jgi.p|Nanoce1779_2|597230, mRNA_6518 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597230
Unique NamemRNA_6518
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1572
Alignment locationscaffold_18:70391..71962 -

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Properties
Property NameValue
TranscriptId597316
TrackFilteredModels2
ProteinId597230
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:70391..71962 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597230gene_6518Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597230mRNA_6518-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6518CDS_6518Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6518 ID=mRNA_6518|Name=jgi.p|Nanoce1779_2|597230|organism=Nannochloropsis oceanica|type=mRNA|length=1572bp
AGGGCAGCCCCCATCCCCGAAGTAGCCAAACATGGTCGGCTGGAGCCATT
GCTTGGCACTGACGCTGGGCCTGGCCTCGAGCGCTCGTGCGTTTGTGCCG
TCTCTACCCGCAGGTGGCATCGGCGTACGTCCTGCCCTCACTACCGACCT
GGCCACAACCCCCCATCCGCATCACTGCGCCTGTCCTACCTGTACACGGA
ACACGGGAAGGGCAGGAGAAGCCATCGCCCATCCCGGGGCACGGAGAAGG
GCCGAGGCCCTGGTGCTGATGGCGCGGGGCCGGCGAGGACGGGGTGGCGG
AGGGTGGCAACGACGCCGGCGGCAGGATGCCAACCCAGTAGAGTTTGACA
AGTACGGTTTCCCCATTCCCCCCAAGAAACCCGCCAAAGAATTGGAAGAG
GAGCATCGGAAATGGCTAGAGTCGATTGAGCCTCCGGAGGGCTTTCCAGA
ATTTGACGCGAGCAAAGAGGGGTTCACGGTGGAGGAGATAGAGAACGACA
ATTTGATTGATCCCGCAGCGGCTTACGCAGCGGCGGAGGCAGCAACAGCA
GCAGCAGCGGCGGCACAGGCGAGTGGAGAGGGGGCTCCGCAGGAGAACGA
GCCTGATTGGGATAATATTCCGGAGTATGGTGGGGAATTTCTGGGGATGG
ATGATCCGTTGGATGCGCCGTGGCGGAGGCAAGGGGAGGAGTTGATTAGG
GCGGCGGTGGTTGAGGCGGGCTTTGATGTTTATGACGTGACTTGGCATTT
GCATCATGTAAATGTGGATATTACAAGGGGAGAGGATTGTCATGAGGGAG
GGGAAGCAGGGATGGAAAGAGGGTCGTTGTCGTCGGATGAGATTGTGGAC
GTGACCAGAGCGATTGAAGAGGCATTGTTCCCTCATGATAGGCAGCTGAA
GATTCTGCAGCGATTCCATTTGTGTGTGGGCACTCCGGGGGCAAAAGATA
TATTGACGACGGAAAGAGAATTTCAGGCGTTTAGAGGCTTTGAAGTGAAT
GTGCTGTTGAAGAGTCCGATTAATGAGACACAAAGTCAGAATGTGCGTGT
TGGGCGACTGATGGAACGAGGGCCTGTGCAGACAATATTGAATGTAAAGG
GTAAAAATGTCACCATCCTCACGGATATGATCCATGAGATGCGCTTGCCG
GAAGCAATGCACGAAATCGACGATTTCGAGGTGATGGACGAGGGTTGGGC
GAATTTATTTGTGGATGGGAAGGTACCCGGAACGATACAGGTTGAGTATG
ACATGCCGGGCTTGGTGACCCTGGGTAAGGGGGTGAGGATGGTGGAGCCT
GAGTATTATGTGCCGCCGGCTATTCCGGACGAGGACGGGGAGGAGATGAT
GGATGATGGGGAGGAATACAGTCTAGAGGAGGAGGAGGAGTAGAGGGGAT
GAGGGAGAGAGGGAGGAAAAGGGATGGACGGTATAAATATTCAATCAAAC
AAAGAGAGCGGCAGCAACAGAAGCAGCAGCTGCAGCAATTGCAGCAATAA
CAACAACGAAGGAGGACCAAGAGCTTAGGAAAAAGTAGAAAATGGAACTA
AGTTTGATTGAGCGACAGACAA
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protein sequence of jgi.p|Nanoce1779_2|597230

>mRNA_6518-protein ID=mRNA_6518-protein|Name=jgi.p|Nanoce1779_2|597230|organism=Nannochloropsis oceanica|type=polypeptide|length=454bp
MVGWSHCLALTLGLASSARAFVPSLPAGGIGVRPALTTDLATTPHPHHCA
CPTCTRNTGRAGEAIAHPGARRRAEALVLMARGRRGRGGGGWQRRRRQDA
NPVEFDKYGFPIPPKKPAKELEEEHRKWLESIEPPEGFPEFDASKEGFTV
EEIENDNLIDPAAAYAAAEAATAAAAAAQASGEGAPQENEPDWDNIPEYG
GEFLGMDDPLDAPWRRQGEELIRAAVVEAGFDVYDVTWHLHHVNVDITRG
EDCHEGGEAGMERGSLSSDEIVDVTRAIEEALFPHDRQLKILQRFHLCVG
TPGAKDILTTEREFQAFRGFEVNVLLKSPINETQSQNVRVGRLMERGPVQ
TILNVKGKNVTILTDMIHEMRLPEAMHEIDDFEVMDEGWANLFVDGKVPG
TIQVEYDMPGLVTLGKGVRMVEPEYYVPPAIPDEDGEEMMDDGEEYSLEE
EEE*
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mRNA from alignment at scaffold_18:70391..71962-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6518 ID=mRNA_6518|Name=jgi.p|Nanoce1779_2|597230|organism=Nannochloropsis oceanica|type=mRNA|length=1572bp|location=Sequence derived from alignment at scaffold_18:70391..71962- (Nannochloropsis oceanica)
AGGGCAGCCCCCATCCCCGAAGTAGCCAAACATGGTCGGCTGGAGCCATT
GCTTGGCACTGACGCTGGGCCTGGCCTCGAGCGCTCGTGCGTTTGTGCCG
TCTCTACCCGCAGGTGGCATCGGCGTACGTCCTGCCCTCACTACCGACCT
GGCCACAACCCCCCATCCGCATCACTGCGCCTGTCCTACCTGTACACGGA
ACACGGGAAGGGCAGGAGAAGCCATCGCCCATCCCGGGGCACGGAGAAGG
GCCGAGGCCCTGGTGCTGATGGCGCGGGGCCGGCGAGGACGGGGTGGCGG
AGGGTGGCAACGACGCCGGCGGCAGGATGCCAACCCAGTAGAGTTTGACA
AGTACGGTTTCCCCATTCCCCCCAAGAAACCCGCCAAAGAATTGGAAGAG
GAGCATCGGAAATGGCTAGAGTCGATTGAGCCTCCGGAGGGCTTTCCAGA
ATTTGACGCGAGCAAAGAGGGGTTCACGGTGGAGGAGATAGAGAACGACA
ATTTGATTGATCCCGCAGCGGCTTACGCAGCGGCGGAGGCAGCAACAGCA
GCAGCAGCGGCGGCACAGGCGAGTGGAGAGGGGGCTCCGCAGGAGAACGA
GCCTGATTGGGATAATATTCCGGAGTATGGTGGGGAATTTCTGGGGATGG
ATGATCCGTTGGATGCGCCGTGGCGGAGGCAAGGGGAGGAGTTGATTAGG
GCGGCGGTGGTTGAGGCGGGCTTTGATGTTTATGACGTGACTTGGCATTT
GCATCATGTAAATGTGGATATTACAAGGGGAGAGGATTGTCATGAGGGAG
GGGAAGCAGGGATGGAAAGAGGGTCGTTGTCGTCGGATGAGATTGTGGAC
GTGACCAGAGCGATTGAAGAGGCATTGTTCCCTCATGATAGGCAGCTGAA
GATTCTGCAGCGATTCCATTTGTGTGTGGGCACTCCGGGGGCAAAAGATA
TATTGACGACGGAAAGAGAATTTCAGGCGTTTAGAGGCTTTGAAGTGAAT
GTGCTGTTGAAGAGTCCGATTAATGAGACACAAAGTCAGAATGTGCGTGT
TGGGCGACTGATGGAACGAGGGCCTGTGCAGACAATATTGAATGTAAAGG
GTAAAAATGTCACCATCCTCACGGATATGATCCATGAGATGCGCTTGCCG
GAAGCAATGCACGAAATCGACGATTTCGAGGTGATGGACGAGGGTTGGGC
GAATTTATTTGTGGATGGGAAGGTACCCGGAACGATACAGGTTGAGTATG
ACATGCCGGGCTTGGTGACCCTGGGTAAGGGGGTGAGGATGGTGGAGCCT
GAGTATTATGTGCCGCCGGCTATTCCGGACGAGGACGGGGAGGAGATGAT
GGATGATGGGGAGGAATACAGTCTAGAGGAGGAGGAGGAGTAGAGGGGAT
GAGGGAGAGAGGGAGGAAAAGGGATGGACGGTATAAATATTCAATCAAAC
AAAGAGAGCGGCAGCAACAGAAGCAGCAGCTGCAGCAATTGCAGCAATAA
CAACAACGAAGGAGGACCAAGAGCTTAGGAAAAAGTAGAAAATGGAACTA
AGTTTGATTGAGCGACAGACAA
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Coding sequence (CDS) from alignment at scaffold_18:70391..71962-

>mRNA_6518 ID=mRNA_6518|Name=jgi.p|Nanoce1779_2|597230|organism=Nannochloropsis oceanica|type=CDS|length=1362bp|location=Sequence derived from alignment at scaffold_18:70391..71962- (Nannochloropsis oceanica)
ATGGTCGGCTGGAGCCATTGCTTGGCACTGACGCTGGGCCTGGCCTCGAG
CGCTCGTGCGTTTGTGCCGTCTCTACCCGCAGGTGGCATCGGCGTACGTC
CTGCCCTCACTACCGACCTGGCCACAACCCCCCATCCGCATCACTGCGCC
TGTCCTACCTGTACACGGAACACGGGAAGGGCAGGAGAAGCCATCGCCCA
TCCCGGGGCACGGAGAAGGGCCGAGGCCCTGGTGCTGATGGCGCGGGGCC
GGCGAGGACGGGGTGGCGGAGGGTGGCAACGACGCCGGCGGCAGGATGCC
AACCCAGTAGAGTTTGACAAGTACGGTTTCCCCATTCCCCCCAAGAAACC
CGCCAAAGAATTGGAAGAGGAGCATCGGAAATGGCTAGAGTCGATTGAGC
CTCCGGAGGGCTTTCCAGAATTTGACGCGAGCAAAGAGGGGTTCACGGTG
GAGGAGATAGAGAACGACAATTTGATTGATCCCGCAGCGGCTTACGCAGC
GGCGGAGGCAGCAACAGCAGCAGCAGCGGCGGCACAGGCGAGTGGAGAGG
GGGCTCCGCAGGAGAACGAGCCTGATTGGGATAATATTCCGGAGTATGGT
GGGGAATTTCTGGGGATGGATGATCCGTTGGATGCGCCGTGGCGGAGGCA
AGGGGAGGAGTTGATTAGGGCGGCGGTGGTTGAGGCGGGCTTTGATGTTT
ATGACGTGACTTGGCATTTGCATCATGTAAATGTGGATATTACAAGGGGA
GAGGATTGTCATGAGGGAGGGGAAGCAGGGATGGAAAGAGGGTCGTTGTC
GTCGGATGAGATTGTGGACGTGACCAGAGCGATTGAAGAGGCATTGTTCC
CTCATGATAGGCAGCTGAAGATTCTGCAGCGATTCCATTTGTGTGTGGGC
ACTCCGGGGGCAAAAGATATATTGACGACGGAAAGAGAATTTCAGGCGTT
TAGAGGCTTTGAAGTGAATGTGCTGTTGAAGAGTCCGATTAATGAGACAC
AAAGTCAGAATGTGCGTGTTGGGCGACTGATGGAACGAGGGCCTGTGCAG
ACAATATTGAATGTAAAGGGTAAAAATGTCACCATCCTCACGGATATGAT
CCATGAGATGCGCTTGCCGGAAGCAATGCACGAAATCGACGATTTCGAGG
TGATGGACGAGGGTTGGGCGAATTTATTTGTGGATGGGAAGGTACCCGGA
ACGATACAGGTTGAGTATGACATGCCGGGCTTGGTGACCCTGGGTAAGGG
GGTGAGGATGGTGGAGCCTGAGTATTATGTGCCGCCGGCTATTCCGGACG
AGGACGGGGAGGAGATGATGGATGATGGGGAGGAATACAGTCTAGAGGAG
GAGGAGGAGTAG
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Synonyms
Publications