jgi.p|Nanoce1779_2|121558, mRNA_6526 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|121558
Unique Name	mRNA_6526
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1615
Alignment location	scaffold_18:87783..89711 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	121644
Track	FilteredModels2
ProteinId	121558

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:87783..89711 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|121558	gene_6526	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|121558	mRNA_6526-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6526	CDS_6526	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:87783..89711+
coding sequence from alignment at scaffold_18:87783..89711+

mRNA sequence

>mRNA_6526 ID=mRNA_6526|Name=jgi.p|Nanoce1779_2|121558|organism=Nannochloropsis oceanica|type=mRNA|length=1615bp
ATAGGAGTCTCCCAAGCAAGCAAGGGCTGCCTACCCCTCCTTCCCATTCC
GGCGCCCGGCCAGCCTCCTCCCTCCTTCTCCTTTTCCCACTTCCATGTCC
TCCTCCGCCTCGACGTCGATGTGGCCACGAAGCCACGATGAGCGCGACCG
AAACGACAGTGCGCCCCCCTTTTTTGGCGCTTCGTCCGCCAGCTTGTCGC
CCCTGCGCTCCTCTGTCCATCGTCGCGAGGGAAACTCTTGTTCCGGCACC
TCCTCTTCTCCCTCCCCCCACCAATGGGGCGATCGTAACGCGCCCTTCAT
CGCCTCTTCATCTTCCTCTACCTCCCAGAAGCATCAACAACACCAAGATG
CTGATCCAATATCACCACCACCACCACAAATTCCGCCCACGCACTCCTCC
TTCGCGTCAACCTCCGCCTCGACCGCCACCAACGCACATTATGACTCGTC
TCGCCTCCAGTCGCTCATCATTTCCAAAGAAAAAGAACTCCACGACATTA
ACCATTTCCGGATTCATACCCTCGAATCGCTCCTGAAAGATCGAGACCGC
GCTTTAGCAGAAAATAACGAAAAAATACAGCGTTTAAAAACTGATTTCCA
GTATAACCTCCATCTAATCGAGGAGCGAGATGCGGAGCTCGATCGTGCAG
ACGCTGCTATTGCTTCTCTGCAAGAAACCTTAAGGACGCAGGTCCACGAA
AACGAGGACATGCGACAGGCCTTGACTGAGGCCGAGCAGGCGGGAAGGAG
AAAAGCAGCGCGGATAGAGGCGGAAACGGAAGAGAATTTCGCGCAACGGG
AGCAAGCAGCAGCAGCAGCTGCTGCAGAGAGGGAGAAAAGAATGGAGCAG
GAGTGGATGAGAAGGCATACATCGGAAATGGAGAGCATGAAGAGGGAGTA
TGAAGGGCAGATGTTGGCTAGGGAGGATGGGTGGAGAGCAGTAGAGGAGG
GATTAAGGGGGGAGATATCTAGATTGGAGGAGAGGAAGGCAGCGCTACAG
CGGGCTGTGGCACGAGGGGAGGCACATGAAGTGGCCGCGAGAGAGGTAAA
GGCGAAGCTGGTGGCGGTGGTGGGGGAGAACAAAGAGTTGCGCATGGAGC
TGTCACGGGTGGTGGGACAGAATGAGGAGAAGATGCAGGAGATAGTGGGA
ACGCTTAAGGCGGCAGAGGCAGCCTTTGAGCAGTCGCAAAAGGAAGCAGC
AGTTGAGCAGGCACTGAGAGACAAAGCGCACGAAGAGGCCATGTCGGCGG
CGGTTCAAAAAAAAGAAACTAAGGTGGCCACAGTGAGGGAGAGGTTGCTT
CGAGCGGAGGAGCGGGCAGCAAGGGCGGAGAAAGGGATGAGGGACCTGAG
GAAAGAGATGGAGGAGAGGGTCATGGGCAAGATGAGGGAGGGAGAGGCGG
CTGAATTGCAGCATGCCGAGGAAATAGAGCGGAAGGAAGTGTTAATATTG
GATGTGAAGACATGAAAGAACAGATAGAGCATTTAAGGACTTTGTTGGTG
GAGGAAAGGAAGGAGAGAGAGAGAGAGGTGGCCGCTGCCGTTGCTGCTGC
GCGAGCAGGAGTGGGGAAGGGAGGGAGGGGAGGAAGGGAGGAGGAGTTGG
AGACATCATTAAGAA

protein sequence of jgi.p|Nanoce1779_2|121558

>mRNA_6526-protein ID=mRNA_6526-protein|Name=jgi.p|Nanoce1779_2|121558|organism=Nannochloropsis oceanica|type=polypeptide|length=457bp
MSSSASTSMWPRSHDERDRNDSAPPFFGASSASLSPLRSSVHRREGNSCS
GTSSSPSPHQWGDRNAPFIASSSSSTSQKHQQHQDADPISPPPPQIPPTH
SSFASTSASTATNAHYDSSRLQSLIISKEKELHDINHFRIHTLESLLKDR
DRALAENNEKIQRLKTDFQYNLHLIEERDAELDRADAAIASLQETLRTQV
HENEDMRQALTEAEQAGRRKAARIEAETEENFAQREQAAAAAAAEREKRM
EQEWMRRHTSEMESMKREYEGQMLAREDGWRAVEEGLRGEISRLEERKAA
LQRAVARGEAHEVAAREVKAKLVAVVGENKELRMELSRVVGQNEEKMQEI
VGTLKAAEAAFEQSQKEAAVEQALRDKAHEEAMSAAVQKKETKVATVRER
LLRAEERAARAEKGMRDLRKEMEERVMGKMREGEAAELQHAEEIERKEVL
ILDVKT*

mRNA from alignment at scaffold_18:87783..89711+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6526 ID=mRNA_6526|Name=jgi.p|Nanoce1779_2|121558|organism=Nannochloropsis oceanica|type=mRNA|length=1929bp|location=Sequence derived from alignment at scaffold_18:87783..89711+ (Nannochloropsis oceanica)
ATAGGAGTCTCCCAAGCAAGCAAGGGCTGCCTACCCCTCCTTCCCATTCC
GGCGCCCGGCCAGCCTCCTCCCTCCTTCTCCTTTTCCCACTTCCATGTCC
TCCTCCGCCTCGACGTCGATGTGGCCACGAAGCCACGATGAGCGCGACCG
AAACGACAGTGCGCCCCCCTTTTTTGGCGCTTCGTCCGCCAGCTTGTCGC
CCCTGCGCTCCTCTGTCCATCGTCGCGAGGTGCGAAGTGGAAGAAGTCAG
CCCCTCCTCTTCTCCTTCATTCCTACCCAGCACTCTCTTCCTATGATCAA
AGTCGGCTATGATGATTCTTCCTTCCAAATGCATTGTATGCAGTTTGGTA
TTTGCCTCACCCACCTGTTCATTCTCGGTGTGCTTGCTCAATCCATCTCT
CACCCTCTCTTCCCCTTTCCCTTCCCAACTACCAACACCACGAAAGGGAA
ACTCTTGTTCCGGCACCTCCTCTTCTCCCTCCCCCCACCAATGGGGCGAT
CGTAACGCGCCCTTCATCGCCTCTTCATCTTCCTCTACCTCCCAGAAGCA
TCAACAACACCAAGATGCTGATCCAATATCACCACCACCACCACAAATTC
CGCCCACGCACTCCTCCTTCGCGTCAACCTCCGCCTCGACCGCCACCAAC
GCACATTATGACTCGTCTCGCCTCCAGTCGCTCATCATTTCCAAAGAAAA
AGAACTCCACGACATTAACCATTTCCGGATTCATACCCTCGAATCGCTCC
TGAAAGATCGAGACCGCGCTTTAGCAGAAAATAACGAAAAAATACAGCGT
TTAAAAACTGATTTCCAGTATAACCTCCATCTAATCGAGGAGCGAGATGC
GGAGCTCGATCGTGCAGACGCTGCTATTGCTTCTCTGCAAGAAACCTTAA
GGACGCAGGTCCACGAAAACGAGGACATGCGACAGGCCTTGACTGAGGCC
GAGCAGGCGGGAAGGAGAAAAGCAGCGCGGATAGAGGCGGAAACGGAAGA
GAATTTCGCGCAACGGGAGCAAGCAGCAGCAGCAGCTGCTGCAGAGAGGG
AGAAAAGAATGGAGCAGGAGTGGATGAGAAGGCATACATCGGAAATGGAG
AGCATGAAGAGGGAGTATGAAGGGCAGATGTTGGCTAGGGAGGATGGGTG
GAGAGCAGTAGAGGAGGGATTAAGGGGGGAGATATCTAGATTGGAGGAGA
GGAAGGCAGCGCTACAGCGGGCTGTGGCACGAGGGGAGGCACATGAAGTG
GCCGCGAGAGAGGTAAAGGCGAAGCTGGTGGCGGTGGTGGGGGAGAACAA
AGAGTTGCGCATGGAGCTGTCACGGGTGGTGGGACAGAATGAGGAGAAGA
TGCAGGAGATAGTGGGAACGCTTAAGGCGGCAGAGGCAGCCTTTGAGCAG
TCGCAAAAGGAAGCAGCAGTTGAGCAGGCACTGAGAGACAAAGCGCACGA
AGAGGCCATGTCGGCGGCGGTTCAAAAAAAAGAAACTAAGGTGGCCACAG
TGAGGGAGAGGTTGCTTCGAGCGGAGGAGCGGGCAGCAAGGGCGGAGAAA
GGGATGAGGGACCTGAGGAAAGAGATGGAGGAGAGGGTCATGGGCAAGAT
GAGGGAGGGAGAGGCGGCTGAATTGCAGCATGCCGAGGAAATAGAGCGGA
AGGAAGTGTTAATATTGGATGTGAAGACGTCGTTGTGGGAGGCAGAGGCG
GAGGGAAGGAGGATGACGTTGAGGGTGGGGGAAATGGGCAAGATGATAGA
GGGGAAGGAGAGGGAAATGGGGAAGATGAAAGAACAGATAGAGCATTTAA
GGACTTTGTTGGTGGAGGAAAGGAAGGAGAGAGAGAGAGAGGTGGCCGCT
GCCGTTGCTGCTGCGCGAGCAGGAGTGGGGAAGGGAGGGAGGGGAGGAAG
GGAGGAGGAGTTGGAGACATCATTAAGAA

Coding sequence (CDS) from alignment at scaffold_18:87783..89711+

>mRNA_6526 ID=mRNA_6526|Name=jgi.p|Nanoce1779_2|121558|organism=Nannochloropsis oceanica|type=CDS|length=4113bp|location=Sequence derived from alignment at scaffold_18:87783..89711+ (Nannochloropsis oceanica)
ATGTCCTCCTCCGCCTCGACGTCGATGTGGCCACGAAGCCACGATGAGCG
CGACCGAAACGACAGTGCGCCCCCCTTTTTTGGCGCTTCGTCCGCCAGCT
TGTCGCCCCTGCGCTCCTCTGTCCATCGTCGCGAGGGAAACTCTTGTTCC
GGCACCTCCTCTTCTCCCTCCCCCCACCAATGGGGCGATCGTAACGCGCC
CTTCATCGCCTCTTCATCTTCCTCTACCTCCCAGAAGCATCAACAACACC
AAGATGCTGATCCAATATCACCACCACCACCACAAATTCCGCCCACGCAC
TCCTCCTTCGCGTCAACCTCCGCCTCGACCGCCACCAACGCACATTATGA
CTCGTCTCGCCTCCAGTCGCTCATCATTTCCAAAGAAAAAGAACTCCACG
ACATTAACCATTTCCGGATTCATACCCTCGAATCGCTCCTGAAAGATCGA
GACCGCGCTTTAGCAGAAAATAACGAAAAAATACAGCGTTTAAAAACTGA
TTTCCAGTATAACCTCCATCTAATCGAGGAGCGAGATGCGGAGCTCGATC
GTGCAGACGCTGCTATTGCTTCTCTGCAAGAAACCTTAAGGACGCAGGTC
CACGAAAACGAGGACATGCGACAGGCCTTGACTGAGGCCGAGCAGGCGGG
AAGGAGAAAAGCAGCGCGGATAGAGGCGGAAACGGAAGAGAATTTCGCGC
AACGGGAGCAAGCAGCAGCAGCAGCTGCTGCAGAGAGGGAGAAAAGAATG
GAGCAGGAGTGGATGAGAAGGCATACATCGGAAATGGAGAGCATGAAGAG
GGAGTATGAAGGGCAGATGTTGGCTAGGGAGGATGGGTGGAGAGCAGTAG
AGGAGGGATTAAGGGGGGAGATATCTAGATTGGAGGAGAGGAAGGCAGCG
CTACAGCGGGCTGTGGCACGAGGGGAGGCACATGAAGTGGCCGCGAGAGA
GGTAAAGGCGAAGCTGGTGGCGGTGGTGGGGGAGAACAAAGAGTTGCGCA
TGGAGCTGTCACGGGTGGTGGGACAGAATGAGGAGAAGATGCAGGAGATA
GTGGGAACGCTTAAGGCGGCAGAGGCAGCCTTTGAGCAGTCGCAAAAGGA
AGCAGCAGTTGAGCAGGCACTGAGAGACAAAGCGCACGAAGAGGCCATGT
CGGCGGCGGTTCAAAAAAAAGAAACTAAGGTGGCCACAGTGAGGGAGAGG
TTGCTTCGAGCGGAGGAGCGGGCAGCAAGGGCGGAGAAAGGGATGAGGGA
CCTGAGGAAAGAGATGGAGGAGAGGGTCATGGGCAAGATGAGGGAGGGAG
AGGCGGCTGAATTGCAGCATGCCGAGGAAATAGAGCGGAAGGAAGTGTTA
ATATTGGATGTGAAGACATGAATGTCCTCCTCCGCCTCGACGTCGATGTG
GCCACGAAGCCACGATGAGCGCGACCGAAACGACAGTGCGCCCCCCTTTT
TTGGCGCTTCGTCCGCCAGCTTGTCGCCCCTGCGCTCCTCTGTCCATCGT
CGCGAGGGAAACTCTTGTTCCGGCACCTCCTCTTCTCCCTCCCCCCACCA
ATGGGGCGATCGTAACGCGCCCTTCATCGCCTCTTCATCTTCCTCTACCT
CCCAGAAGCATCAACAACACCAAGATGCTGATCCAATATCACCACCACCA
CCACAAATTCCGCCCACGCACTCCTCCTTCGCGTCAACCTCCGCCTCGAC
CGCCACCAACGCACATTATGACTCGTCTCGCCTCCAGTCGCTCATCATTT
CCAAAGAAAAAGAACTCCACGACATTAACCATTTCCGGATTCATACCCTC
GAATCGCTCCTGAAAGATCGAGACCGCGCTTTAGCAGAAAATAACGAAAA
AATACAGCGTTTAAAAACTGATTTCCAGTATAACCTCCATCTAATCGAGG
AGCGAGATGCGGAGCTCGATCGTGCAGACGCTGCTATTGCTTCTCTGCAA
GAAACCTTAAGGACGCAGGTCCACGAAAACGAGGACATGCGACAGGCCTT
GACTGAGGCCGAGCAGGCGGGAAGGAGAAAAGCAGCGCGGATAGAGGCGG
AAACGGAAGAGAATTTCGCGCAACGGGAGCAAGCAGCAGCAGCAGCTGCT
GCAGAGAGGGAGAAAAGAATGGAGCAGGAGTGGATGAGAAGGCATACATC
GGAAATGGAGAGCATGAAGAGGGAGTATGAAGGGCAGATGTTGGCTAGGG
AGGATGGGTGGAGAGCAGTAGAGGAGGGATTAAGGGGGGAGATATCTAGA
TTGGAGGAGAGGAAGGCAGCGCTACAGCGGGCTGTGGCACGAGGGGAGGC
ACATGAAGTGGCCGCGAGAGAGGTAAAGGCGAAGCTGGTGGCGGTGGTGG
GGGAGAACAAAGAGTTGCGCATGGAGCTGTCACGGGTGGTGGGACAGAAT
GAGGAGAAGATGCAGGAGATAGTGGGAACGCTTAAGGCGGCAGAGGCAGC
CTTTGAGCAGTCGCAAAAGGAAGCAGCAGTTGAGCAGGCACTGAGAGACA
AAGCGCACGAAGAGGCCATGTCGGCGGCGGTTCAAAAAAAAGAAACTAAG
GTGGCCACAGTGAGGGAGAGGTTGCTTCGAGCGGAGGAGCGGGCAGCAAG
GGCGGAGAAAGGGATGAGGGACCTGAGGAAAGAGATGGAGGAGAGGGTCA
TGGGCAAGATGAGGGAGGGAGAGGCGGCTGAATTGCAGCATGCCGAGGAA
ATAGAGCGGAAGGAAGTGTTAATATTGGATGTGAAGACATGAATGTCCTC
CTCCGCCTCGACGTCGATGTGGCCACGAAGCCACGATGAGCGCGACCGAA
ACGACAGTGCGCCCCCCTTTTTTGGCGCTTCGTCCGCCAGCTTGTCGCCC
CTGCGCTCCTCTGTCCATCGTCGCGAGGGAAACTCTTGTTCCGGCACCTC
CTCTTCTCCCTCCCCCCACCAATGGGGCGATCGTAACGCGCCCTTCATCG
CCTCTTCATCTTCCTCTACCTCCCAGAAGCATCAACAACACCAAGATGCT
GATCCAATATCACCACCACCACCACAAATTCCGCCCACGCACTCCTCCTT
CGCGTCAACCTCCGCCTCGACCGCCACCAACGCACATTATGACTCGTCTC
GCCTCCAGTCGCTCATCATTTCCAAAGAAAAAGAACTCCACGACATTAAC
CATTTCCGGATTCATACCCTCGAATCGCTCCTGAAAGATCGAGACCGCGC
TTTAGCAGAAAATAACGAAAAAATACAGCGTTTAAAAACTGATTTCCAGT
ATAACCTCCATCTAATCGAGGAGCGAGATGCGGAGCTCGATCGTGCAGAC
GCTGCTATTGCTTCTCTGCAAGAAACCTTAAGGACGCAGGTCCACGAAAA
CGAGGACATGCGACAGGCCTTGACTGAGGCCGAGCAGGCGGGAAGGAGAA
AAGCAGCGCGGATAGAGGCGGAAACGGAAGAGAATTTCGCGCAACGGGAG
CAAGCAGCAGCAGCAGCTGCTGCAGAGAGGGAGAAAAGAATGGAGCAGGA
GTGGATGAGAAGGCATACATCGGAAATGGAGAGCATGAAGAGGGAGTATG
AAGGGCAGATGTTGGCTAGGGAGGATGGGTGGAGAGCAGTAGAGGAGGGA
TTAAGGGGGGAGATATCTAGATTGGAGGAGAGGAAGGCAGCGCTACAGCG
GGCTGTGGCACGAGGGGAGGCACATGAAGTGGCCGCGAGAGAGGTAAAGG
CGAAGCTGGTGGCGGTGGTGGGGGAGAACAAAGAGTTGCGCATGGAGCTG
TCACGGGTGGTGGGACAGAATGAGGAGAAGATGCAGGAGATAGTGGGAAC
GCTTAAGGCGGCAGAGGCAGCCTTTGAGCAGTCGCAAAAGGAAGCAGCAG
TTGAGCAGGCACTGAGAGACAAAGCGCACGAAGAGGCCATGTCGGCGGCG
GTTCAAAAAAAAGAAACTAAGGTGGCCACAGTGAGGGAGAGGTTGCTTCG
AGCGGAGGAGCGGGCAGCAAGGGCGGAGAAAGGGATGAGGGACCTGAGGA
AAGAGATGGAGGAGAGGGTCATGGGCAAGATGAGGGAGGGAGAGGCGGCT
GAATTGCAGCATGCCGAGGAAATAGAGCGGAAGGAAGTGTTAATATTGGA
TGTGAAGACATGA

Synonyms

Publications