jgi.p|Nanoce1779_2|121498, mRNA_6519 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|121498
Unique NamemRNA_6519
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1128
Alignment locationscaffold_18:72233..73451 -

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Properties
Property NameValue
TranscriptId121584
TrackFilteredModels2
ProteinId121498
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:72233..73451 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|121498gene_6519Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|121498mRNA_6519-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6519CDS_6519Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6519 ID=mRNA_6519|Name=jgi.p|Nanoce1779_2|121498|organism=Nannochloropsis oceanica|type=mRNA|length=1128bp
AATTTTTACGCATTTTTTTTTCCAAAGGTATTATTAATTATGTCCCAGAC
ATGCGCACGATTATAACACAGGAGCTTCTGTCGTCAAATGGTGGAATGAT
GTTGCAATCCCCCCCCCCCCCGATGGGCCGCAAGTTATTCAGGATCTCGG
GTCACGGACTTGTAGATAAGGAGATCAAAGCCGTGCTTGATAAGCTGGAA
AGTCGCGCGGATCGCGCTTCTTGGCCATACACGCAGCTTACAACCTCCTC
TCGGGCACTGTTCCTTTTGCAGCCCTGAAACCCTGTATGGCTGTGTCTCT
TGTGGAACTCCACCTATCTCATAATGGCATCAAGGTCGTGGCTGGACTGG
AATCTTTTACCAATTTGCAGGTCCTTGACTTGTCTTACAAAAAGCTTGCA
AGGCAGGGGGATCTACGCGCACTTTCCTTCAACGCAAGGCTTCGAGTCCT
CTCCCTCGTCGGAAATCCTTTGGCCAAATCATCGACAGCTCAAGAGCTCC
GGAGAACTGTGTTTCACTTGCTTCCCGCTTTGTGCTCTATGGATGGTACG
GTTTTCCCCTCGATGTCGTTGGCGGTGGCCCCGTCCCAAAAGGTGAACGT
CTCGGCGGCGGCTGCTGCCAATGGCAGGTTCGAGGTCAATTCATACCTGC
TGCTCCACTTGCGGGCCATCAATCGCAACACCAACCAAATAGCAACAAAT
TTGTCTGCGACCTGCTCGCAAAATAGTGCATCAATATATGGCTTGACGTA
CGCTCAACAAAAGCACCTCGCATCGCGCACGCCCACATTTGCCTCTACAG
TAACACCACCACCCTCTCGGTCTCGACTAAGGTACATCCCTCCATGGCGC
AGGATTCCCAACCCCATTTCTAAGGGATGGAGGAGATTCAATGTTCCTGC
AAATGTAACTGGCATAGTGTCACCCTCCGCGCGCATTGAGAGTGTTCTTG
CCTCCGCCAAGGTGGCGGCAATGAGTGGATGACAGCGGCAGAGCCGTCTT
TTCTTAAAAAGATCATCAAGGATTAAGCAAAAGATGATATAAGAACGAAA
ATGAATAAAAAGGTGTTTAATCGCGATGTTTTGTTCGATTGGTTTGTTTG
CGTTCATTGGCCGGAGGTCGCAGTAGCT
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protein sequence of jgi.p|Nanoce1779_2|121498

>mRNA_6519-protein ID=mRNA_6519-protein|Name=jgi.p|Nanoce1779_2|121498|organism=Nannochloropsis oceanica|type=polypeptide|length=232bp
MAVSLVELHLSHNGIKVVAGLESFTNLQVLDLSYKKLARQGDLRALSFNA
RLRVLSLVGNPLAKSSTAQELRRTVFHLLPALCSMDGTVFPSMSLAVAPS
QKVNVSAAAAANGRFEVNSYLLLHLRAINRNTNQIATNLSATCSQNSASI
YGLTYAQQKHLASRTPTFASTVTPPPSRSRLRYIPPWRRIPNPISKGWRR
FNVPANVTGIVSPSARIESVLASAKVAAMSG*
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mRNA from alignment at scaffold_18:72233..73451-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6519 ID=mRNA_6519|Name=jgi.p|Nanoce1779_2|121498|organism=Nannochloropsis oceanica|type=mRNA|length=1219bp|location=Sequence derived from alignment at scaffold_18:72233..73451- (Nannochloropsis oceanica)
AATTTTTACGCATTTTTTTTTCCAAAGGTATTATTAATTATGTCCCAGAC
ATGCGCACGATTATAACACAGGAGCTTCTGTCGTCAAATGGTGGAATGAT
GTTGCAATCCCCCCCCCCCCCGATGGGCCGCAAGTTATTCAGGTGAGTTG
GTTGGCCCATGGGGCTACGACTTCTCCAACCCACCTTGCCCACATCCCTT
CCATATCATCCATGAATCCCACGTGCCAAAAAGGATCTCGGGTCACGGAC
TTGTAGATAAGGAGATCAAAGCCGTGCTTGATAAGCTGGAAAGTCGCGCG
GATCGCGCTTCTTGGCCATACACGCAGCTTACAACCTCCTCTCGGGCACT
GTTCCTTTTGCAGCCCTGAAACCCTGTATGGCTGTGTCTCTTGTGGAACT
CCACCTATCTCATAATGGCATCAAGGTCGTGGCTGGACTGGAATCTTTTA
CCAATTTGCAGGTCCTTGACTTGTCTTACAAAAAGCTTGCAAGGCAGGGG
GATCTACGCGCACTTTCCTTCAACGCAAGGCTTCGAGTCCTCTCCCTCGT
CGGAAATCCTTTGGCCAAATCATCGACAGCTCAAGAGCTCCGGAGAACTG
TGTTTCACTTGCTTCCCGCTTTGTGCTCTATGGATGGTACGGTTTTCCCC
TCGATGTCGTTGGCGGTGGCCCCGTCCCAAAAGGTGAACGTCTCGGCGGC
GGCTGCTGCCAATGGCAGGTTCGAGGTCAATTCATACCTGCTGCTCCACT
TGCGGGCCATCAATCGCAACACCAACCAAATAGCAACAAATTTGTCTGCG
ACCTGCTCGCAAAATAGTGCATCAATATATGGCTTGACGTACGCTCAACA
AAAGCACCTCGCATCGCGCACGCCCACATTTGCCTCTACAGTAACACCAC
CACCCTCTCGGTCTCGACTAAGGTACATCCCTCCATGGCGCAGGATTCCC
AACCCCATTTCTAAGGGATGGAGGAGATTCAATGTTCCTGCAAATGTAAC
TGGCATAGTGTCACCCTCCGCGCGCATTGAGAGTGTTCTTGCCTCCGCCA
AGGTGGCGGCAATGAGTGGATGACAGCGGCAGAGCCGTCTTTTCTTAAAA
AGATCATCAAGGATTAAGCAAAAGATGATATAAGAACGAAAATGAATAAA
AAGGTGTTTAATCGCGATGTTTTGTTCGATTGGTTTGTTTGCGTTCATTG
GCCGGAGGTCGCAGTAGCT
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Coding sequence (CDS) from alignment at scaffold_18:72233..73451-

>mRNA_6519 ID=mRNA_6519|Name=jgi.p|Nanoce1779_2|121498|organism=Nannochloropsis oceanica|type=CDS|length=696bp|location=Sequence derived from alignment at scaffold_18:72233..73451- (Nannochloropsis oceanica)
ATGGCTGTGTCTCTTGTGGAACTCCACCTATCTCATAATGGCATCAAGGT
CGTGGCTGGACTGGAATCTTTTACCAATTTGCAGGTCCTTGACTTGTCTT
ACAAAAAGCTTGCAAGGCAGGGGGATCTACGCGCACTTTCCTTCAACGCA
AGGCTTCGAGTCCTCTCCCTCGTCGGAAATCCTTTGGCCAAATCATCGAC
AGCTCAAGAGCTCCGGAGAACTGTGTTTCACTTGCTTCCCGCTTTGTGCT
CTATGGATGGTACGGTTTTCCCCTCGATGTCGTTGGCGGTGGCCCCGTCC
CAAAAGGTGAACGTCTCGGCGGCGGCTGCTGCCAATGGCAGGTTCGAGGT
CAATTCATACCTGCTGCTCCACTTGCGGGCCATCAATCGCAACACCAACC
AAATAGCAACAAATTTGTCTGCGACCTGCTCGCAAAATAGTGCATCAATA
TATGGCTTGACGTACGCTCAACAAAAGCACCTCGCATCGCGCACGCCCAC
ATTTGCCTCTACAGTAACACCACCACCCTCTCGGTCTCGACTAAGGTACA
TCCCTCCATGGCGCAGGATTCCCAACCCCATTTCTAAGGGATGGAGGAGA
TTCAATGTTCCTGCAAATGTAACTGGCATAGTGTCACCCTCCGCGCGCAT
TGAGAGTGTTCTTGCCTCCGCCAAGGTGGCGGCAATGAGTGGATGA
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Synonyms
Publications