jgi.p|Nanoce1779_2|597233, mRNA_6520 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|597233
Unique Name	mRNA_6520
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1697
Alignment location	scaffold_18:73808..75504 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	597319
Track	FilteredModels2
ProteinId	597233

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:73808..75504 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597233	gene_6520	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597233	mRNA_6520-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6520	CDS_6520	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:73808..75504+
coding sequence from alignment at scaffold_18:73808..75504+

mRNA sequence

>mRNA_6520 ID=mRNA_6520|Name=jgi.p|Nanoce1779_2|597233|organism=Nannochloropsis oceanica|type=mRNA|length=1697bp
CGGACAGAATTTTTCTTTGTTGGAGATCTTTACTTCAGAAGGTGCGGTGC
TGTGACCTTTGATTGAGGCTTCGGTACGTTGGTGTCCTAGCTAAATTCAT
GCAGGAAGAAGGAAGAAGGAACCACTTTTTTCGCCGCAGAAAGAATTCTC
AAAAAAAGGTTGTTTTCAAGCCTACCAAAAAGTAATTGGCGAGGATATTT
GCGCCCCGCCCGACCTTGGAATCAAACATTGCACCGTAGCCGGTCTCACA
CCGCGTTTGATGTTTGAATTCCTGACGATGGAGTGGAAGACGACAGGATG
AATCGATCGTCTTGTTTGCAAGCTTTTTCGTAAGACTTCCTTCACGCGTG
CCTGGCACACAGGCCTCAAACAAAAAATAAAAAATCCGCCACCTCGACGT
AGAAGTGGTGGGAGCGAGCGGACGTTGGCAGAACAAGTACGAAAGAATGA
AAAAGATAGACCGCTACGAGCCAGGACACTAGCCTATCATCTCTACTAAA
CGTAAGCCGTACCAGACAGCCATTTCGGAGAAGAAATTTAGTTTTCCGGC
CAGAATAGCACACACTTCTCTCACACAGCAAGCACACCCACAGACCAGCC
ATCCAAGAATATGACGACAAAAATATGCCGCCGAAGATGATCCTAGTCAT
GTGCGGCCTTCCGGGAGCCGGCAAAAGCTATTGGGCAAGTCGACTCCACT
CCTCAGCAATATCACGGAAGGGAGGTGAGACGAGATTCGACGACGATGTG
CGGCACGTCGATTTTGACGCCGTGGAGGCTGGCCTTCTTCGAGAAGGCAG
TGGTAAGGATAACAGCAATCGAATTGACACGTGGGACACGTGGCATAGTG
CCCGCGTCATGGCCTTGGAGCAGGCCCAGGATATTTTGCGGGAGGAGGTT
GCGGAGAGGCATCGTGTCGTCGTTGTGCTGGACGACAATATGTACTACGC
AAGCATGCGTCGAGAAGCTTACCAGCTCGCCGCCCGGTATGGGGTAGGCT
ATGGCTGCTTGCATGTTGCGACGCCCTTGGACGTGGCATTGGTTCAAAAT
AAATCACGACCAGCAGGGCGATCTGTTACTGAGGAGGTCATTCGGCGGAT
GCACACCAAGCTGCAGGTCCCCGACCCGAATACACGCAGCTGGGAGGCCA
ATACAGTCGCGATTGGGAATATTACAACATTAGAAACACAAGACAATGAA
GCAGAAACGCTGCGTAAAATCTGGACTGTGATAGAGCGTGGATACAAGAC
ACCGGCTACTATCGTTGAAGTCTCCTCGGCGGAAGAAGAGGTGGCCAAGG
AGGAAGCCCGACAACGGACACGCGGAAGTCTCTTACATGCCACAGAGTTG
ATGCTGCGCAAAATTATAGGCACGGCAATGCAGCTAGTAGCCGCTGGGGA
TGGTTTGTTCAATGTGAAACCTTCTAGTTTCGGACCTCGCTTTAGTGCTG
CAAAGGCAGCAGTGATGAGGGAAGTGGGAAAGGGGAACGCCCAATCATTC
ACGCAGGACTGGATTTTACAGCAGGCCGATGCAAAGAATATCCTGGTGGG
TAAATTATTCATTGCGATGCGTGAAAAGGGGAGGGAAGAGGAGACCGCGG
CATTACTAGAATTAGAAAGACAGACGCTGGCAAAGCTTGTAAACATGTAG
AAAAGAAATGTCCTACATGCACCTTTGTGACTTATGCGCATCGACTG

protein sequence of jgi.p|Nanoce1779_2|597233

>mRNA_6520-protein ID=mRNA_6520-protein|Name=jgi.p|Nanoce1779_2|597233|organism=Nannochloropsis oceanica|type=polypeptide|length=342bp
MPPKMILVMCGLPGAGKSYWASRLHSSAISRKGGETRFDDDVRHVDFDAV
EAGLLREGSGKDNSNRIDTWDTWHSARVMALEQAQDILREEVAERHRVVV
VLDDNMYYASMRREAYQLAARYGVGYGCLHVATPLDVALVQNKSRPAGRS
VTEEVIRRMHTKLQVPDPNTRSWEANTVAIGNITTLETQDNEAETLRKIW
TVIERGYKTPATIVEVSSAEEEVAKEEARQRTRGSLLHATELMLRKIIGT
AMQLVAAGDGLFNVKPSSFGPRFSAAKAAVMREVGKGNAQSFTQDWILQQ
ADAKNILVGKLFIAMREKGREEETAALLELERQTLAKLVNM*

mRNA from alignment at scaffold_18:73808..75504+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6520 ID=mRNA_6520|Name=jgi.p|Nanoce1779_2|597233|organism=Nannochloropsis oceanica|type=mRNA|length=1697bp|location=Sequence derived from alignment at scaffold_18:73808..75504+ (Nannochloropsis oceanica)
CGGACAGAATTTTTCTTTGTTGGAGATCTTTACTTCAGAAGGTGCGGTGC
TGTGACCTTTGATTGAGGCTTCGGTACGTTGGTGTCCTAGCTAAATTCAT
GCAGGAAGAAGGAAGAAGGAACCACTTTTTTCGCCGCAGAAAGAATTCTC
AAAAAAAGGTTGTTTTCAAGCCTACCAAAAAGTAATTGGCGAGGATATTT
GCGCCCCGCCCGACCTTGGAATCAAACATTGCACCGTAGCCGGTCTCACA
CCGCGTTTGATGTTTGAATTCCTGACGATGGAGTGGAAGACGACAGGATG
AATCGATCGTCTTGTTTGCAAGCTTTTTCGTAAGACTTCCTTCACGCGTG
CCTGGCACACAGGCCTCAAACAAAAAATAAAAAATCCGCCACCTCGACGT
AGAAGTGGTGGGAGCGAGCGGACGTTGGCAGAACAAGTACGAAAGAATGA
AAAAGATAGACCGCTACGAGCCAGGACACTAGCCTATCATCTCTACTAAA
CGTAAGCCGTACCAGACAGCCATTTCGGAGAAGAAATTTAGTTTTCCGGC
CAGAATAGCACACACTTCTCTCACACAGCAAGCACACCCACAGACCAGCC
ATCCAAGAATATGACGACAAAAATATGCCGCCGAAGATGATCCTAGTCAT
GTGCGGCCTTCCGGGAGCCGGCAAAAGCTATTGGGCAAGTCGACTCCACT
CCTCAGCAATATCACGGAAGGGAGGTGAGACGAGATTCGACGACGATGTG
CGGCACGTCGATTTTGACGCCGTGGAGGCTGGCCTTCTTCGAGAAGGCAG
TGGTAAGGATAACAGCAATCGAATTGACACGTGGGACACGTGGCATAGTG
CCCGCGTCATGGCCTTGGAGCAGGCCCAGGATATTTTGCGGGAGGAGGTT
GCGGAGAGGCATCGTGTCGTCGTTGTGCTGGACGACAATATGTACTACGC
AAGCATGCGTCGAGAAGCTTACCAGCTCGCCGCCCGGTATGGGGTAGGCT
ATGGCTGCTTGCATGTTGCGACGCCCTTGGACGTGGCATTGGTTCAAAAT
AAATCACGACCAGCAGGGCGATCTGTTACTGAGGAGGTCATTCGGCGGAT
GCACACCAAGCTGCAGGTCCCCGACCCGAATACACGCAGCTGGGAGGCCA
ATACAGTCGCGATTGGGAATATTACAACATTAGAAACACAAGACAATGAA
GCAGAAACGCTGCGTAAAATCTGGACTGTGATAGAGCGTGGATACAAGAC
ACCGGCTACTATCGTTGAAGTCTCCTCGGCGGAAGAAGAGGTGGCCAAGG
AGGAAGCCCGACAACGGACACGCGGAAGTCTCTTACATGCCACAGAGTTG
ATGCTGCGCAAAATTATAGGCACGGCAATGCAGCTAGTAGCCGCTGGGGA
TGGTTTGTTCAATGTGAAACCTTCTAGTTTCGGACCTCGCTTTAGTGCTG
CAAAGGCAGCAGTGATGAGGGAAGTGGGAAAGGGGAACGCCCAATCATTC
ACGCAGGACTGGATTTTACAGCAGGCCGATGCAAAGAATATCCTGGTGGG
TAAATTATTCATTGCGATGCGTGAAAAGGGGAGGGAAGAGGAGACCGCGG
CATTACTAGAATTAGAAAGACAGACGCTGGCAAAGCTTGTAAACATGTAG
AAAAGAAATGTCCTACATGCACCTTTGTGACTTATGCGCATCGACTG

Coding sequence (CDS) from alignment at scaffold_18:73808..75504+

>mRNA_6520 ID=mRNA_6520|Name=jgi.p|Nanoce1779_2|597233|organism=Nannochloropsis oceanica|type=CDS|length=1026bp|location=Sequence derived from alignment at scaffold_18:73808..75504+ (Nannochloropsis oceanica)
ATGCCGCCGAAGATGATCCTAGTCATGTGCGGCCTTCCGGGAGCCGGCAA
AAGCTATTGGGCAAGTCGACTCCACTCCTCAGCAATATCACGGAAGGGAG
GTGAGACGAGATTCGACGACGATGTGCGGCACGTCGATTTTGACGCCGTG
GAGGCTGGCCTTCTTCGAGAAGGCAGTGGTAAGGATAACAGCAATCGAAT
TGACACGTGGGACACGTGGCATAGTGCCCGCGTCATGGCCTTGGAGCAGG
CCCAGGATATTTTGCGGGAGGAGGTTGCGGAGAGGCATCGTGTCGTCGTT
GTGCTGGACGACAATATGTACTACGCAAGCATGCGTCGAGAAGCTTACCA
GCTCGCCGCCCGGTATGGGGTAGGCTATGGCTGCTTGCATGTTGCGACGC
CCTTGGACGTGGCATTGGTTCAAAATAAATCACGACCAGCAGGGCGATCT
GTTACTGAGGAGGTCATTCGGCGGATGCACACCAAGCTGCAGGTCCCCGA
CCCGAATACACGCAGCTGGGAGGCCAATACAGTCGCGATTGGGAATATTA
CAACATTAGAAACACAAGACAATGAAGCAGAAACGCTGCGTAAAATCTGG
ACTGTGATAGAGCGTGGATACAAGACACCGGCTACTATCGTTGAAGTCTC
CTCGGCGGAAGAAGAGGTGGCCAAGGAGGAAGCCCGACAACGGACACGCG
GAAGTCTCTTACATGCCACAGAGTTGATGCTGCGCAAAATTATAGGCACG
GCAATGCAGCTAGTAGCCGCTGGGGATGGTTTGTTCAATGTGAAACCTTC
TAGTTTCGGACCTCGCTTTAGTGCTGCAAAGGCAGCAGTGATGAGGGAAG
TGGGAAAGGGGAACGCCCAATCATTCACGCAGGACTGGATTTTACAGCAG
GCCGATGCAAAGAATATCCTGGTGGGTAAATTATTCATTGCGATGCGTGA
AAAGGGGAGGGAAGAGGAGACCGCGGCATTACTAGAATTAGAAAGACAGA
CGCTGGCAAAGCTTGTAAACATGTAG

Synonyms

Publications