jgi.p|Nanoce1779_2|631971, mRNA_6528 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|631971
Unique Name	mRNA_6528
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2819
Alignment location	scaffold_18:90710..93528 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	632057
Track	FilteredModels2
ProteinId	631971

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:90710..93528 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|631971	gene_6528	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|631971	mRNA_6528-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6528	CDS_6528	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:90710..93528-
coding sequence from alignment at scaffold_18:90710..93528-

mRNA sequence

>mRNA_6528 ID=mRNA_6528|Name=jgi.p|Nanoce1779_2|631971|organism=Nannochloropsis oceanica|type=mRNA|length=2819bp
GGGGAGGGGAGGATGCAGTGGGCGCTGGAACGGATACCGTTGGTGTATAT
TATGAACCAGGTCACGCTTGGATGTGGGGAGAGAGAAGAGGAGGAGGAGG
GGGAAGAGGAGAAGGAGGAGGAGCTGAGGGAGGAAGGGGTGGAGGTGGAC
GAAAAGGAGGAGGAGGAAGAAGAGGCCAGGCTTCGAACGTTGGGTGCGGC
GTCCCGTCTCTTCCTAGAGGGAATATTTTTGACGGAAGGGGGTCCTTGGC
ACCTACCCACGGGCCAAGCAGCATCGACAGCAGCAAGGATAGAGGCAGAG
GGAGGGAGACGAGGAGGAGGAGGCGCAGGAGGAGTAGGAGGAGCAGGAGG
AGCAGGAGTGGTGGCAGTGCGTGTTGGGCATGGGGCGACGATAGAGGGAG
GAGGAGGGAGGAAGGGAGGGAGGGATGAGGAGCTGGCTAGGACTCGGGCT
CTACCTGTGGGGGTTTTGGAGAGCAATGCGCGCTTGGTGGCATTGCTAGT
GGAGGGGGTGGGCGATTGTGTGGAGGCCCTTTCGGGTCGTCTGGCGGCTG
TGGCCAGGAGAAGGGAGAAACGGGGGGCGGGAGAGAGGAAAGGAGGGAAG
GGGGTGGAAGCACGTTGGGCGCGAGAGCAGGAGCGATATTTGATGCTGTC
TCTTTATCCGTTGGTGGAAAAACTGGGTGATCCACACCCTCTTGTGCGAC
AAGCAGCTCTCACTACATTGCATCGCTTGGCACGCGCCCACCACCACCAG
CACCAGCAGCAGCAGCACCAGCAGCAACAACATACACAACAAAAGGTGGG
ACAAGAAAAGTCGGATATGATGAAAGCAGAAATTGGCGGTGGAGGAGGGA
GAGGAGGCGAGGTAGGTGCGCTATTAGCCACTAATCTGGATTATTTAGTC
GAAGCCCTCTGTGCGCGGGTCCGTAAATCCCAAGGAAGGGGAGGAAGAAA
AGGAGGAGGAGAAGGTATTTCCTCTTTTCCATTGGCACCGGCGGTGTTGG
AAGCTTTGATAGCAAGGGCAGGCCCAACAGCTTCCTTAGCCTTAGTAAGG
GAACTGGCGCGAGTCGTCCTAGATGTCGTAGACGTGGAAGGATTGACACT
CGGGCCACAATATGTCTATGGAATGATGCGCGCGTTAAGAGTGATGTCTC
AAGCCATACCTTTGCCGGAGGGGGGGAGGGAGGGAAGGGTGAGAAAGGTT
CCCAGGGCCACCAGAGTATCGGCGGCTGTCTATTGGAGAGAAAAGATCTT
GGGGGAGTTTGGGTCTGCAAAAAAGGAGAGGCAGAAGAAGGAGGAGGAGA
AGGGAGGGAAGGAGGGAGTGGTTGAGACGCCAGCGGTGGGGACGGAGGCC
TTTTTCAAGGGGTATCATCGAAAGAAAGAGGATGAGAAGAAGAAGGGAGA
ACAGGCGAGGAGGAAGGAGATGGAAGGCAAGTTGGAGATTGAAAAACTCT
TTCCCGAGGCAGCGGCTGCCTCTGCAACGAAAGAAAATAAAGAGAAGCGT
ACCGAGAATGGCATCTACTATGAGGAAGAGGACGAAGGGGGGCGGGGGCG
AGAGGACGGAGACGACGACGGGGAAGACGACAATCCTACAGTGGAAGAGA
ACCTCATTCTAGAAATAATCGAACGCAGCTGCTACTTCCTCGCCTATCCC
AATCTCTTCATCCAGCACCAGTCCCTCGCCATCCTTCGCCTTTCTCTCCT
CAAGCTCGCTCCTCGTCGAGTCGTCCTCCTTCCCACCGTCCACCGTGTCT
GGCCTGCCATCATGGCACGTCTGCGTGCCTGCGTCATCACCATTAATGGC
CCCACCCGTCGACGTCCCGGGCAACACGAAGAGGATCTCGATCGCTCCGC
TGCTTACTTATTGACAATCGAAGCTTTAGAGATGATCTCGAGCCTCGCCG
GGTTATGTGGAGATTTCTTATCCTTCAAATTCACGGAAGAGCTGTGGCCG
GTGTTGAGAGCGTTGCTTCAAGCCTCGGCGTCGTCAGTGGATGCAGCAGT
AGCTGTCGGTAATAGTAGTGATGGTGATATGGGAAAGCGAGGACAAGGGC
GGGGAGGAAGAGGGGCGGCGTCCTCGTTGCTACTTCCTTCCCCGACGGGA
GGGGGAAGAGGACGGGTTTTGAATCGCGAGAGTTTGGTGGTGGTGGGAAG
AGGACGAGGCACGAACGATAGCTCTTTGGCTCCTGACACGCGGCAGCAAG
AGGTGCCGTCGCCTAGCGCGCTCCTCCTGCAACAACAGCAGCAAGAACAG
GAACGTCTTGCCTTACACCTGCGGGCCGAGATGGCGTTGGTAAGGTGCTT
GCGTCAGTTTATGGAGGCAGAGGATTGTTATCGTTACAGTGTCCCCCTCG
TGCATGTGATCGGGCAGACATGTCTGTTTTTGCTGGGAAGGGTGGAACCA
GAGAGTGAAAGGGGCGGGGAGGTAATGGGACTGTTTGAAGGGCTGGTGCG
TTTGGATGGAGCGGCGTTGTGGCCATTGTTGATGGAGGCAGCGGGATGGG
ATGTGAGTGTGAGGCCGCCGGTGAGGAGAGCAGGGAAGGAGCGTGGGAGG
GTGGGTGGGTGGAGGGGGGAGGTGGAGAGGAGGCGGGCACAGGGGCATGC
GGAGGCGTTGTTGAAGAGGGTGGAAGGCAAAGAGGAGGGAAGGGAGGAGA
TGGCATGGTGTGTCTTGACGGATTGAGTTGGGGACATATGCGTGTTAGAA
TTATTAAAAGGGGGGGGAGAAAGGGGAAATGGCACGATAATTAGTCTCCC
AGGGGCGCCAAAGTCAAATGAATTGCACATCAGGAACCAGTAGAGGAAGA
AAAGAAAGGAAAAGATAAT

protein sequence of jgi.p|Nanoce1779_2|631971

>mRNA_6528-protein ID=mRNA_6528-protein|Name=jgi.p|Nanoce1779_2|631971|organism=Nannochloropsis oceanica|type=polypeptide|length=888bp
MQWALERIPLVYIMNQVTLGCGEREEEEEGEEEKEEELREEGVEVDEKEE
EEEEARLRTLGAASRLFLEGIFLTEGGPWHLPTGQAASTAARIEAEGGRR
GGGGAGGVGGAGGAGVVAVRVGHGATIEGGGGRKGGRDEELARTRALPVG
VLESNARLVALLVEGVGDCVEALSGRLAAVARRREKRGAGERKGGKGVEA
RWAREQERYLMLSLYPLVEKLGDPHPLVRQAALTTLHRLARAHHHQHQQQ
QHQQQQHTQQKVGQEKSDMMKAEIGGGGGRGGEVGALLATNLDYLVEALC
ARVRKSQGRGGRKGGGEGISSFPLAPAVLEALIARAGPTASLALVRELAR
VVLDVVDVEGLTLGPQYVYGMMRALRVMSQAIPLPEGGREGRVRKVPRAT
RVSAAVYWREKILGEFGSAKKERQKKEEEKGGKEGVVETPAVGTEAFFKG
YHRKKEDEKKKGEQARRKEMEGKLEIEKLFPEAAAASATKENKEKRTENG
IYYEEEDEGGRGREDGDDDGEDDNPTVEENLILEIIERSCYFLAYPNLFI
QHQSLAILRLSLLKLAPRRVVLLPTVHRVWPAIMARLRACVITINGPTRR
RPGQHEEDLDRSAAYLLTIEALEMISSLAGLCGDFLSFKFTEELWPVLRA
LLQASASSVDAAVAVGNSSDGDMGKRGQGRGGRGAASSLLLPSPTGGGRG
RVLNRESLVVVGRGRGTNDSSLAPDTRQQEVPSPSALLLQQQQQEQERLA
LHLRAEMALVRCLRQFMEAEDCYRYSVPLVHVIGQTCLFLLGRVEPESER
GGEVMGLFEGLVRLDGAALWPLLMEAAGWDVSVRPPVRRAGKERGRVGGW
RGEVERRRAQGHAEALLKRVEGKEEGREEMAWCVLTD*

mRNA from alignment at scaffold_18:90710..93528-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6528 ID=mRNA_6528|Name=jgi.p|Nanoce1779_2|631971|organism=Nannochloropsis oceanica|type=mRNA|length=2819bp|location=Sequence derived from alignment at scaffold_18:90710..93528- (Nannochloropsis oceanica)
GGGGAGGGGAGGATGCAGTGGGCGCTGGAACGGATACCGTTGGTGTATAT
TATGAACCAGGTCACGCTTGGATGTGGGGAGAGAGAAGAGGAGGAGGAGG
GGGAAGAGGAGAAGGAGGAGGAGCTGAGGGAGGAAGGGGTGGAGGTGGAC
GAAAAGGAGGAGGAGGAAGAAGAGGCCAGGCTTCGAACGTTGGGTGCGGC
GTCCCGTCTCTTCCTAGAGGGAATATTTTTGACGGAAGGGGGTCCTTGGC
ACCTACCCACGGGCCAAGCAGCATCGACAGCAGCAAGGATAGAGGCAGAG
GGAGGGAGACGAGGAGGAGGAGGCGCAGGAGGAGTAGGAGGAGCAGGAGG
AGCAGGAGTGGTGGCAGTGCGTGTTGGGCATGGGGCGACGATAGAGGGAG
GAGGAGGGAGGAAGGGAGGGAGGGATGAGGAGCTGGCTAGGACTCGGGCT
CTACCTGTGGGGGTTTTGGAGAGCAATGCGCGCTTGGTGGCATTGCTAGT
GGAGGGGGTGGGCGATTGTGTGGAGGCCCTTTCGGGTCGTCTGGCGGCTG
TGGCCAGGAGAAGGGAGAAACGGGGGGCGGGAGAGAGGAAAGGAGGGAAG
GGGGTGGAAGCACGTTGGGCGCGAGAGCAGGAGCGATATTTGATGCTGTC
TCTTTATCCGTTGGTGGAAAAACTGGGTGATCCACACCCTCTTGTGCGAC
AAGCAGCTCTCACTACATTGCATCGCTTGGCACGCGCCCACCACCACCAG
CACCAGCAGCAGCAGCACCAGCAGCAACAACATACACAACAAAAGGTGGG
ACAAGAAAAGTCGGATATGATGAAAGCAGAAATTGGCGGTGGAGGAGGGA
GAGGAGGCGAGGTAGGTGCGCTATTAGCCACTAATCTGGATTATTTAGTC
GAAGCCCTCTGTGCGCGGGTCCGTAAATCCCAAGGAAGGGGAGGAAGAAA
AGGAGGAGGAGAAGGTATTTCCTCTTTTCCATTGGCACCGGCGGTGTTGG
AAGCTTTGATAGCAAGGGCAGGCCCAACAGCTTCCTTAGCCTTAGTAAGG
GAACTGGCGCGAGTCGTCCTAGATGTCGTAGACGTGGAAGGATTGACACT
CGGGCCACAATATGTCTATGGAATGATGCGCGCGTTAAGAGTGATGTCTC
AAGCCATACCTTTGCCGGAGGGGGGGAGGGAGGGAAGGGTGAGAAAGGTT
CCCAGGGCCACCAGAGTATCGGCGGCTGTCTATTGGAGAGAAAAGATCTT
GGGGGAGTTTGGGTCTGCAAAAAAGGAGAGGCAGAAGAAGGAGGAGGAGA
AGGGAGGGAAGGAGGGAGTGGTTGAGACGCCAGCGGTGGGGACGGAGGCC
TTTTTCAAGGGGTATCATCGAAAGAAAGAGGATGAGAAGAAGAAGGGAGA
ACAGGCGAGGAGGAAGGAGATGGAAGGCAAGTTGGAGATTGAAAAACTCT
TTCCCGAGGCAGCGGCTGCCTCTGCAACGAAAGAAAATAAAGAGAAGCGT
ACCGAGAATGGCATCTACTATGAGGAAGAGGACGAAGGGGGGCGGGGGCG
AGAGGACGGAGACGACGACGGGGAAGACGACAATCCTACAGTGGAAGAGA
ACCTCATTCTAGAAATAATCGAACGCAGCTGCTACTTCCTCGCCTATCCC
AATCTCTTCATCCAGCACCAGTCCCTCGCCATCCTTCGCCTTTCTCTCCT
CAAGCTCGCTCCTCGTCGAGTCGTCCTCCTTCCCACCGTCCACCGTGTCT
GGCCTGCCATCATGGCACGTCTGCGTGCCTGCGTCATCACCATTAATGGC
CCCACCCGTCGACGTCCCGGGCAACACGAAGAGGATCTCGATCGCTCCGC
TGCTTACTTATTGACAATCGAAGCTTTAGAGATGATCTCGAGCCTCGCCG
GGTTATGTGGAGATTTCTTATCCTTCAAATTCACGGAAGAGCTGTGGCCG
GTGTTGAGAGCGTTGCTTCAAGCCTCGGCGTCGTCAGTGGATGCAGCAGT
AGCTGTCGGTAATAGTAGTGATGGTGATATGGGAAAGCGAGGACAAGGGC
GGGGAGGAAGAGGGGCGGCGTCCTCGTTGCTACTTCCTTCCCCGACGGGA
GGGGGAAGAGGACGGGTTTTGAATCGCGAGAGTTTGGTGGTGGTGGGAAG
AGGACGAGGCACGAACGATAGCTCTTTGGCTCCTGACACGCGGCAGCAAG
AGGTGCCGTCGCCTAGCGCGCTCCTCCTGCAACAACAGCAGCAAGAACAG
GAACGTCTTGCCTTACACCTGCGGGCCGAGATGGCGTTGGTAAGGTGCTT
GCGTCAGTTTATGGAGGCAGAGGATTGTTATCGTTACAGTGTCCCCCTCG
TGCATGTGATCGGGCAGACATGTCTGTTTTTGCTGGGAAGGGTGGAACCA
GAGAGTGAAAGGGGCGGGGAGGTAATGGGACTGTTTGAAGGGCTGGTGCG
TTTGGATGGAGCGGCGTTGTGGCCATTGTTGATGGAGGCAGCGGGATGGG
ATGTGAGTGTGAGGCCGCCGGTGAGGAGAGCAGGGAAGGAGCGTGGGAGG
GTGGGTGGGTGGAGGGGGGAGGTGGAGAGGAGGCGGGCACAGGGGCATGC
GGAGGCGTTGTTGAAGAGGGTGGAAGGCAAAGAGGAGGGAAGGGAGGAGA
TGGCATGGTGTGTCTTGACGGATTGAGTTGGGGACATATGCGTGTTAGAA
TTATTAAAAGGGGGGGGAGAAAGGGGAAATGGCACGATAATTAGTCTCCC
AGGGGCGCCAAAGTCAAATGAATTGCACATCAGGAACCAGTAGAGGAAGA
AAAGAAAGGAAAAGATAAT

Coding sequence (CDS) from alignment at scaffold_18:90710..93528-

>mRNA_6528 ID=mRNA_6528|Name=jgi.p|Nanoce1779_2|631971|organism=Nannochloropsis oceanica|type=CDS|length=2664bp|location=Sequence derived from alignment at scaffold_18:90710..93528- (Nannochloropsis oceanica)
ATGCAGTGGGCGCTGGAACGGATACCGTTGGTGTATATTATGAACCAGGT
CACGCTTGGATGTGGGGAGAGAGAAGAGGAGGAGGAGGGGGAAGAGGAGA
AGGAGGAGGAGCTGAGGGAGGAAGGGGTGGAGGTGGACGAAAAGGAGGAG
GAGGAAGAAGAGGCCAGGCTTCGAACGTTGGGTGCGGCGTCCCGTCTCTT
CCTAGAGGGAATATTTTTGACGGAAGGGGGTCCTTGGCACCTACCCACGG
GCCAAGCAGCATCGACAGCAGCAAGGATAGAGGCAGAGGGAGGGAGACGA
GGAGGAGGAGGCGCAGGAGGAGTAGGAGGAGCAGGAGGAGCAGGAGTGGT
GGCAGTGCGTGTTGGGCATGGGGCGACGATAGAGGGAGGAGGAGGGAGGA
AGGGAGGGAGGGATGAGGAGCTGGCTAGGACTCGGGCTCTACCTGTGGGG
GTTTTGGAGAGCAATGCGCGCTTGGTGGCATTGCTAGTGGAGGGGGTGGG
CGATTGTGTGGAGGCCCTTTCGGGTCGTCTGGCGGCTGTGGCCAGGAGAA
GGGAGAAACGGGGGGCGGGAGAGAGGAAAGGAGGGAAGGGGGTGGAAGCA
CGTTGGGCGCGAGAGCAGGAGCGATATTTGATGCTGTCTCTTTATCCGTT
GGTGGAAAAACTGGGTGATCCACACCCTCTTGTGCGACAAGCAGCTCTCA
CTACATTGCATCGCTTGGCACGCGCCCACCACCACCAGCACCAGCAGCAG
CAGCACCAGCAGCAACAACATACACAACAAAAGGTGGGACAAGAAAAGTC
GGATATGATGAAAGCAGAAATTGGCGGTGGAGGAGGGAGAGGAGGCGAGG
TAGGTGCGCTATTAGCCACTAATCTGGATTATTTAGTCGAAGCCCTCTGT
GCGCGGGTCCGTAAATCCCAAGGAAGGGGAGGAAGAAAAGGAGGAGGAGA
AGGTATTTCCTCTTTTCCATTGGCACCGGCGGTGTTGGAAGCTTTGATAG
CAAGGGCAGGCCCAACAGCTTCCTTAGCCTTAGTAAGGGAACTGGCGCGA
GTCGTCCTAGATGTCGTAGACGTGGAAGGATTGACACTCGGGCCACAATA
TGTCTATGGAATGATGCGCGCGTTAAGAGTGATGTCTCAAGCCATACCTT
TGCCGGAGGGGGGGAGGGAGGGAAGGGTGAGAAAGGTTCCCAGGGCCACC
AGAGTATCGGCGGCTGTCTATTGGAGAGAAAAGATCTTGGGGGAGTTTGG
GTCTGCAAAAAAGGAGAGGCAGAAGAAGGAGGAGGAGAAGGGAGGGAAGG
AGGGAGTGGTTGAGACGCCAGCGGTGGGGACGGAGGCCTTTTTCAAGGGG
TATCATCGAAAGAAAGAGGATGAGAAGAAGAAGGGAGAACAGGCGAGGAG
GAAGGAGATGGAAGGCAAGTTGGAGATTGAAAAACTCTTTCCCGAGGCAG
CGGCTGCCTCTGCAACGAAAGAAAATAAAGAGAAGCGTACCGAGAATGGC
ATCTACTATGAGGAAGAGGACGAAGGGGGGCGGGGGCGAGAGGACGGAGA
CGACGACGGGGAAGACGACAATCCTACAGTGGAAGAGAACCTCATTCTAG
AAATAATCGAACGCAGCTGCTACTTCCTCGCCTATCCCAATCTCTTCATC
CAGCACCAGTCCCTCGCCATCCTTCGCCTTTCTCTCCTCAAGCTCGCTCC
TCGTCGAGTCGTCCTCCTTCCCACCGTCCACCGTGTCTGGCCTGCCATCA
TGGCACGTCTGCGTGCCTGCGTCATCACCATTAATGGCCCCACCCGTCGA
CGTCCCGGGCAACACGAAGAGGATCTCGATCGCTCCGCTGCTTACTTATT
GACAATCGAAGCTTTAGAGATGATCTCGAGCCTCGCCGGGTTATGTGGAG
ATTTCTTATCCTTCAAATTCACGGAAGAGCTGTGGCCGGTGTTGAGAGCG
TTGCTTCAAGCCTCGGCGTCGTCAGTGGATGCAGCAGTAGCTGTCGGTAA
TAGTAGTGATGGTGATATGGGAAAGCGAGGACAAGGGCGGGGAGGAAGAG
GGGCGGCGTCCTCGTTGCTACTTCCTTCCCCGACGGGAGGGGGAAGAGGA
CGGGTTTTGAATCGCGAGAGTTTGGTGGTGGTGGGAAGAGGACGAGGCAC
GAACGATAGCTCTTTGGCTCCTGACACGCGGCAGCAAGAGGTGCCGTCGC
CTAGCGCGCTCCTCCTGCAACAACAGCAGCAAGAACAGGAACGTCTTGCC
TTACACCTGCGGGCCGAGATGGCGTTGGTAAGGTGCTTGCGTCAGTTTAT
GGAGGCAGAGGATTGTTATCGTTACAGTGTCCCCCTCGTGCATGTGATCG
GGCAGACATGTCTGTTTTTGCTGGGAAGGGTGGAACCAGAGAGTGAAAGG
GGCGGGGAGGTAATGGGACTGTTTGAAGGGCTGGTGCGTTTGGATGGAGC
GGCGTTGTGGCCATTGTTGATGGAGGCAGCGGGATGGGATGTGAGTGTGA
GGCCGCCGGTGAGGAGAGCAGGGAAGGAGCGTGGGAGGGTGGGTGGGTGG
AGGGGGGAGGTGGAGAGGAGGCGGGCACAGGGGCATGCGGAGGCGTTGTT
GAAGAGGGTGGAAGGCAAAGAGGAGGGAAGGGAGGAGATGGCATGGTGTG
TCTTGACGGATTGA

Synonyms

Publications