jgi.p|Nanoce1779_2|597248, mRNA_6523 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597248
Unique NamemRNA_6523
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length556
Alignment locationscaffold_18:82581..83727 -

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Properties
Property NameValue
TranscriptId597334
TrackFilteredModels2
ProteinId597248
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:82581..83727 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597248gene_6523Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597248mRNA_6523-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6523CDS_6523Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6523 ID=mRNA_6523|Name=jgi.p|Nanoce1779_2|597248|organism=Nannochloropsis oceanica|type=mRNA|length=556bp
ACAACAGCCCACCACCTCCCCGTCATCACCATGCTTCGCCAGACGTCTTC
CTTCTTTCTTCTGGTCCTGGCCTTGTTGGCATGCACTGTCACTGCCTTCT
TCCACATCGCAGCGCCCGTGACTCCCGGTCATGTTCTGTTCGCCACTAAG
GCCGAGACGTCTTTGAAGAAGACGGAGCTCTTGGACCAGGTGGTGAAGAA
GACGGGTGTGACCAAGGTCATGGCCGACAAGGTCCTCTCGGCCGTCACTG
ACTCTATCGCTGAGTCCTTGGCTGATGGGAAGAAGGTGTCGCTTGTCGGC
TTTGGGTCCTTTGGCACGTCCGTGAGGTCAGCCCGCACGGCCCGCAACCC
ACGAACTGGCGAGCCCATCCAGGTGCCCGAGACGACTGTGGCCACCTTCG
CGCCCTCCAAGGTGCTCAAGGACAAGGTCAACCACCGCACGCCCGAAAAA
TAGAAGAACAGTCATTACGCAAAAGTTGGAAGACCGGCGGCAGGGGGGAA
GGGAAGGATGGAAGGAAGGATAGAGGGAGGGAATCAGGGAGGGAGGGAAA
GAAGCA
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protein sequence of jgi.p|Nanoce1779_2|597248

>mRNA_6523-protein ID=mRNA_6523-protein|Name=jgi.p|Nanoce1779_2|597248|organism=Nannochloropsis oceanica|type=polypeptide|length=141bp
MLRQTSSFFLLVLALLACTVTAFFHIAAPVTPGHVLFATKAETSLKKTEL
LDQVVKKTGVTKVMADKVLSAVTDSIAESLADGKKVSLVGFGSFGTSVRS
ARTARNPRTGEPIQVPETTVATFAPSKVLKDKVNHRTPEK*
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mRNA from alignment at scaffold_18:82581..83727-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6523 ID=mRNA_6523|Name=jgi.p|Nanoce1779_2|597248|organism=Nannochloropsis oceanica|type=mRNA|length=1147bp|location=Sequence derived from alignment at scaffold_18:82581..83727- (Nannochloropsis oceanica)
ACAACAGCCCACCACCTCCCCGTCATCACCATGCTTCGCCAGACGTCTTC
CTTCTTTCTTCTGGTCCTGGCCTTGTTGGCATGCACTGTCACTGCCTTCT
TCCACATCGCAGCGCCCGTGACTCCCGGTCATGTTCTGTTCGCCACTAAG
GCCGAGACGGTAAGTGTTTGTGGGGAGGTAAGGGGCCGAGGAAGCGAGGG
GTTGGTTGCCCAAGCGGAAGGAGGGGGTTGAGCGTTGAAGGAAACTTCTA
CCTCGTCTTGAGATGCGCTGCCATTTGGTGCTCAGGTTACACACACATCT
CACATCTGTAATATCTGTAGTCTTTGAAGAAGACGGAGCTCTTGGACCAG
GTGGTGAAGAAGACGGGTGTGACCAAGGTCATGGCCGACAAGGTCCTCTC
GGCCGTCACTGACTCTATCGCTGAGTCCTTGGCTGATGGGAAGAAGGGTA
AGAGTAAGGAGAAATACTATGGCTTATTTTTGACATAAGAGACGAGGAGG
AGTGACGTGGCGTGAGTGTGGCTGACTGGCATGCTTGAATTCCTATCCGG
AAACCGAGATATGGCCAGCTCGCCCGTACGAAAGCGACTATGCCTGTGCC
CTCTTCTACCTTCGTTATTCCTCTTGCGTACACGCTTCGGGCTAAATATT
AAATTATTCCTATCCTTGTCCTTTATTAACGTAGTGTCGCTTGTCGGCTT
TGGGTCCTTTGGCACGTCCGTGAGGTCAGCCCGCACGGCCCGCAACCCAC
GAACTGGCGAGCCCATCCAGGTGCCCGAGACGACTGTGGCCACCTTCGCG
CCCTCCAAGGTGCTCAAGGACAAGGTAAAGGACGACCCCAATCTGTCTAT
GTCACCAAATTGATATTGTTGTTTAATTTGCAGTTCTACCCGCGGTTTCT
ATGCGTGCATATTATGTGAATGTGTGTGTCCGGAGGAGATTAATCCTCTC
TTGCCCTCCTCATTCGCCTCCTAAAAACATTCTTCCTCTCGATCTACTTT
TATTTTTTCCGCATAAGGTCAACCACCGCACGCCCGAAAAATAGAAGAAC
AGTCATTACGCAAAAGTTGGAAGACCGGCGGCAGGGGGGAAGGGAAGGAT
GGAAGGAAGGATAGAGGGAGGGAATCAGGGAGGGAGGGAAAGAAGCA
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Coding sequence (CDS) from alignment at scaffold_18:82581..83727-

>mRNA_6523 ID=mRNA_6523|Name=jgi.p|Nanoce1779_2|597248|organism=Nannochloropsis oceanica|type=CDS|length=1692bp|location=Sequence derived from alignment at scaffold_18:82581..83727- (Nannochloropsis oceanica)
GTCAACCACCGCACGCCCGAAAAATAGTGTCGCTTGTCGGCTTTGGGTCC
TTTGGCACGTCCGTGAGGTCAGCCCGCACGGCCCGCAACCCACGAACTGG
CGAGCCCATCCAGGTGCCCGAGACGACTGTGGCCACCTTCGCGCCCTCCA
AGGTGCTCAAGGACAAGTCTTTGAAGAAGACGGAGCTCTTGGACCAGGTG
GTGAAGAAGACGGGTGTGACCAAGGTCATGGCCGACAAGGTCCTCTCGGC
CGTCACTGACTCTATCGCTGAGTCCTTGGCTGATGGGAAGAAGGATGCTT
CGCCAGACGTCTTCCTTCTTTCTTCTGGTCCTGGCCTTGTTGGCATGCAC
TGTCACTGCCTTCTTCCACATCGCAGCGCCCGTGACTCCCGGTCATGTTC
TGTTCGCCACTAAGGCCGAGACGGTCAACCACCGCACGCCCGAAAAATAG
TGTCGCTTGTCGGCTTTGGGTCCTTTGGCACGTCCGTGAGGTCAGCCCGC
ACGGCCCGCAACCCACGAACTGGCGAGCCCATCCAGGTGCCCGAGACGAC
TGTGGCCACCTTCGCGCCCTCCAAGGTGCTCAAGGACAAGTCTTTGAAGA
AGACGGAGCTCTTGGACCAGGTGGTGAAGAAGACGGGTGTGACCAAGGTC
ATGGCCGACAAGGTCCTCTCGGCCGTCACTGACTCTATCGCTGAGTCCTT
GGCTGATGGGAAGAAGGATGCTTCGCCAGACGTCTTCCTTCTTTCTTCTG
GTCCTGGCCTTGTTGGCATGCACTGTCACTGCCTTCTTCCACATCGCAGC
GCCCGTGACTCCCGGTCATGTTCTGTTCGCCACTAAGGCCGAGACGGTCA
ACCACCGCACGCCCGAAAAATAGTGTCGCTTGTCGGCTTTGGGTCCTTTG
GCACGTCCGTGAGGTCAGCCCGCACGGCCCGCAACCCACGAACTGGCGAG
CCCATCCAGGTGCCCGAGACGACTGTGGCCACCTTCGCGCCCTCCAAGGT
GCTCAAGGACAAGTCTTTGAAGAAGACGGAGCTCTTGGACCAGGTGGTGA
AGAAGACGGGTGTGACCAAGGTCATGGCCGACAAGGTCCTCTCGGCCGTC
ACTGACTCTATCGCTGAGTCCTTGGCTGATGGGAAGAAGGATGCTTCGCC
AGACGTCTTCCTTCTTTCTTCTGGTCCTGGCCTTGTTGGCATGCACTGTC
ACTGCCTTCTTCCACATCGCAGCGCCCGTGACTCCCGGTCATGTTCTGTT
CGCCACTAAGGCCGAGACGGTCAACCACCGCACGCCCGAAAAATAGTGTC
GCTTGTCGGCTTTGGGTCCTTTGGCACGTCCGTGAGGTCAGCCCGCACGG
CCCGCAACCCACGAACTGGCGAGCCCATCCAGGTGCCCGAGACGACTGTG
GCCACCTTCGCGCCCTCCAAGGTGCTCAAGGACAAGTCTTTGAAGAAGAC
GGAGCTCTTGGACCAGGTGGTGAAGAAGACGGGTGTGACCAAGGTCATGG
CCGACAAGGTCCTCTCGGCCGTCACTGACTCTATCGCTGAGTCCTTGGCT
GATGGGAAGAAGGATGCTTCGCCAGACGTCTTCCTTCTTTCTTCTGGTCC
TGGCCTTGTTGGCATGCACTGTCACTGCCTTCTTCCACATCGCAGCGCCC
GTGACTCCCGGTCATGTTCTGTTCGCCACTAAGGCCGAGACG
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Synonyms
Publications