGCTTGCAG
TGTATTATAGAGGTGGAAAAGAGGAGTGAGGGCGGCTGGTTTGGGAACGT
ACTTATATCTAGGCTGACTCAAGCCACGGATTTTATGACGCTTGAAGGGA
TAGGGTACTAGTAAACTTTTAAAAATATGATAGTAATAGCACATGAGAAC
CAAT

Coding sequence (CDS) from alignment at scaffold_18:96418..98271-

>mRNA_6530 ID=mRNA_6530|Name=jgi.p|Nanoce1779_2|597264|organism=Nannochloropsis oceanica|type=CDS|length=2826bp|location=Sequence derived from alignment at scaffold_18:96418..98271- (Nannochloropsis oceanica)
GTCTGTCAATCTCGTCAATACCATTGCACTTCCCCTCCTCCACAACCCTT
GCCGTCGCGAACTTCAATTGGGGAGGGTTCTTAAGTCGCAAACCCGAACC
TCCAAAGGACACCACTCCGGCACCGCTTGACGCCATCTGCTCCGCCAAAA
CACAGGCTTTTGGTCGAGGTGCCATGACTGCAGCCACATTGATTGCGTTT
CTCAAGAAATATAGCACGGAAAAGAAGGGACAAACTCTTGATCAGCTTGT
GGCGTCGGCGGCAGTCGCCTTGCCGAATCAATCCCGTAGAGCCATGCTTC
TCCAAACGTACGATTCGCTTTCTACTTCCACGCAAAAAAGAAGTATGAAC
AAATTTTTATCCTCCTCTGCCGTTGCTTCCTTCTCATCCTCGTCCTCCTC
TTCAAAGGCAGGCGGAGCCATATTGGGGGGAAAGTACAGTCTTCTCAGCA
CGGGCTCCCAGGGTCCCCGAGTCAGCAGTGGGAAGAGCGCTGTTGTTGAC
GCCATTGCTGTCAATAAAAGTCCCAAGAGTATCCTCAAAGCGAAGTTAAG
TCGGAATGTGGTGGCTTTGCGAAGAGAAGCCGACAACCTCAAGGCCTTGC
GGGGAGTGGGGGCTGGGGCAAGGAAGAGCGTGATTGAAGTCTTTGATTTC
TTGGAGAATTACGACGGCCGCGGCAGCCATGCACTGATCATGGAGGCAGG
GAAAGAGGATCTTGTAGGGAGGGTGAAGAGAGGCGGTGCGCTGTCGCGGA
AGGACTTGAAGAAAGCGTGTGCTGTTGTGGTAGAGGTGTTGGGAGCACTC
GAAAAGAAACAGCTGGTCTGGACTGACCTAAGAGCATCCAATTTCGTCGT
GATGCCAGCAAAAGGCCTGGGAGATGGACAAATCAAAGCAATTGATTTGG
AGAGTGCCGTGCCTGTGGGAGAAAGGCCAGTAGATTGTACGCCTGAGGTG
ACACCACCCGAGGTTGCACGTTTATATGTCCAAGGACGGTTGACGGAGGC
TGTGGCGGTGACTAGTTATGACGTGTGGAGCTTGGGAATTTTGCTCTTGT
TTCTGGCATCAGGTGGTAAGAATTTATTCGATGGGGAAGCATCGAGTCGC
GTGATGGCTTCATTGGCATCGGCGACGCAAGAGAAAGTGGAAGGGCAGGT
AGAGAAGTTGGTGTCGGATGTCAAGATTGCGACATTCATCAAAACTCTGT
TGGTCGTGGACCCAAGGCAGAGACTGGGTGTAGCGGCGATCAAAGCAAAG
CTTTTCTTCTTCTAGATGCCGATACGATCTGCGATACTATGCCTTCTTCC
CATCGTCTTTATAGTCACCACCGCAGTTTTTTTACCTTGCTGTAGCGCGT
TTGCCCCTCTTTTCCATCCCACGTCTAACCCTACTCGTCAGTCAAGACAT
CGCGTTGGAAAAGGTCTGTCAATCTCGTCAATACCATTGCACTTCCCCTC
CTCCACAACCCTTGCCGTCGCGAACTTCAATTGGGGAGGGTTCTTAAGTC
GCAAACCCGAACCTCCAAAGGACACCACTCCGGCACCGCTTGACGCCATC
TGCTCCGCCAAAACACAGGCTTTTGGTCGAGGTGCCATGACTGCAGCCAC
ATTGATTGCGTTTCTCAAGAAATATAGCACGGAAAAGAAGGGACAAACTC
TTGATCAGCTTGTGGCGTCGGCGGCAGTCGCCTTGCCGAATCAATCCCGT
AGAGCCATGCTTCTCCAAACGTACGATTCGCTTTCTACTTCCACGCAAAA
AAGAAGTATGAACAAATTTTTATCCTCCTCTGCCGTTGCTTCCTTCTCAT
CCTCGTCCTCCTCTTCAAAGGCAGGCGGAGCCATATTGGGGGGAAAGTAC
AGTCTTCTCAGCACGGGCTCCCAGGGTCCCCGAGTCAGCAGTGGGAAGAG
CGCTGTTGTTGACGCCATTGCTGTCAATAAAAGTCCCAAGAGTATCCTCA
AAGCGAAGTTAAGTCGGAATGTGGTGGCTTTGCGAAGAGAAGCCGACAAC
CTCAAGGCCTTGCGGGGAGTGGGGGCTGGGGCAAGGAAGAGCGTGATTGA
AGTCTTTGATTTCTTGGAGAATTACGACGGCCGCGGCAGCCATGCACTGA
TCATGGAGGCAGGGAAAGAGGATCTTGTAGGGAGGGTGAAGAGAGGCGGT
GCGCTGTCGCGGAAGGACTTGAAGAAAGCGTGTGCTGTTGTGGTAGAGGT
GTTGGGAGCACTCGAAAAGAAACAGCTGGTCTGGACTGACCTAAGAGCAT
CCAATTTCGTCGTGATGCCAGCAAAAGGCCTGGGAGATGGACAAATCAAA
GCAATTGATTTGGAGAGTGCCGTGCCTGTGGGAGAAAGGCCAGTAGATTG
TACGCCTGAGGTGACACCACCCGAGGTTGCACGTTTATATGTCCAAGGAC
GGTTGACGGAGGCTGTGGCGGTGACTAGTTATGACGTGTGGAGCTTGGGA
ATTTTGCTCTTGTTTCTGGCATCAGGTGGTAAGAATTTATTCGATGGGGA
AGCATCGAGTCGCGTGATGGCTTCATTGGCATCGGCGACGCAAGAGAAAG
TGGAAGGGCAGGTAGAGAAGTTGGTGTCGGATGTCAAGATTGCGACATTC
ATCAAAACTCTGTTGGTCGTGGACCCAAGGCAGAGACTGGGTGTAGCGGC
GATCAAAGCAAAGCTTTTCTTCTTCTAGATGCCGATACGATCTGCGATAC
TATGCCTTCTTCCCATCGTCTTTATAGTCACCACCGCAGTTTTTTTACCT
TGCTGTAGCGCGTTTGCCCCTCTTTTCCATCCCACGTCTAACCCTACTCG
TCAGTCAAGACATCGCGTTGGAAAAG

Synonyms

Publications