jgi.p|Nanoce1779_2|597257, mRNA_6527 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597257
Unique NamemRNA_6527
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1006
Alignment locationscaffold_18:89661..90666 -

Link to JBrowse

Properties
Property NameValue
TranscriptId597343
TrackFilteredModels2
ProteinId597257
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:89661..90666 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597257gene_6527Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597257mRNA_6527-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6527CDS_6527Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6527 ID=mRNA_6527|Name=jgi.p|Nanoce1779_2|597257|organism=Nannochloropsis oceanica|type=mRNA|length=1006bp
GGCTTGTGTGTCTCTCTATTCTTAGTTGTGTACACACTCATCTTCAAGCG
AATCCACCTTCCTCCTCCTCCATGGCCCCTGCCCAACCCCACCATTCAGT
CAAATCTTGTTCCCTCACTACCCTATCACTATCGCTCGTTGTAATTCCGC
ACCTTCTGTTTCGCTGCCGCCAAGCTCGCTGCGGCGGCTCCTTTCCGACT
TTTCAGTCGGCTGAGAGCGTCTTTTTGCCCCTGTGTTTCTCGTGCCGAGG
CCAATGGTGGATTAAGCAAGCGACGAGTAGTGGAGACCGACGTCGTCGTC
ATTTGTGGCTGCCCGTCGAGGAAAAGGCCTTCGCCCCGTGTATTCGAAGC
CGTAGTAGAAGTGGTAGGATTACGTTGCTGCAGTGCTCTGTGAGGATGTG
GCTTCTTTGTTCGCGCTGGCGGCCCCGTGTGACTGCCTTCCTCCATATCT
TCCCCGTCGTCGTTCCGACCCTGCCAGTCATGCCCATCACCCTCCAACGC
TGGCGCCCACGTCGACAGCTTGTTCAATCGTGCATTCAACTCACTGCTTA
TACCCATCAGTTTATCACATGTCCCAGACAACTTTTTATTCTCCTCCCTC
AACCTTCGGTTCTCCAACAAAAGCATGCCGCCCCATTTCCCCTCTGTCGT
CATTGTCCTGCTCTCCCCATTTCCGCCATCCCCTTCCCCAGCCGCCGTTA
CCCTTCCCACATCCCTGCTCCTCCCAGCATCTATAAACTTCAACCGTTCC
ATCTCATGCCTCATCTCACTAATGGCCGTCCTCAACCTTACGTTCTCCTC
AACTAACGCCCCCTCCTCCAGCAAGTCTCGACCCGCTCCCCCCGTCCTCG
CTGCTGCTGCTGTGGCGGCGGCGTCCGCCTCACGTTTCTCCCTCCTCAAT
TCTTCTTGTAGCCCTTCAGTTTGTGCCCGTAACCTCGCAGCTTCTCCTTC
ACTATTTCTTAATGATGTCTCCAACTCCTCCTCCCTTCCTCCCCTCCCTC
CCTTCC
back to top

protein sequence of jgi.p|Nanoce1779_2|597257

>mRNA_6527-protein ID=mRNA_6527-protein|Name=jgi.p|Nanoce1779_2|597257|organism=Nannochloropsis oceanica|type=polypeptide|length=245bp
MAPAQPHHSVKSCSLTTLSLSLVVIPHLLFRCRQARCGGSFPTFQSAESV
FLPLCFSCRGQWWIKQATSSGDRRRRHLWLPVEEKAFAPCIRSRSRSGRI
TLLQCSVRMWLLCSRWRPRVTAFLHIFPVVVPTLPVMPITLQRWRPRRQL
VQSCIQLTAYTHQFITCPRQLFILLPQPSVLQQKHAAPFPLCRHCPALPI
SAIPFPSRRYPSHIPAPPSIYKLQPFHLMPHLTNGRPQPYVLLN*
back to top

mRNA from alignment at scaffold_18:89661..90666-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6527 ID=mRNA_6527|Name=jgi.p|Nanoce1779_2|597257|organism=Nannochloropsis oceanica|type=mRNA|length=1006bp|location=Sequence derived from alignment at scaffold_18:89661..90666- (Nannochloropsis oceanica)
GGCTTGTGTGTCTCTCTATTCTTAGTTGTGTACACACTCATCTTCAAGCG
AATCCACCTTCCTCCTCCTCCATGGCCCCTGCCCAACCCCACCATTCAGT
CAAATCTTGTTCCCTCACTACCCTATCACTATCGCTCGTTGTAATTCCGC
ACCTTCTGTTTCGCTGCCGCCAAGCTCGCTGCGGCGGCTCCTTTCCGACT
TTTCAGTCGGCTGAGAGCGTCTTTTTGCCCCTGTGTTTCTCGTGCCGAGG
CCAATGGTGGATTAAGCAAGCGACGAGTAGTGGAGACCGACGTCGTCGTC
ATTTGTGGCTGCCCGTCGAGGAAAAGGCCTTCGCCCCGTGTATTCGAAGC
CGTAGTAGAAGTGGTAGGATTACGTTGCTGCAGTGCTCTGTGAGGATGTG
GCTTCTTTGTTCGCGCTGGCGGCCCCGTGTGACTGCCTTCCTCCATATCT
TCCCCGTCGTCGTTCCGACCCTGCCAGTCATGCCCATCACCCTCCAACGC
TGGCGCCCACGTCGACAGCTTGTTCAATCGTGCATTCAACTCACTGCTTA
TACCCATCAGTTTATCACATGTCCCAGACAACTTTTTATTCTCCTCCCTC
AACCTTCGGTTCTCCAACAAAAGCATGCCGCCCCATTTCCCCTCTGTCGT
CATTGTCCTGCTCTCCCCATTTCCGCCATCCCCTTCCCCAGCCGCCGTTA
CCCTTCCCACATCCCTGCTCCTCCCAGCATCTATAAACTTCAACCGTTCC
ATCTCATGCCTCATCTCACTAATGGCCGTCCTCAACCTTACGTTCTCCTC
AACTAACGCCCCCTCCTCCAGCAAGTCTCGACCCGCTCCCCCCGTCCTCG
CTGCTGCTGCTGTGGCGGCGGCGTCCGCCTCACGTTTCTCCCTCCTCAAT
TCTTCTTGTAGCCCTTCAGTTTGTGCCCGTAACCTCGCAGCTTCTCCTTC
ACTATTTCTTAATGATGTCTCCAACTCCTCCTCCCTTCCTCCCCTCCCTC
CCTTCC
back to top

Coding sequence (CDS) from alignment at scaffold_18:89661..90666-

>mRNA_6527 ID=mRNA_6527|Name=jgi.p|Nanoce1779_2|597257|organism=Nannochloropsis oceanica|type=CDS|length=735bp|location=Sequence derived from alignment at scaffold_18:89661..90666- (Nannochloropsis oceanica)
ATGGCCCCTGCCCAACCCCACCATTCAGTCAAATCTTGTTCCCTCACTAC
CCTATCACTATCGCTCGTTGTAATTCCGCACCTTCTGTTTCGCTGCCGCC
AAGCTCGCTGCGGCGGCTCCTTTCCGACTTTTCAGTCGGCTGAGAGCGTC
TTTTTGCCCCTGTGTTTCTCGTGCCGAGGCCAATGGTGGATTAAGCAAGC
GACGAGTAGTGGAGACCGACGTCGTCGTCATTTGTGGCTGCCCGTCGAGG
AAAAGGCCTTCGCCCCGTGTATTCGAAGCCGTAGTAGAAGTGGTAGGATT
ACGTTGCTGCAGTGCTCTGTGAGGATGTGGCTTCTTTGTTCGCGCTGGCG
GCCCCGTGTGACTGCCTTCCTCCATATCTTCCCCGTCGTCGTTCCGACCC
TGCCAGTCATGCCCATCACCCTCCAACGCTGGCGCCCACGTCGACAGCTT
GTTCAATCGTGCATTCAACTCACTGCTTATACCCATCAGTTTATCACATG
TCCCAGACAACTTTTTATTCTCCTCCCTCAACCTTCGGTTCTCCAACAAA
AGCATGCCGCCCCATTTCCCCTCTGTCGTCATTGTCCTGCTCTCCCCATT
TCCGCCATCCCCTTCCCCAGCCGCCGTTACCCTTCCCACATCCCTGCTCC
TCCCAGCATCTATAAACTTCAACCGTTCCATCTCATGCCTCATCTCACTA
ATGGCCGTCCTCAACCTTACGTTCTCCTCAACTAA
back to top
Synonyms
Publications