jgi.p|Nanoce1779_2|631967, mRNA_6522 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|631967
Unique Name	mRNA_6522
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2245
Alignment location	scaffold_18:79451..82208 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	632053
Track	FilteredModels2
ProteinId	631967

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:79451..82208 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|631967	gene_6522	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|631967	mRNA_6522-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6522	CDS_6522	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:79451..82208+
coding sequence from alignment at scaffold_18:79451..82208+

mRNA sequence

>mRNA_6522 ID=mRNA_6522|Name=jgi.p|Nanoce1779_2|631967|organism=Nannochloropsis oceanica|type=mRNA|length=2245bp
GCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGC
AGGAGCAGGCAGGGTGGAATGGAAGCGATGGATGGATCCGGGCATCATTT
CAAAAATATTTCGAGAATTTTCTGGCTCAGGCCGCCTTGGCCCTGCATAG
CACCATCCGGGATGGCGCCGCTGCTTCTGTTGCTTCTTTATCCTCTTCCT
GGGTGCGGAAAGCTGTGACTGGATTGCTGCAAGCCAACCCCCGAACAACG
TGTGGTTTTGACGTCAAGTTGATGGACTATAATAGGGCATGGGTGGGTCA
GTGGACGACGACTTTAAATTTTAGGATATGGCATGACCATTACCCTCACT
CGTGTTTGCCATCTGATTCTTTCAGCGGCAGCAATAGCATAAGTAGTAGT
AGTAGTAGTAGTAGCAGTGGTAAAAGTAGCAGTAGCAGTAGTAGTAGCGG
TAGCCGTGGTCGTAAGAAGTCGTTGCCTATGTTGCTGGCGTCCGCGTCGT
TTTCGATGTCGGGAGGAGAAGGAGGAGAAGGGAGAGAAGAAGAAGGGGGA
GGGGGAGGGTCGGATGGGGCGGTAGAGTGTTTTACATACCCAAATGGCGA
TACTTATCAAGGTAAGATGCAATCAGGGAAGAGGCAGGGCGTGGGGACAT
ACGTTGAACACGCCACCGGTAACACTTACGAAGGCGATTGGATGAGAGAC
ATGCGGCATGGTCATGGCATTCTTACCACGGGAGCGCGTGATTTTTTGTA
CGATGGAGGGTGGGTGAGGGATAAGAGGGAGGGGCTGGGATGTTGTGTGA
TCCGGGGGCGAGAGACGTATATCGGTGGGTTTGTGGAGAATCGGTACCAG
GGGCAGGGGCAATTGGTGGAATCGGACGGGAGTGTGTATGAAGGGGAATG
GAGGGAGGGAAAAAGGGAGGGGCTAGGGACGTGGAAGAAGGCGGATGGGG
AGGTTTATGTTGGGGAGTGGAAGGAGGGAGGAAGGGAGGGGGTGGGGACG
TGCCAATATTTGGACGGTTCGAAATATTCGGGGGAATGGAAACAAGGAGC
AATTTGTCATGAGGAAGGGGAGGGAAGGGTGGAGGGAGGGAAAGACGGCC
GCCGTCCGAATACACAACGACGGTTGTTGATGGCCGTGAAGGGGCCCCCT
TCTCCGCGAAAGGCGCTTGCAATGCCAGCGACGTCGTTGGAGGAAATTGC
GCGAATGTCGGGCAAGGACTGTGTGGTTGTGTATCCTTGCTCCGGGGATA
CCTATGTTGGTGAAATGAAGGCGGGAAAAAGACATGGCGTAGGGGTGTAC
GTGGAAAAGAAATCCGGGAATAAGTATGAAGGAGGGTTTGAGGAGGATCT
CAGGCATGGACACGGGGTGTTGTCGTCGGGGATGAAGGATTTTCTGTACG
ATGGGGAGTGGGTGCGGGGCCGAAGAACGGGGAAGGGCACATGTGTGGTG
AAGGGAAGGGAGAGTTACACGGGTGAGTGGTTGGATGATGTGTACCACGG
CAAGGGAAGAGTTGTGGATGCTGCGGGTGACACGTACGAGGGGGAGTATA
TGAAGGGACGGAGGGAGGGCGCCGGGACGTTGACGAGTACGGATGGGGAG
GTGTACGTAGGTGAATGGAAGGAGGGAAGGAGGGAGGGGGTGGGTCAGTG
TCAGTATGCGAATGGGGCGTGTTATTCCGGGGATTGGAGGAGGGATAGGT
GGAATGGGGAAGGGGTATTTGTGAGTCCTGAGGGGGAGAAGCATGAAGGA
TTGTGGAGTGAGGGAAGGAGGCAGGGGTGGGGGCTTTGGACGTCGACCAC
GGGGGATGTGATCGAGGGAGAGTGGTTGATGGATGAACCCAAAGATGGGG
AGTGGAAAATAACGTACAGCAATGGCGATCAGTTCGTGGGAACATGCAGG
GAGGGACGGCCGGAGGGGTATGGGATTTGTAAGTACGCGAATGGCGCGGT
GTATTCGGGAGAGTGGAAGGAGGGCGGGAGGGAGGGGCAGGGCAAGTGTG
TCTTTGCAAATGGGGAGATCTATGATGGGGTGTGGGAGAGGGATCACGTG
AGTTTGAGGGGCTTGGGCACACTGAGCTTTCAGGATGGTAGAGTACATGA
GTTTTCATAGACGAGGGGGAGGGAGGGGAAAAGGGAGGAATGGAGGAAAG
CAGGTCTTCCATCATGGACACCTACGTGGCTATTCGATGTGGAGGGAAGG
GAGGGAGGGAGGGAAGGCGGGAAGAAGAATTAGGATTCAAAATAG

protein sequence of jgi.p|Nanoce1779_2|631967

>mRNA_6522-protein ID=mRNA_6522-protein|Name=jgi.p|Nanoce1779_2|631967|organism=Nannochloropsis oceanica|type=polypeptide|length=613bp
MDYNRAWVGQWTTTLNFRIWHDHYPHSCLPSDSFSGSNSISSSSSSSSSG
KSSSSSSSSGSRGRKKSLPMLLASASFSMSGGEGGEGREEEGGGGGSDGA
VECFTYPNGDTYQGKMQSGKRQGVGTYVEHATGNTYEGDWMRDMRHGHGI
LTTGARDFLYDGGWVRDKREGLGCCVIRGRETYIGGFVENRYQGQGQLVE
SDGSVYEGEWREGKREGLGTWKKADGEVYVGEWKEGGREGVGTCQYLDGS
KYSGEWKQGAICHEEGEGRVEGGKDGRRPNTQRRLLMAVKGPPSPRKALA
MPATSLEEIARMSGKDCVVVYPCSGDTYVGEMKAGKRHGVGVYVEKKSGN
KYEGGFEEDLRHGHGVLSSGMKDFLYDGEWVRGRRTGKGTCVVKGRESYT
GEWLDDVYHGKGRVVDAAGDTYEGEYMKGRREGAGTLTSTDGEVYVGEWK
EGRREGVGQCQYANGACYSGDWRRDRWNGEGVFVSPEGEKHEGLWSEGRR
QGWGLWTSTTGDVIEGEWLMDEPKDGEWKITYSNGDQFVGTCREGRPEGY
GICKYANGAVYSGEWKEGGREGQGKCVFANGEIYDGVWERDHVSLRGLGT
LSFQDGRVHEFS*

mRNA from alignment at scaffold_18:79451..82208+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6522 ID=mRNA_6522|Name=jgi.p|Nanoce1779_2|631967|organism=Nannochloropsis oceanica|type=mRNA|length=2758bp|location=Sequence derived from alignment at scaffold_18:79451..82208+ (Nannochloropsis oceanica)
GCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGC
AGGAGCAGGCAGGGTGGAATGGAAGCGATGGATGGATCCGGGCATCATTT
CAAAAATATTTCGAGAATTTTCTGGCTCAGGCCGCCTTGGCCCTGCATAG
CACCATCCGGGATGGCGCCGCTGCTTCTGTTGCTTCTTTATCCTCTTCCT
GGGTGCGGAAAGCTGTGACTGGATTGCTGCAAGCCAACCCCCGAACAACG
TGTGGTTTTGACGTCAAGTTGATGGACTATAATAGGGCATGGGTGGGTCA
GTGGACGACGACTTTAAATTTTAGGATATGGCATGACCATTACCCTCACT
CGTGTTTGCCATCTGATTCTTTCAGCGGCAGCAATAGCATAAGTAGTAGT
AGTAGTAGTAGTAGCAGTGGTAAAAGTAGCAGTAGCAGTAGTAGTAGCGG
TAGCCGTGGTCGTAAGAAGTCGTTGCCTATGTTGCTGGCGTCCGCGTCGT
TTTCGATGTCGGGAGGAGAAGGAGGAGAAGGGAGAGAAGAAGAAGGGGGA
GGGGGAGGGTCGGATGGGGCGGTAGAGTGTTTTACATACCCAAATGGCGA
TACTTATCAAGGTAAGATGCAATCAGGGAAGAGGCAGGGCGTGGGGACAT
ACGTTGAACACGCCACCGGTAACACTTACGAAGGCGATTGGATGAGAGAC
ATGCGGCATGGTCATGGCATTCTTACCACGGGAGCGCGTGATTTTTTGTA
CGATGGAGGGTGGGTGAGGGATAAGAGGGAGGGGCTGGGATGTTGTGTGA
TCCGGGGGCGAGAGACGTATATCGGTGGGTTTGTGGAGAATCGGTACCAG
GGGCAGGGGCAATTGGTGGAATCGGACGGGAGTGTGTATGAAGGGGAATG
GAGGGAGGGAAAAAGGGAGGGGCTAGGGACGTGGAAGAAGGCGGATGGGG
AGGTTTATGTTGGGGAGTGGAAGGAGGGAGGAAGGGAGGGGGTGGGGACG
TGCCAATATTTGGACGGTTCGAAATATTCGGGGGAATGGAAACAAGGAGG
TCGGTGCGGGGAAGGAACGTTTGTTGCTGCTCCTGCTGTAGCAATGGCAG
CAGCAGCCGGAGCAGCACCAGACAGAGAAGGAGGAGGAGGAGAAGGAGGT
GGCGGCGGAGGGATGGATGCTGCTACTGCTTCCACTACCGGTCTTGCTGC
TGTCACAGAAGATTTTTTTGAAGGTCAGTGGGTAGCGGACCAGAGGCATG
GATGGGGTGTGCAGAAGTTTGTTAATGGTGACATCAAAGAGGGGGAATGG
CACCAAGATAAGCCACAGGACGGGGAATGGAAGATAACGTATGCGTCGGG
CGATCAATTTGTGGGGGAATGCAAGGCGGGGAAGCCGCATGGGCTTGGGA
CGTGTAAATATTCGAATGGCGACGTTTATACAGGGGAATGGGAGGGGGGT
TTGAGGGCGGGGGAGGGTGTGTGTGTCTTTGCCCGGGCATCGGGGAAGGA
GAGGATTGAAGGACGCTGGTGGGGGGATCGTCCGGTGGTAGGTGATTTTG
ATTGTACTCCAGCAATTTGTCATGAGGAAGGGGAGGGAAGGGTGGAGGGA
GGGAAAGACGGCCGCCGTCCGAATACACAACGACGGTTGTTGATGGCCGT
GAAGGGGCCCCCTTCTCCGCGAAAGGCGCTTGCAATGCCAGCGACGTCGT
TGGAGGAAATTGCGCGAATGTCGGGCAAGGACTGTGTGGTTGTGTATCCT
TGCTCCGGGGATACCTATGTTGGTGAAATGAAGGCGGGAAAAAGACATGG
CGTAGGGGTGTACGTGGAAAAGAAATCCGGGAATAAGTATGAAGGAGGGT
TTGAGGAGGATCTCAGGCATGGACACGGGGTGTTGTCGTCGGGGATGAAG
GATTTTCTGTACGATGGGGAGTGGGTGCGGGGCCGAAGAACGGGGAAGGG
CACATGTGTGGTGAAGGGAAGGGAGAGTTACACGGGTGAGTGGTTGGATG
ATGTGTACCACGGCAAGGGAAGAGTTGTGGATGCTGCGGGTGACACGTAC
GAGGGGGAGTATATGAAGGGACGGAGGGAGGGCGCCGGGACGTTGACGAG
TACGGATGGGGAGGTGTACGTAGGTGAATGGAAGGAGGGAAGGAGGGAGG
GGGTGGGTCAGTGTCAGTATGCGAATGGGGCGTGTTATTCCGGGGATTGG
AGGAGGGATAGGTGGAATGGGGAAGGGGTATTTGTGAGTCCTGAGGGGGA
GAAGCATGAAGGATTGTGGAGTGAGGGAAGGAGGCAGGGGTGGGGGCTTT
GGACGTCGACCACGGGGGATGTGATCGAGGGAGAGTGGTTGATGGATGAA
CCCAAAGATGGGGAGTGGAAAATAACGTACAGCAATGGCGATCAGTTCGT
GGGAACATGCAGGGAGGGACGGCCGGAGGGGTATGGGATTTGTAAGTACG
CGAATGGCGCGGTGTATTCGGGAGAGTGGAAGGAGGGCGGGAGGGAGGGG
CAGGGCAAGTGTGTCTTTGCAAATGGGGAGATCTATGATGGGGTGTGGGA
GAGGGATCACGTGAGTTTGAGGGGCTTGGGCACACTGAGCTTTCAGGATG
GTAGAGTACATGAGTTTTCATAGACGAGGGGGAGGGAGGGGAAAAGGGAG
GAATGGAGGAAAGCAGGTCTTCCATCATGGACACCTACGTGGCTATTCGA
TGTGGAGGGAAGGGAGGGAGGGAGGGAAGGCGGGAAGAAGAATTAGGATT
CAAAATAG

Coding sequence (CDS) from alignment at scaffold_18:79451..82208+

>mRNA_6522 ID=mRNA_6522|Name=jgi.p|Nanoce1779_2|631967|organism=Nannochloropsis oceanica|type=CDS|length=3678bp|location=Sequence derived from alignment at scaffold_18:79451..82208+ (Nannochloropsis oceanica)
ATGGACTATAATAGGGCATGGGTGGGTCAGTGGACGACGACTTTAAATTT
TAGGATATGGCATGACCATTACCCTCACTCGTGTTTGCCATCTGATTCTT
TCAGCGGCAGCAATAGCATAAGTAGTAGTAGTAGTAGTAGTAGCAGTGGT
AAAAGTAGCAGTAGCAGTAGTAGTAGCGGTAGCCGTGGTCGTAAGAAGTC
GTTGCCTATGTTGCTGGCGTCCGCGTCGTTTTCGATGTCGGGAGGAGAAG
GAGGAGAAGGGAGAGAAGAAGAAGGGGGAGGGGGAGGGTCGGATGGGGCG
GTAGAGTGTTTTACATACCCAAATGGCGATACTTATCAAGGTAAGATGCA
ATCAGGGAAGAGGCAGGGCGTGGGGACATACGTTGAACACGCCACCGGTA
ACACTTACGAAGGCGATTGGATGAGAGACATGCGGCATGGTCATGGCATT
CTTACCACGGGAGCGCGTGATTTTTTGTACGATGGAGGGTGGGTGAGGGA
TAAGAGGGAGGGGCTGGGATGTTGTGTGATCCGGGGGCGAGAGACGTATA
TCGGTGGGTTTGTGGAGAATCGGTACCAGGGGCAGGGGCAATTGGTGGAA
TCGGACGGGAGTGTGTATGAAGGGGAATGGAGGGAGGGAAAAAGGGAGGG
GCTAGGGACGTGGAAGAAGGCGGATGGGGAGGTTTATGTTGGGGAGTGGA
AGGAGGGAGGAAGGGAGGGGGTGGGGACGTGCCAATATTTGGACGGTTCG
AAATATTCGGGGGAATGGAAACAAGGAGCAATTTGTCATGAGGAAGGGGA
GGGAAGGGTGGAGGGAGGGAAAGACGGCCGCCGTCCGAATACACAACGAC
GGTTGTTGATGGCCGTGAAGGGGCCCCCTTCTCCGCGAAAGGCGCTTGCA
ATGCCAGCGACGTCGTTGGAGGAAATTGCGCGAATGTCGGGCAAGGACTG
TGTGGTTGTGTATCCTTGCTCCGGGGATACCTATGTTGGTGAAATGAAGG
CGGGAAAAAGACATGGCGTAGGGGTGTACGTGGAAAAGAAATCCGGGAAT
AAGTATGAAGGAGGGTTTGAGGAGGATCTCAGGCATGGACACGGGGTGTT
GTCGTCGGGGATGAAGGATTTTCTGTACGATGGGGAGTGGGTGCGGGGCC
GAAGAACGGGGAAGGGCACATGTGTGGTGAAGGGAAGGGAGAGTTACACG
GGTGAGTGGTTGGATGATGTGTACCACGGCAAGGGAAGAGTTGTGGATGC
TGCGGGTGACACGTACGAGGGGGAGTATATGAAGGGACGGAGGGAGGGCG
CCGGGACGTTGACGAGTACGGATGGGGAGGTGTACGTAGGTGAATGGAAG
GAGGGAAGGAGGGAGGGGGTGGGTCAGTGTCAGTATGCGAATGGGGCGTG
TTATTCCGGGGATTGGAGGAGGGATAGGTGGAATGGGGAAGGGGTATTTG
TGAGTCCTGAGGGGGAGAAGCATGAAGGATTGTGGAGTGAGGGAAGGAGG
CAGGGGTGGGGGCTTTGGACGTCGACCACGGGGGATGTGATCGAGGGAGA
GTGGTTGATGGATGAACCCAAAGATGGGGAGTGGAAAATAACGTACAGCA
ATGGCGATCAGTTCGTGGGAACATGCAGGGAGGGACGGCCGGAGGGGTAT
GGGATTTGTAAGTACGCGAATGGCGCGGTGTATTCGGGAGAGTGGAAGGA
GGGCGGGAGGGAGGGGCAGGGCAAGTGTGTCTTTGCAAATGGGGAGATCT
ATGATGGGGTGTGGGAGAGGGATCACGTGAGTTTGAGGGGCTTGGGCACA
CTGAGCTTTCAGGATGGTAGAGTACATGAGTTTTCATAGATGGACTATAA
TAGGGCATGGGTGGGTCAGTGGACGACGACTTTAAATTTTAGGATATGGC
ATGACCATTACCCTCACTCGTGTTTGCCATCTGATTCTTTCAGCGGCAGC
AATAGCATAAGTAGTAGTAGTAGTAGTAGTAGCAGTGGTAAAAGTAGCAG
TAGCAGTAGTAGTAGCGGTAGCCGTGGTCGTAAGAAGTCGTTGCCTATGT
TGCTGGCGTCCGCGTCGTTTTCGATGTCGGGAGGAGAAGGAGGAGAAGGG
AGAGAAGAAGAAGGGGGAGGGGGAGGGTCGGATGGGGCGGTAGAGTGTTT
TACATACCCAAATGGCGATACTTATCAAGGTAAGATGCAATCAGGGAAGA
GGCAGGGCGTGGGGACATACGTTGAACACGCCACCGGTAACACTTACGAA
GGCGATTGGATGAGAGACATGCGGCATGGTCATGGCATTCTTACCACGGG
AGCGCGTGATTTTTTGTACGATGGAGGGTGGGTGAGGGATAAGAGGGAGG
GGCTGGGATGTTGTGTGATCCGGGGGCGAGAGACGTATATCGGTGGGTTT
GTGGAGAATCGGTACCAGGGGCAGGGGCAATTGGTGGAATCGGACGGGAG
TGTGTATGAAGGGGAATGGAGGGAGGGAAAAAGGGAGGGGCTAGGGACGT
GGAAGAAGGCGGATGGGGAGGTTTATGTTGGGGAGTGGAAGGAGGGAGGA
AGGGAGGGGGTGGGGACGTGCCAATATTTGGACGGTTCGAAATATTCGGG
GGAATGGAAACAAGGAGCAATTTGTCATGAGGAAGGGGAGGGAAGGGTGG
AGGGAGGGAAAGACGGCCGCCGTCCGAATACACAACGACGGTTGTTGATG
GCCGTGAAGGGGCCCCCTTCTCCGCGAAAGGCGCTTGCAATGCCAGCGAC
GTCGTTGGAGGAAATTGCGCGAATGTCGGGCAAGGACTGTGTGGTTGTGT
ATCCTTGCTCCGGGGATACCTATGTTGGTGAAATGAAGGCGGGAAAAAGA
CATGGCGTAGGGGTGTACGTGGAAAAGAAATCCGGGAATAAGTATGAAGG
AGGGTTTGAGGAGGATCTCAGGCATGGACACGGGGTGTTGTCGTCGGGGA
TGAAGGATTTTCTGTACGATGGGGAGTGGGTGCGGGGCCGAAGAACGGGG
AAGGGCACATGTGTGGTGAAGGGAAGGGAGAGTTACACGGGTGAGTGGTT
GGATGATGTGTACCACGGCAAGGGAAGAGTTGTGGATGCTGCGGGTGACA
CGTACGAGGGGGAGTATATGAAGGGACGGAGGGAGGGCGCCGGGACGTTG
ACGAGTACGGATGGGGAGGTGTACGTAGGTGAATGGAAGGAGGGAAGGAG
GGAGGGGGTGGGTCAGTGTCAGTATGCGAATGGGGCGTGTTATTCCGGGG
ATTGGAGGAGGGATAGGTGGAATGGGGAAGGGGTATTTGTGAGTCCTGAG
GGGGAGAAGCATGAAGGATTGTGGAGTGAGGGAAGGAGGCAGGGGTGGGG
GCTTTGGACGTCGACCACGGGGGATGTGATCGAGGGAGAGTGGTTGATGG
ATGAACCCAAAGATGGGGAGTGGAAAATAACGTACAGCAATGGCGATCAG
TTCGTGGGAACATGCAGGGAGGGACGGCCGGAGGGGTATGGGATTTGTAA
GTACGCGAATGGCGCGGTGTATTCGGGAGAGTGGAAGGAGGGCGGGAGGG
AGGGGCAGGGCAAGTGTGTCTTTGCAAATGGGGAGATCTATGATGGGGTG
TGGGAGAGGGATCACGTGAGTTTGAGGGGCTTGGGCACACTGAGCTTTCA
GGATGGTAGAGTACATGAGTTTTCATAG

Synonyms

Publications