jgi.p|Nanoce1779_2|597239, mRNA_6521 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|597239
Unique Name	mRNA_6521
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1125
Alignment location	scaffold_18:76193..77317 +

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Properties


Property Name	Value
TranscriptId	597325
Track	FilteredModels2
ProteinId	597239

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:76193..77317 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597239	gene_6521	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597239	mRNA_6521-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6521	CDS_6521	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:76193..77317+
coding sequence from alignment at scaffold_18:76193..77317+

mRNA sequence

>mRNA_6521 ID=mRNA_6521|Name=jgi.p|Nanoce1779_2|597239|organism=Nannochloropsis oceanica|type=mRNA|length=1125bp
GACAGAAATTTGCTGAAGTCGTGGTGGTCCGGCTGTTGCTGATCCTGCTG
CTGCTTGTCATACTGCTGCTGCTGCTCCTCCTGCTGTTGGTGTTGCTGCT
GTTGGTAGTGCTGCTCGCGGTGATAGTACTGGTGGTCGCCGTGCGCTGTC
GCCTCAGCCACCTCCTGGTCCTGTGCGTGAGAAACCGACTCTAGGTGTGC
GGCTTGAGGACATCGATGAGGCATGGCCATAGGAGAAGCAGCAGCAGAAG
CAGCAGCAGCAGCAGCAGTAACAGCATCAGCAGCATCGGCGTGGTTGATG
CTTGCAGTCGGGGACAAAGGAGGAACGCCTTCTGACGTGTTAAAGAACTT
GTGGTTGTCGCTGCTCGCTACTGGCCGATTCCTGAGGTTGCCGCTCTGAC
TTGTTTGATTCGTATGACCGTTGAGGCCTGAGCTGTGGTTGCGGGGAGAG
AGGGAAACGGGGGGCAGCCTTGGGGATCGCGTTTGAGCCGGGGATGGGGC
CAGGCGAATCTGCTGTTGCTGTTGCTGGTGCTGTTGAGGTTGCACTGGCT
CATGCTTTGCGAGATGATAGAGTTGCTGATGATGTTGTTGTTGCTGCTGG
TGCTGGTGCTGGACACCAACTTGGTCGTGTGCACTCTTGATGATGTTCTT
AATGGAAGAGGGAGGGGTCCCCAGGCGAAACGCAGACGACGAGGACGTGA
TGGATGGCGATATAGAAGCCATCCTCCTAGGGGTCGTGGCCTTGGAAATG
GCTTCAATGATGGGGCTAGGAGTGGTATAGCTGTTGACAGTCATGGGAGA
GAGGGCGACCGGAACTTTCTTAGGTTGACTTTGATGCTGACTCTGATGGG
TGACGACTGGCGGCAATGGCGACGGCAGGGAAACGGGCGTGGGCAAAGGC
GGGGGGGGGGGCACTAGTACTTCTGCTAAAGGCCGCTCCCACGTTGTCTC
GCCCGACTCGGCGTTGTAGTAGTAGCTAGCCTCGGCATCGTCCGACCAGT
ACTCGACCCAATCGGCGGGCAGGGGAGGCAACGTGACTGAGGACAAGGCC
GGAGACGCCATTTTTGGCAAGTCGGGAAGGTATATAGAGAGGTGACTGCG
AGCAAACGCTAACTGCTACTCCTCT

protein sequence of jgi.p|Nanoce1779_2|597239

>mRNA_6521-protein ID=mRNA_6521-protein|Name=jgi.p|Nanoce1779_2|597239|organism=Nannochloropsis oceanica|type=polypeptide|length=122bp
MLCEMIELLMMLLLLLVLVLDTNLVVCTLDDVLNGRGRGPQAKRRRRGRD
GWRYRSHPPRGRGLGNGFNDGARSGIAVDSHGREGDRNFLRLTLMLTLMG
DDWRQWRRQGNGRGQRRGGGH*

mRNA from alignment at scaffold_18:76193..77317+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6521 ID=mRNA_6521|Name=jgi.p|Nanoce1779_2|597239|organism=Nannochloropsis oceanica|type=mRNA|length=1125bp|location=Sequence derived from alignment at scaffold_18:76193..77317+ (Nannochloropsis oceanica)
GACAGAAATTTGCTGAAGTCGTGGTGGTCCGGCTGTTGCTGATCCTGCTG
CTGCTTGTCATACTGCTGCTGCTGCTCCTCCTGCTGTTGGTGTTGCTGCT
GTTGGTAGTGCTGCTCGCGGTGATAGTACTGGTGGTCGCCGTGCGCTGTC
GCCTCAGCCACCTCCTGGTCCTGTGCGTGAGAAACCGACTCTAGGTGTGC
GGCTTGAGGACATCGATGAGGCATGGCCATAGGAGAAGCAGCAGCAGAAG
CAGCAGCAGCAGCAGCAGTAACAGCATCAGCAGCATCGGCGTGGTTGATG
CTTGCAGTCGGGGACAAAGGAGGAACGCCTTCTGACGTGTTAAAGAACTT
GTGGTTGTCGCTGCTCGCTACTGGCCGATTCCTGAGGTTGCCGCTCTGAC
TTGTTTGATTCGTATGACCGTTGAGGCCTGAGCTGTGGTTGCGGGGAGAG
AGGGAAACGGGGGGCAGCCTTGGGGATCGCGTTTGAGCCGGGGATGGGGC
CAGGCGAATCTGCTGTTGCTGTTGCTGGTGCTGTTGAGGTTGCACTGGCT
CATGCTTTGCGAGATGATAGAGTTGCTGATGATGTTGTTGTTGCTGCTGG
TGCTGGTGCTGGACACCAACTTGGTCGTGTGCACTCTTGATGATGTTCTT
AATGGAAGAGGGAGGGGTCCCCAGGCGAAACGCAGACGACGAGGACGTGA
TGGATGGCGATATAGAAGCCATCCTCCTAGGGGTCGTGGCCTTGGAAATG
GCTTCAATGATGGGGCTAGGAGTGGTATAGCTGTTGACAGTCATGGGAGA
GAGGGCGACCGGAACTTTCTTAGGTTGACTTTGATGCTGACTCTGATGGG
TGACGACTGGCGGCAATGGCGACGGCAGGGAAACGGGCGTGGGCAAAGGC
GGGGGGGGGGGCACTAGTACTTCTGCTAAAGGCCGCTCCCACGTTGTCTC
GCCCGACTCGGCGTTGTAGTAGTAGCTAGCCTCGGCATCGTCCGACCAGT
ACTCGACCCAATCGGCGGGCAGGGGAGGCAACGTGACTGAGGACAAGGCC
GGAGACGCCATTTTTGGCAAGTCGGGAAGGTATATAGAGAGGTGACTGCG
AGCAAACGCTAACTGCTACTCCTCT

Coding sequence (CDS) from alignment at scaffold_18:76193..77317+

>mRNA_6521 ID=mRNA_6521|Name=jgi.p|Nanoce1779_2|597239|organism=Nannochloropsis oceanica|type=CDS|length=366bp|location=Sequence derived from alignment at scaffold_18:76193..77317+ (Nannochloropsis oceanica)
ATGCTTTGCGAGATGATAGAGTTGCTGATGATGTTGTTGTTGCTGCTGGT
GCTGGTGCTGGACACCAACTTGGTCGTGTGCACTCTTGATGATGTTCTTA
ATGGAAGAGGGAGGGGTCCCCAGGCGAAACGCAGACGACGAGGACGTGAT
GGATGGCGATATAGAAGCCATCCTCCTAGGGGTCGTGGCCTTGGAAATGG
CTTCAATGATGGGGCTAGGAGTGGTATAGCTGTTGACAGTCATGGGAGAG
AGGGCGACCGGAACTTTCTTAGGTTGACTTTGATGCTGACTCTGATGGGT
GACGACTGGCGGCAATGGCGACGGCAGGGAAACGGGCGTGGGCAAAGGCG
GGGGGGGGGGCACTAG

Synonyms

Publications