jgi.p|Nanoce1779_2|597252, mRNA_6525 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597252
Unique NamemRNA_6525
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length656
Alignment locationscaffold_18:86014..87067 -

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Properties
Property NameValue
TranscriptId597338
TrackFilteredModels2
ProteinId597252
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:86014..87067 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597252gene_6525Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597252mRNA_6525-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6525CDS_6525Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6525 ID=mRNA_6525|Name=jgi.p|Nanoce1779_2|597252|organism=Nannochloropsis oceanica|type=mRNA|length=656bp
ACAGCAGCAAGCATGCAAATCTTCGTCAAGACCCTGACGGGCAAGACCAT
TACCCTCGATGTCGAGCCCAGCGACACAATCGAGAACGTGAAGCAAAAGA
TTCAGGACAAGGAGGGTATCCCCCCTGACCAGCAGCGACTTATCTTTGCC
GGCAAGCAGTTGGAGGATGGCCGTACGCTCAGCGACTACAACATCCAGAA
GGAATCCACTCTACATTTGGTCCTGCGACTGCGTGGCGGTGGGAAGGTGC
ACGGTTCCTTGGCCCGTGCCGGTAAGGTGAAGGGGCAGACTCCCAAGGTT
GAAAAGCAGGAGAAGCGCAAGAACCCCCGTGGGCGTGCCAAGAAGCGTGT
GCTTTACTCGCGCCGTTTCCTGAACGTGGCCACCGGTGTGGGTGGGAAGC
GATTGGGGCCCAACAGCAATGCGGACAAGATGCAGAAGTAAATGGGTGGT
GTTAAGTGTCCATGTCTGGAGGCTTGAAGGAAGGAGAAGAGGGTGGTGAG
GATCTTTCCTCCCTCGAGGGTGAACAAATGAGACGTTAGAGAGTAGCAAC
ACACACATATACGCACTTGCAGCAGCTGTGAGGAGAGGGTGGAGGGAGGG
TGAGCTCGGATGGGTGCAGGCTAAGAAAGAAGAGAATGACGGGACAACCA
TCAAGA
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protein sequence of jgi.p|Nanoce1779_2|597252

>mRNA_6525-protein ID=mRNA_6525-protein|Name=jgi.p|Nanoce1779_2|597252|organism=Nannochloropsis oceanica|type=polypeptide|length=143bp
MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQL
EDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSLARAGKVKGQTPKVEKQE
KRKNPRGRAKKRVLYSRRFLNVATGVGGKRLGPNSNADKMQK*
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mRNA from alignment at scaffold_18:86014..87067-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6525 ID=mRNA_6525|Name=jgi.p|Nanoce1779_2|597252|organism=Nannochloropsis oceanica|type=mRNA|length=1054bp|location=Sequence derived from alignment at scaffold_18:86014..87067- (Nannochloropsis oceanica)
ACAGCAGCAAGCATGCAAATCTTCGTCAAGACCCTGACGGGCAAGACCAT
TACCCTCGATGTCGAGCCCAGCGACACAATCGAGAACGTGAAGCAAAAGA
TTCAGGACAAGGAGGGTATCCCCCCTGACCAGCAGCGACTTATCTTTGCC
GGCAAGCAGTTGGAGGATGGCCGTACGCTCAGGTGAGGGTTGGACTTTAC
CTAAAGGGAGGGAAGGGGAAGGAGGGAGTTGGAACGAGGGATGATGGGAG
AGGCAATGGATGGCGGGTTGGAGGATGATTGTGACAACAAATTTGGTCAA
GTGAGAAGTAATACGCTTCTACCACATGATTCGTTTCTCAAGTTTTCCGT
ACGAGGGTGACTGAAGAGGCAGTCACAGGCGTCGTGGCATCGTTGGGTGG
GGAGGACGCACAAGTAGGCGACGAGGCACCAGTTGGTGACGAGATCGTGC
TGGTTGCGAGCTTTTGCATATCTAGTCTTTCAAGGGTGCCGGCTGCGTTA
GGTTTTACTGGCATACTTTTCGCATGCTCTCTGTCGGTCCGATACTCACG
CATCGTCCCTCCCTCCCTCCACCCAAACAGCGACTACAACATCCAGAAGG
AATCCACTCTACATTTGGTCCTGCGACTGCGTGGCGGTGGGAAGGTGCAC
GGTTCCTTGGCCCGTGCCGGTAAGGTGAAGGGGCAGACTCCCAAGGTTGA
AAAGCAGGAGAAGCGCAAGAACCCCCGTGGGCGTGCCAAGAAGCGTGTGC
TTTACTCGCGCCGTTTCCTGAACGTGGCCACCGGTGTGGGTGGGAAGCGA
TTGGGGCCCAACAGCAATGCGGACAAGATGCAGAAGTAAATGGGTGGTGT
TAAGTGTCCATGTCTGGAGGCTTGAAGGAAGGAGAAGAGGGTGGTGAGGA
TCTTTCCTCCCTCGAGGGTGAACAAATGAGACGTTAGAGAGTAGCAACAC
ACACATATACGCACTTGCAGCAGCTGTGAGGAGAGGGTGGAGGGAGGGTG
AGCTCGGATGGGTGCAGGCTAAGAAAGAAGAGAATGACGGGACAACCATC
AAGA
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Coding sequence (CDS) from alignment at scaffold_18:86014..87067-

>mRNA_6525 ID=mRNA_6525|Name=jgi.p|Nanoce1779_2|597252|organism=Nannochloropsis oceanica|type=CDS|length=858bp|location=Sequence derived from alignment at scaffold_18:86014..87067- (Nannochloropsis oceanica)
CGACTACAACATCCAGAAGGAATCCACTCTACATTTGGTCCTGCGACTGC
GTGGCGGTGGGAAGGTGCACGGTTCCTTGGCCCGTGCCGGTAAGGTGAAG
GGGCAGACTCCCAAGGTTGAAAAGCAGGAGAAGCGCAAGAACCCCCGTGG
GCGTGCCAAGAAGCGTGTGCTTTACTCGCGCCGTTTCCTGAACGTGGCCA
CCGGTGTGGGTGGGAAGCGATTGGGGCCCAACAGCAATGCGGACAAGATG
CAGAAGTAAATGCAAATCTTCGTCAAGACCCTGACGGGCAAGACCATTAC
CCTCGATGTCGAGCCCAGCGACACAATCGAGAACGTGAAGCAAAAGATTC
AGGACAAGGAGGGTATCCCCCCTGACCAGCAGCGACTTATCTTTGCCGGC
AAGCAGTTGGAGGATGGCCGTACGCTCAGCGACTACAACATCCAGAAGGA
ATCCACTCTACATTTGGTCCTGCGACTGCGTGGCGGTGGGAAGGTGCACG
GTTCCTTGGCCCGTGCCGGTAAGGTGAAGGGGCAGACTCCCAAGGTTGAA
AAGCAGGAGAAGCGCAAGAACCCCCGTGGGCGTGCCAAGAAGCGTGTGCT
TTACTCGCGCCGTTTCCTGAACGTGGCCACCGGTGTGGGTGGGAAGCGAT
TGGGGCCCAACAGCAATGCGGACAAGATGCAGAAGTAAATGCAAATCTTC
GTCAAGACCCTGACGGGCAAGACCATTACCCTCGATGTCGAGCCCAGCGA
CACAATCGAGAACGTGAAGCAAAAGATTCAGGACAAGGAGGGTATCCCCC
CTGACCAGCAGCGACTTATCTTTGCCGGCAAGCAGTTGGAGGATGGCCGT
ACGCTCAG
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Synonyms
Publications