jgi.p|Nanoce1779_2|640827, mRNA_6524 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|640827
Unique Name	mRNA_6524
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1278
Alignment location	scaffold_18:84131..85408 +

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Properties


Property Name	Value
TranscriptId	640913
Track	FilteredModels2
ProteinId	640827

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:84131..85408 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|640827	gene_6524	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|640827	mRNA_6524-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6524	CDS_6524	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:84131..85408+
coding sequence from alignment at scaffold_18:84131..85408+

mRNA sequence

>mRNA_6524 ID=mRNA_6524|Name=jgi.p|Nanoce1779_2|640827|organism=Nannochloropsis oceanica|type=mRNA|length=1278bp
ATGTCGTTACACGATGCTGCCACCTCTGCTGCTGCCGCGCAGGAGGGCAC
CAGACCACCACAACCGGCACAAGATTCAAGAACAGCATCAGCATCAGCTT
CAGCTGATGGCAAAGGAGAAGAATATGAGACGCACCAAAAGCGGCATGCG
GAGGAAGACGACGACGATCAAGGTCAATGGCATTGCACACCACCCTCAGG
GCCCTACCGATCTGCCGGTGTACTAGGACGACGATGCAAGGCGGTCTCTT
CTCTTAAATTCTCCGGCAATGGTCAGCTACTGGCAGCAGCCTCGGCCGAC
ACAACCATAACTATTTGGGACCCCATCAAACGGACGCAAGTCCGTGAGCT
GAAAGGAGGGCACACCCATGGTGTCTCGGACGTAGCCTGGGCCCGCGATA
GCTCCTACCTCGCCACGGGCTCCGACGACAAGACGATTCGAATCTGGGAC
ACAGAGACTGGACAGGAAATGGGGAAAATGCAGGGGCATACAGGGTACGT
GTTTTGCGTTGCATTCAATCCTCAAGGCTCTTTATTGGCTTCGGGCTCTG
AGGACGAAAACGTGAAATTATGGGATTTACGTACCGGTGGGTGCTTAAAG
ACGTTGGAGGCTCATGCGGAGCCGGTCACAGGGGTTGACTTCAATGGAGA
GGGGACTTGCCTAGTCAGTGGGAGTTATGACGGGTTGGTGCGGCTGTGGG
ATGCTGGGATGGGCCAGTGTCTGAAGACCATGTTTGCCGAAGGGAGTCCT
GCGGTTGGTTGTGTGAAGTGGGCACCGAATGGCGAGTACGTGTTGGTGTC
CTCATTGGACTCGATGATCAGGCTTTGGGGGATGAGGAGCCCGAGTCGTG
TGGTGAAGACGTATCAAGGGCATCGAAACGAGAGGTTGTGTATGTCGGCG
GCGTTTGTGTATTTGCAGGGGCAGGGGAAGCACCGACACAAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGT
TTGTGGTGAGTGGATCGGAGGATGGCAAAGTATACTTATGGGATGTACGT
ACTGGGAGGTTCGTGCAGGCCTTAGGAGGGCATAAGGCGGCGGTGTTGAG
CTTGGCTGTTCATCCTTCTCGAGGGGTGCTGGCCTCGGGGGGGACAAGCG
GGGATGGCGTGATCCGGTTGTGGTGCACGAAGGAGGAGGCGCAAGAGGTG
TTGATGGAGCAAAACGGTGGTTGTGGAGGAGGGAGAGAAGGGGGTGGTGT
GGAAATGGAGCTTGACAGTCTAAACTAG

protein sequence of jgi.p|Nanoce1779_2|640827

>mRNA_6524-protein ID=mRNA_6524-protein|Name=jgi.p|Nanoce1779_2|640827|organism=Nannochloropsis oceanica|type=polypeptide|length=426bp
MSLHDAATSAAAAQEGTRPPQPAQDSRTASASASADGKGEEYETHQKRHA
EEDDDDQGQWHCTPPSGPYRSAGVLGRRCKAVSSLKFSGNGQLLAAASAD
TTITIWDPIKRTQVRELKGGHTHGVSDVAWARDSSYLATGSDDKTIRIWD
TETGQEMGKMQGHTGYVFCVAFNPQGSLLASGSEDENVKLWDLRTGGCLK
TLEAHAEPVTGVDFNGEGTCLVSGSYDGLVRLWDAGMGQCLKTMFAEGSP
AVGCVKWAPNGEYVLVSSLDSMIRLWGMRSPSRVVKTYQGHRNERLCMSA
AFVYLQGQGKHRHKQQQQQQQQQQQQQQQQQQQFVVSGSEDGKVYLWDVR
TGRFVQALGGHKAAVLSLAVHPSRGVLASGGTSGDGVIRLWCTKEEAQEV
LMEQNGGCGGGREGGGVEMELDSLN*

mRNA from alignment at scaffold_18:84131..85408+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6524 ID=mRNA_6524|Name=jgi.p|Nanoce1779_2|640827|organism=Nannochloropsis oceanica|type=mRNA|length=1278bp|location=Sequence derived from alignment at scaffold_18:84131..85408+ (Nannochloropsis oceanica)
ATGTCGTTACACGATGCTGCCACCTCTGCTGCTGCCGCGCAGGAGGGCAC
CAGACCACCACAACCGGCACAAGATTCAAGAACAGCATCAGCATCAGCTT
CAGCTGATGGCAAAGGAGAAGAATATGAGACGCACCAAAAGCGGCATGCG
GAGGAAGACGACGACGATCAAGGTCAATGGCATTGCACACCACCCTCAGG
GCCCTACCGATCTGCCGGTGTACTAGGACGACGATGCAAGGCGGTCTCTT
CTCTTAAATTCTCCGGCAATGGTCAGCTACTGGCAGCAGCCTCGGCCGAC
ACAACCATAACTATTTGGGACCCCATCAAACGGACGCAAGTCCGTGAGCT
GAAAGGAGGGCACACCCATGGTGTCTCGGACGTAGCCTGGGCCCGCGATA
GCTCCTACCTCGCCACGGGCTCCGACGACAAGACGATTCGAATCTGGGAC
ACAGAGACTGGACAGGAAATGGGGAAAATGCAGGGGCATACAGGGTACGT
GTTTTGCGTTGCATTCAATCCTCAAGGCTCTTTATTGGCTTCGGGCTCTG
AGGACGAAAACGTGAAATTATGGGATTTACGTACCGGTGGGTGCTTAAAG
ACGTTGGAGGCTCATGCGGAGCCGGTCACAGGGGTTGACTTCAATGGAGA
GGGGACTTGCCTAGTCAGTGGGAGTTATGACGGGTTGGTGCGGCTGTGGG
ATGCTGGGATGGGCCAGTGTCTGAAGACCATGTTTGCCGAAGGGAGTCCT
GCGGTTGGTTGTGTGAAGTGGGCACCGAATGGCGAGTACGTGTTGGTGTC
CTCATTGGACTCGATGATCAGGCTTTGGGGGATGAGGAGCCCGAGTCGTG
TGGTGAAGACGTATCAAGGGCATCGAAACGAGAGGTTGTGTATGTCGGCG
GCGTTTGTGTATTTGCAGGGGCAGGGGAAGCACCGACACAAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGT
TTGTGGTGAGTGGATCGGAGGATGGCAAAGTATACTTATGGGATGTACGT
ACTGGGAGGTTCGTGCAGGCCTTAGGAGGGCATAAGGCGGCGGTGTTGAG
CTTGGCTGTTCATCCTTCTCGAGGGGTGCTGGCCTCGGGGGGGACAAGCG
GGGATGGCGTGATCCGGTTGTGGTGCACGAAGGAGGAGGCGCAAGAGGTG
TTGATGGAGCAAAACGGTGGTTGTGGAGGAGGGAGAGAAGGGGGTGGTGT
GGAAATGGAGCTTGACAGTCTAAACTAG

Coding sequence (CDS) from alignment at scaffold_18:84131..85408+

>mRNA_6524 ID=mRNA_6524|Name=jgi.p|Nanoce1779_2|640827|organism=Nannochloropsis oceanica|type=CDS|length=1278bp|location=Sequence derived from alignment at scaffold_18:84131..85408+ (Nannochloropsis oceanica)
ATGTCGTTACACGATGCTGCCACCTCTGCTGCTGCCGCGCAGGAGGGCAC
CAGACCACCACAACCGGCACAAGATTCAAGAACAGCATCAGCATCAGCTT
CAGCTGATGGCAAAGGAGAAGAATATGAGACGCACCAAAAGCGGCATGCG
GAGGAAGACGACGACGATCAAGGTCAATGGCATTGCACACCACCCTCAGG
GCCCTACCGATCTGCCGGTGTACTAGGACGACGATGCAAGGCGGTCTCTT
CTCTTAAATTCTCCGGCAATGGTCAGCTACTGGCAGCAGCCTCGGCCGAC
ACAACCATAACTATTTGGGACCCCATCAAACGGACGCAAGTCCGTGAGCT
GAAAGGAGGGCACACCCATGGTGTCTCGGACGTAGCCTGGGCCCGCGATA
GCTCCTACCTCGCCACGGGCTCCGACGACAAGACGATTCGAATCTGGGAC
ACAGAGACTGGACAGGAAATGGGGAAAATGCAGGGGCATACAGGGTACGT
GTTTTGCGTTGCATTCAATCCTCAAGGCTCTTTATTGGCTTCGGGCTCTG
AGGACGAAAACGTGAAATTATGGGATTTACGTACCGGTGGGTGCTTAAAG
ACGTTGGAGGCTCATGCGGAGCCGGTCACAGGGGTTGACTTCAATGGAGA
GGGGACTTGCCTAGTCAGTGGGAGTTATGACGGGTTGGTGCGGCTGTGGG
ATGCTGGGATGGGCCAGTGTCTGAAGACCATGTTTGCCGAAGGGAGTCCT
GCGGTTGGTTGTGTGAAGTGGGCACCGAATGGCGAGTACGTGTTGGTGTC
CTCATTGGACTCGATGATCAGGCTTTGGGGGATGAGGAGCCCGAGTCGTG
TGGTGAAGACGTATCAAGGGCATCGAAACGAGAGGTTGTGTATGTCGGCG
GCGTTTGTGTATTTGCAGGGGCAGGGGAAGCACCGACACAAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGT
TTGTGGTGAGTGGATCGGAGGATGGCAAAGTATACTTATGGGATGTACGT
ACTGGGAGGTTCGTGCAGGCCTTAGGAGGGCATAAGGCGGCGGTGTTGAG
CTTGGCTGTTCATCCTTCTCGAGGGGTGCTGGCCTCGGGGGGGACAAGCG
GGGATGGCGTGATCCGGTTGTGGTGCACGAAGGAGGAGGCGCAAGAGGTG
TTGATGGAGCAAAACGGTGGTTGTGGAGGAGGGAGAGAAGGGGGTGGTGT
GGAAATGGAGCTTGACAGTCTAAACTAG

Synonyms

Publications