jgi.p|Nanoce1779_2|672436, mRNA_6529 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|672436
Unique Name	mRNA_6529
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2661
Alignment location	scaffold_18:93611..96271 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	672522
Track	FilteredModels2
ProteinId	672436

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:93611..96271 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|672436	gene_6529	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6529	CDS_6529	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|672436	mRNA_6529-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:93611..96271-
coding sequence from alignment at scaffold_18:93611..96271-

mRNA sequence

>mRNA_6529 ID=mRNA_6529|Name=jgi.p|Nanoce1779_2|672436|organism=Nannochloropsis oceanica|type=mRNA|length=2661bp
ACAGGCGCGTCGGAGCGAGCAACAGTATGATCGCCTTATAAACATTTCTT
CCCGCGTTCTATTATCGTCCACGCACCGCCACTTATTTCCGTCGTCGTCC
ACGCACCGCCCCTTATTTCCGAGCATCCTTTCCCCTCACAACTTCCGTCA
ATCATGGCCTCTTCCTCCTCCTCTGTCTTCGCCCATCTCCCCATCCCCCT
GCAAAGAGCGGTCATCGGCCTGATGATGCAGCTCCGACAGTCCGATCAGG
CCCAAATTGCGCAATTCCAAGCGCCTTTGGAGGCGTTGGCGGACGCGGTG
ACCTTGCTCTCCGATGAAGAAGAAGCTGCAGATGCCGTCAGCCTTGTCCT
CCTTCCCGTCTACACCATCTTGACCCTCCCCTCATCCTCCGATACCAAGA
CAAAGACAACTGACAAGGTAACGCCCACATCCCCATCTTTGACATCACTT
CCACAAGTACAAAAGCATCCGCAGCCGCCGCAGCAGCAAGCCCATCGCAC
CCCCGCAGAAGCCAAGGCTCTCGCTGCCGCCTTACGGTGTGTCAGCAGAA
TGGCAAGCAAGTGCGGCTCGAGCGTCATTCGTGATGATCCCTCCATATAC
CTGAAGATTTTGACCCAGTTGGTTATGTCGCTGGCTACATTAAGTAAGGA
GGATTCAACAAAGCGCGTGGAGTGGTGGGTGGAGGAGAAGGCAGTGTTGG
AGGCCTTGCTGGCGTTGTTGCAGTGCTCGCCTCTGCACGGGGACGGAAGA
GGACAGAGAAGAGAAGGAGAAGGAGGGGGAAATAAAAATATAAAAGAGAA
GAAGAGCGACAGGGAGGAGCCGGCGATACCGTCATTAGACGACTACCTCG
ATGACCTCGAGGAGGAGGACGATGACGCGAAGGAGGAAGCAAAGGCAGCA
GCGCTTCACAGACAAATGTTAGCCGAAGCCCATTGGAAGGAAGTGGCGCG
GGCATTAGTTGGAGCTATCAGTGGTGCTATTGTCGCGCAACTTATCCAGG
GTCTGCTGGACGTGATTGCCCGAGATAGGAACAGGGACATGCGTTTGCTC
GCGTTATCTTGTTTGGACAACTTAATCATTCGGTTACTACCCTGTCCTGA
CGTGTGGCGTCCGTTTTTCCCTGGGGTCTTCGGGGGATTGATCAAGGTGG
TGCTAGGGGATTACAAGCAGGGAAGTAGAGTGATGGCTGCTGCCTTGGAG
GTACTGCTGGGGGTCACAGCCATGCTCGCGAATGTGAGGCTCGAAGCCAC
GGAAGGGTTGGGTTGCAACAGCAGAAGTCTGCAGGGGCAGCAGGAGGAGG
TAGAGGGATTATTACCGAATGGAGAAGGAGGTGAAGGAGGAGGGACTGAG
GCCAAGCCTTCCTCTTCGTCGCTCTCCACCTGGCAGCAATTCAAAACCCA
CCTCCTGTCCTCTTCCCCCTCCTCCGCCCCCTCCATCGCCTCCTCCCCCC
CCCCAAAGCACCGGTATGTGTCTATCCCTGTCCCTCCCCAAATCCAAGTC
CACGTCACCATGCAATGGGCGAGGGATCTGCAGAGGCGTCTGTCTGACTA
CCTGCCTGTACTCCTCCGTGCTTGTCTCTCCAGCGAGTCGGTGAAAGTGA
GAGAAGTCTTAATAGACGGATTGGATCGCATGATTGCGGAGAACGATGAC
GAGAAAGGGAGGGAGGAAGGCGGCACGATGAAAAACTTGTTTTTGGTCGA
TTTGGAGGGTGAGGAGGAGGAGAGAAGGAGGGACCAGGGCGTAGCAGCAG
TAGCGGAGTTGTTGAGGGTAAGGGTGTTGGATGCTTTGGTTGCGTTGCGG
GCAGATGATGCACCGACAGTAGAGAGGAAAGCGCAGAGAGTTCTCACTCA
CGTTCTTGGCAATGGTAGCAGCAGCAGCACGAGCAGCAGCAGCACGAGCA
GTAGAGAGAGTCTTGTATCCAGGTCGCGTCTGCTGGATCGCGTGGAGGAG
CTCCTAGAGTGCCTGCCAGCAGTGGCAACAGCAGTGAGCGATGTTGGCCT
GCGGACGACGCTTCGGCTCTTGAAGGGGTACCTTGACTTGTTGTTGGTGG
GTGGGAGGGAGGGAGGGAGGGAGGGGGGGGTGGTGTGTTTGTTGAGGGGG
GAGAAGATGGAGAAGACGATGGGGGCGTTGAAAATGTGCCTGGAGGCGGA
GCGGGGAGGGGGGGGATTGCAGGTTATCGATCCTTTGCCTTCTTTTTTGT
CGGACACGAGAAGAAGGAGGAGGCAGGAGAAGAAACGGGAGGAGGAAGCA
GACGGAGCAGAAGGGGAGGATAATGGGGAGGAAGACGAAGGCGGGAAGAA
GAAGGGCCTTGGTGCGCTCAGACTCGCGGAGCAGCATCCAACGTCATTGC
CTTCCGTCTCTTCTGCCGCTGCTCCCGCGGGTCCGACGTCTTCCTCTACC
TCGTCAAGTCATACACTAGGCTACTACCGTCAATCGTTTCGACACGTTCG
AAGCGAGGCTGTGCTGGAGGACTGCAAGTCCATGCTCCGGTTGTTGGGGC
ATGGAGGAATGAGGAGAAAAAGAAGGGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAAGGGGGGGGGGGGGCGGAAGTGGTTTACCTGGTAGTGAGCTAC
GTGATGAATGA

protein sequence of jgi.p|Nanoce1779_2|672436

>mRNA_6529-protein ID=mRNA_6529-protein|Name=jgi.p|Nanoce1779_2|672436|organism=Nannochloropsis oceanica|type=polypeptide|length=836bp
MASSSSSVFAHLPIPLQRAVIGLMMQLRQSDQAQIAQFQAPLEALADAVT
LLSDEEEAADAVSLVLLPVYTILTLPSSSDTKTKTTDKVTPTSPSLTSLP
QVQKHPQPPQQQAHRTPAEAKALAAALRCVSRMASKCGSSVIRDDPSIYL
KILTQLVMSLATLSKEDSTKRVEWWVEEKAVLEALLALLQCSPLHGDGRG
QRREGEGGGNKNIKEKKSDREEPAIPSLDDYLDDLEEEDDDAKEEAKAAA
LHRQMLAEAHWKEVARALVGAISGAIVAQLIQGLLDVIARDRNRDMRLLA
LSCLDNLIIRLLPCPDVWRPFFPGVFGGLIKVVLGDYKQGSRVMAAALEV
LLGVTAMLANVRLEATEGLGCNSRSLQGQQEEVEGLLPNGEGGEGGGTEA
KPSSSSLSTWQQFKTHLLSSSPSSAPSIASSPPPKHRYVSIPVPPQIQVH
VTMQWARDLQRRLSDYLPVLLRACLSSESVKVREVLIDGLDRMIAENDDE
KGREEGGTMKNLFLVDLEGEEEERRRDQGVAAVAELLRVRVLDALVALRA
DDAPTVERKAQRVLTHVLGNGSSSSTSSSSTSSRESLVSRSRLLDRVEEL
LECLPAVATAVSDVGLRTTLRLLKGYLDLLLVGGREGGREGGVVCLLRGE
KMEKTMGALKMCLEAERGGGGLQVIDPLPSFLSDTRRRRRQEKKREEEAD
GAEGEDNGEEDEGGKKKGLGALRLAEQHPTSLPSVSSAAAPAGPTSSSTS
SSHTLGYYRQSFRHVRSEAVLEDCKSMLRLLGHGGMRRKRRGGGGGGGGG
GGGGGGGGGGGGGGGGGGRGGGGGSGLPGSELRDE*

mRNA from alignment at scaffold_18:93611..96271-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6529 ID=mRNA_6529|Name=jgi.p|Nanoce1779_2|672436|organism=Nannochloropsis oceanica|type=mRNA|length=2661bp|location=Sequence derived from alignment at scaffold_18:93611..96271- (Nannochloropsis oceanica)
ACAGGCGCGTCGGAGCGAGCAACAGTATGATCGCCTTATAAACATTTCTT
CCCGCGTTCTATTATCGTCCACGCACCGCCACTTATTTCCGTCGTCGTCC
ACGCACCGCCCCTTATTTCCGAGCATCCTTTCCCCTCACAACTTCCGTCA
ATCATGGCCTCTTCCTCCTCCTCTGTCTTCGCCCATCTCCCCATCCCCCT
GCAAAGAGCGGTCATCGGCCTGATGATGCAGCTCCGACAGTCCGATCAGG
CCCAAATTGCGCAATTCCAAGCGCCTTTGGAGGCGTTGGCGGACGCGGTG
ACCTTGCTCTCCGATGAAGAAGAAGCTGCAGATGCCGTCAGCCTTGTCCT
CCTTCCCGTCTACACCATCTTGACCCTCCCCTCATCCTCCGATACCAAGA
CAAAGACAACTGACAAGGTAACGCCCACATCCCCATCTTTGACATCACTT
CCACAAGTACAAAAGCATCCGCAGCCGCCGCAGCAGCAAGCCCATCGCAC
CCCCGCAGAAGCCAAGGCTCTCGCTGCCGCCTTACGGTGTGTCAGCAGAA
TGGCAAGCAAGTGCGGCTCGAGCGTCATTCGTGATGATCCCTCCATATAC
CTGAAGATTTTGACCCAGTTGGTTATGTCGCTGGCTACATTAAGTAAGGA
GGATTCAACAAAGCGCGTGGAGTGGTGGGTGGAGGAGAAGGCAGTGTTGG
AGGCCTTGCTGGCGTTGTTGCAGTGCTCGCCTCTGCACGGGGACGGAAGA
GGACAGAGAAGAGAAGGAGAAGGAGGGGGAAATAAAAATATAAAAGAGAA
GAAGAGCGACAGGGAGGAGCCGGCGATACCGTCATTAGACGACTACCTCG
ATGACCTCGAGGAGGAGGACGATGACGCGAAGGAGGAAGCAAAGGCAGCA
GCGCTTCACAGACAAATGTTAGCCGAAGCCCATTGGAAGGAAGTGGCGCG
GGCATTAGTTGGAGCTATCAGTGGTGCTATTGTCGCGCAACTTATCCAGG
GTCTGCTGGACGTGATTGCCCGAGATAGGAACAGGGACATGCGTTTGCTC
GCGTTATCTTGTTTGGACAACTTAATCATTCGGTTACTACCCTGTCCTGA
CGTGTGGCGTCCGTTTTTCCCTGGGGTCTTCGGGGGATTGATCAAGGTGG
TGCTAGGGGATTACAAGCAGGGAAGTAGAGTGATGGCTGCTGCCTTGGAG
GTACTGCTGGGGGTCACAGCCATGCTCGCGAATGTGAGGCTCGAAGCCAC
GGAAGGGTTGGGTTGCAACAGCAGAAGTCTGCAGGGGCAGCAGGAGGAGG
TAGAGGGATTATTACCGAATGGAGAAGGAGGTGAAGGAGGAGGGACTGAG
GCCAAGCCTTCCTCTTCGTCGCTCTCCACCTGGCAGCAATTCAAAACCCA
CCTCCTGTCCTCTTCCCCCTCCTCCGCCCCCTCCATCGCCTCCTCCCCCC
CCCCAAAGCACCGGTATGTGTCTATCCCTGTCCCTCCCCAAATCCAAGTC
CACGTCACCATGCAATGGGCGAGGGATCTGCAGAGGCGTCTGTCTGACTA
CCTGCCTGTACTCCTCCGTGCTTGTCTCTCCAGCGAGTCGGTGAAAGTGA
GAGAAGTCTTAATAGACGGATTGGATCGCATGATTGCGGAGAACGATGAC
GAGAAAGGGAGGGAGGAAGGCGGCACGATGAAAAACTTGTTTTTGGTCGA
TTTGGAGGGTGAGGAGGAGGAGAGAAGGAGGGACCAGGGCGTAGCAGCAG
TAGCGGAGTTGTTGAGGGTAAGGGTGTTGGATGCTTTGGTTGCGTTGCGG
GCAGATGATGCACCGACAGTAGAGAGGAAAGCGCAGAGAGTTCTCACTCA
CGTTCTTGGCAATGGTAGCAGCAGCAGCACGAGCAGCAGCAGCACGAGCA
GTAGAGAGAGTCTTGTATCCAGGTCGCGTCTGCTGGATCGCGTGGAGGAG
CTCCTAGAGTGCCTGCCAGCAGTGGCAACAGCAGTGAGCGATGTTGGCCT
GCGGACGACGCTTCGGCTCTTGAAGGGGTACCTTGACTTGTTGTTGGTGG
GTGGGAGGGAGGGAGGGAGGGAGGGGGGGGTGGTGTGTTTGTTGAGGGGG
GAGAAGATGGAGAAGACGATGGGGGCGTTGAAAATGTGCCTGGAGGCGGA
GCGGGGAGGGGGGGGATTGCAGGTTATCGATCCTTTGCCTTCTTTTTTGT
CGGACACGAGAAGAAGGAGGAGGCAGGAGAAGAAACGGGAGGAGGAAGCA
GACGGAGCAGAAGGGGAGGATAATGGGGAGGAAGACGAAGGCGGGAAGAA
GAAGGGCCTTGGTGCGCTCAGACTCGCGGAGCAGCATCCAACGTCATTGC
CTTCCGTCTCTTCTGCCGCTGCTCCCGCGGGTCCGACGTCTTCCTCTACC
TCGTCAAGTCATACACTAGGCTACTACCGTCAATCGTTTCGACACGTTCG
AAGCGAGGCTGTGCTGGAGGACTGCAAGTCCATGCTCCGGTTGTTGGGGC
ATGGAGGAATGAGGAGAAAAAGAAGGGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAAGGGGGGGGGGGGGCGGAAGTGGTTTACCTGGTAGTGAGCTAC
GTGATGAATGA

Coding sequence (CDS) from alignment at scaffold_18:93611..96271-

>mRNA_6529 ID=mRNA_6529|Name=jgi.p|Nanoce1779_2|672436|organism=Nannochloropsis oceanica|type=CDS|length=2508bp|location=Sequence derived from alignment at scaffold_18:93611..96271- (Nannochloropsis oceanica)
ATGGCCTCTTCCTCCTCCTCTGTCTTCGCCCATCTCCCCATCCCCCTGCA
AAGAGCGGTCATCGGCCTGATGATGCAGCTCCGACAGTCCGATCAGGCCC
AAATTGCGCAATTCCAAGCGCCTTTGGAGGCGTTGGCGGACGCGGTGACC
TTGCTCTCCGATGAAGAAGAAGCTGCAGATGCCGTCAGCCTTGTCCTCCT
TCCCGTCTACACCATCTTGACCCTCCCCTCATCCTCCGATACCAAGACAA
AGACAACTGACAAGGTAACGCCCACATCCCCATCTTTGACATCACTTCCA
CAAGTACAAAAGCATCCGCAGCCGCCGCAGCAGCAAGCCCATCGCACCCC
CGCAGAAGCCAAGGCTCTCGCTGCCGCCTTACGGTGTGTCAGCAGAATGG
CAAGCAAGTGCGGCTCGAGCGTCATTCGTGATGATCCCTCCATATACCTG
AAGATTTTGACCCAGTTGGTTATGTCGCTGGCTACATTAAGTAAGGAGGA
TTCAACAAAGCGCGTGGAGTGGTGGGTGGAGGAGAAGGCAGTGTTGGAGG
CCTTGCTGGCGTTGTTGCAGTGCTCGCCTCTGCACGGGGACGGAAGAGGA
CAGAGAAGAGAAGGAGAAGGAGGGGGAAATAAAAATATAAAAGAGAAGAA
GAGCGACAGGGAGGAGCCGGCGATACCGTCATTAGACGACTACCTCGATG
ACCTCGAGGAGGAGGACGATGACGCGAAGGAGGAAGCAAAGGCAGCAGCG
CTTCACAGACAAATGTTAGCCGAAGCCCATTGGAAGGAAGTGGCGCGGGC
ATTAGTTGGAGCTATCAGTGGTGCTATTGTCGCGCAACTTATCCAGGGTC
TGCTGGACGTGATTGCCCGAGATAGGAACAGGGACATGCGTTTGCTCGCG
TTATCTTGTTTGGACAACTTAATCATTCGGTTACTACCCTGTCCTGACGT
GTGGCGTCCGTTTTTCCCTGGGGTCTTCGGGGGATTGATCAAGGTGGTGC
TAGGGGATTACAAGCAGGGAAGTAGAGTGATGGCTGCTGCCTTGGAGGTA
CTGCTGGGGGTCACAGCCATGCTCGCGAATGTGAGGCTCGAAGCCACGGA
AGGGTTGGGTTGCAACAGCAGAAGTCTGCAGGGGCAGCAGGAGGAGGTAG
AGGGATTATTACCGAATGGAGAAGGAGGTGAAGGAGGAGGGACTGAGGCC
AAGCCTTCCTCTTCGTCGCTCTCCACCTGGCAGCAATTCAAAACCCACCT
CCTGTCCTCTTCCCCCTCCTCCGCCCCCTCCATCGCCTCCTCCCCCCCCC
CAAAGCACCGGTATGTGTCTATCCCTGTCCCTCCCCAAATCCAAGTCCAC
GTCACCATGCAATGGGCGAGGGATCTGCAGAGGCGTCTGTCTGACTACCT
GCCTGTACTCCTCCGTGCTTGTCTCTCCAGCGAGTCGGTGAAAGTGAGAG
AAGTCTTAATAGACGGATTGGATCGCATGATTGCGGAGAACGATGACGAG
AAAGGGAGGGAGGAAGGCGGCACGATGAAAAACTTGTTTTTGGTCGATTT
GGAGGGTGAGGAGGAGGAGAGAAGGAGGGACCAGGGCGTAGCAGCAGTAG
CGGAGTTGTTGAGGGTAAGGGTGTTGGATGCTTTGGTTGCGTTGCGGGCA
GATGATGCACCGACAGTAGAGAGGAAAGCGCAGAGAGTTCTCACTCACGT
TCTTGGCAATGGTAGCAGCAGCAGCACGAGCAGCAGCAGCACGAGCAGTA
GAGAGAGTCTTGTATCCAGGTCGCGTCTGCTGGATCGCGTGGAGGAGCTC
CTAGAGTGCCTGCCAGCAGTGGCAACAGCAGTGAGCGATGTTGGCCTGCG
GACGACGCTTCGGCTCTTGAAGGGGTACCTTGACTTGTTGTTGGTGGGTG
GGAGGGAGGGAGGGAGGGAGGGGGGGGTGGTGTGTTTGTTGAGGGGGGAG
AAGATGGAGAAGACGATGGGGGCGTTGAAAATGTGCCTGGAGGCGGAGCG
GGGAGGGGGGGGATTGCAGGTTATCGATCCTTTGCCTTCTTTTTTGTCGG
ACACGAGAAGAAGGAGGAGGCAGGAGAAGAAACGGGAGGAGGAAGCAGAC
GGAGCAGAAGGGGAGGATAATGGGGAGGAAGACGAAGGCGGGAAGAAGAA
GGGCCTTGGTGCGCTCAGACTCGCGGAGCAGCATCCAACGTCATTGCCTT
CCGTCTCTTCTGCCGCTGCTCCCGCGGGTCCGACGTCTTCCTCTACCTCG
TCAAGTCATACACTAGGCTACTACCGTCAATCGTTTCGACACGTTCGAAG
CGAGGCTGTGCTGGAGGACTGCAAGTCCATGCTCCGGTTGTTGGGGCATG
GAGGAATGAGGAGAAAAAGAAGGGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAAGGGGGGGGGGGGGCGGAAGTGGTTTACCTGGTAGTGAGCTACGTG
ATGAATGA

Synonyms

Publications