jgi.p|Nanoce1779_2|597227, mRNA_6517 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|597227
Unique Name	mRNA_6517
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1671
Alignment location	scaffold_18:68709..70379 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	597313
Track	FilteredModels2
ProteinId	597227

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:68709..70379 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597227	gene_6517	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597227	mRNA_6517-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6517	CDS_6517	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:68709..70379+
coding sequence from alignment at scaffold_18:68709..70379+

mRNA sequence

>mRNA_6517 ID=mRNA_6517|Name=jgi.p|Nanoce1779_2|597227|organism=Nannochloropsis oceanica|type=mRNA|length=1671bp
AGAAAAGGAACAGATATGAGGGAGGGAGGAGGCCAGGCTTGAAGCATTTT
CGCTATATCAGCGATACCAGCCTGTCTCACCCTGTCCTCACCCTGTCCTC
ACTCACCCCTATCACTACCATTTTATGTATGCACATAGGAAGAGCCAGAC
GACGGTAAAGGCAAGGACAAGGGGCCGAGGGCAAGCCAAGGCCTCCTTGT
CAACCTCGACCTCCCCGCTTTTCTACCCCTCGGATGGTGATGCGGGGTTG
TAGTCCGCCAACTGGGCCACCATGCTGTGTCTTCCTTCTCGTCGCCCTCC
TCACCATTTGCCTAATCTCTCCTCTCCCCACCGTCCACGCTGCCGTCGAA
GGGGCGAGCACAGGCGGTCGTCGAGTTGTGGAAGTCTACCACCCTTTCCC
CTTCACGCCCGAAGGCCTCATCCGCCAGCTGACCCATGCCCAGCAAGCCG
TCAACAAAGGTAGCCTCTCCATTGCTTTGGCAGCGAAAGACGGTGTCGTC
CTTATTGGGGAACGCCGGGATTTATCTCCACTCGTCGTGGGTCCCACGCC
TAAGATTGGGAGATTAGCTCAGCATGTGGCATACGTAATGGCAGGCCTCG
TGCCGGATGGCCGTTATCTGGTGCGACGTGGACGGGCCTTGGCGCAAAAA
CACTGGTTTGAATACGGAGAGGAAGTGGGATTACCTGCTTTGTTAATGGA
GCTGAGCAAAGTCGTGACTTCGGCACATTATCGAGCCCCGCGCGAGGGGA
AGACTGGAGGCAACAAGGGAGAGAAGAGTAGTAGTTTTTTTGAGGAAATT
CGGTCGAGGCCATCTGTGGACCCCATAGGGGATGCTGAAGCCGAGGTTCG
GAAGGAGGGACTGCCTGCGAGACATTTCGGGGTTGGGTTTTTGTTTGCGG
GGCCGGAGGTCGAGTGTGAGGCGCCGGCGCTGTTAGAGCCTCTTGTTGAA
GGAGGGAGGGAGGGCGAGGAAATGAGGAAGGACGGGGTCTACCCACCATG
GGTGGTATATGAAATGGGACCTTCGGGGCTATTCGTCCGGTGGTCGGCCA
GGGCGATTGGGGAGGGAGGGGAACAGGCGGAGGCTTTGTTGGAAGCGAGA
TATCGACCGGATATGAGCTTAGAGGCGTGTAAACGGCTTGCGGTTCAAGT
GTGTGACACGGTGTTGGCCGCCTCCTCTCCCTCTGCTCCGCTTCCTTCCT
CCTTCACGGCGAGGCAGGAGGAGACAATAGAGAATTTGGAGATGGCGTGT
TTAACGAGGGATGGAAATGGCCGGCCTTTCTTGAAACGGTTGTCAGATGA
GGAGCTGAGGCAGTTACGGGGAAGGGTCAGTGAGACGATGGGGTTGGTGG
AAGCCACCACCACTACCACATCCTCCTCCTCTTAATTATCCTCTATATAC
TCCTCCACCTTCTCGTCCTACTCCTTCCCCCCTCACCATCTGGTTGATGA
TTCACCATGTAAATAGTCTTAGAGATGCAGGGATAAAGGTAGCACTGACA
AATGCCTTGAGAAGCATCCGTTGAATACAATTCACCATCAATATAAATGC
AAAATTAAGATGAACCAGTAAAATTCATTCACACCCACACCCGCCCAGCC
TCTAAAATGTCACCGCGGAAGATAAAGTAATGGTGAAGAAATGAAACAAA
AGCACATCACTCGTGACTTTC

protein sequence of jgi.p|Nanoce1779_2|597227

>mRNA_6517-protein ID=mRNA_6517-protein|Name=jgi.p|Nanoce1779_2|597227|organism=Nannochloropsis oceanica|type=polypeptide|length=384bp
MVMRGCSPPTGPPCCVFLLVALLTICLISPLPTVHAAVEGASTGGRRVVE
VYHPFPFTPEGLIRQLTHAQQAVNKGSLSIALAAKDGVVLIGERRDLSPL
VVGPTPKIGRLAQHVAYVMAGLVPDGRYLVRRGRALAQKHWFEYGEEVGL
PALLMELSKVVTSAHYRAPREGKTGGNKGEKSSSFFEEIRSRPSVDPIGD
AEAEVRKEGLPARHFGVGFLFAGPEVECEAPALLEPLVEGGREGEEMRKD
GVYPPWVVYEMGPSGLFVRWSARAIGEGGEQAEALLEARYRPDMSLEACK
RLAVQVCDTVLAASSPSAPLPSSFTARQEETIENLEMACLTRDGNGRPFL
KRLSDEELRQLRGRVSETMGLVEATTTTTSSSS*

mRNA from alignment at scaffold_18:68709..70379+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6517 ID=mRNA_6517|Name=jgi.p|Nanoce1779_2|597227|organism=Nannochloropsis oceanica|type=mRNA|length=1671bp|location=Sequence derived from alignment at scaffold_18:68709..70379+ (Nannochloropsis oceanica)
AGAAAAGGAACAGATATGAGGGAGGGAGGAGGCCAGGCTTGAAGCATTTT
CGCTATATCAGCGATACCAGCCTGTCTCACCCTGTCCTCACCCTGTCCTC
ACTCACCCCTATCACTACCATTTTATGTATGCACATAGGAAGAGCCAGAC
GACGGTAAAGGCAAGGACAAGGGGCCGAGGGCAAGCCAAGGCCTCCTTGT
CAACCTCGACCTCCCCGCTTTTCTACCCCTCGGATGGTGATGCGGGGTTG
TAGTCCGCCAACTGGGCCACCATGCTGTGTCTTCCTTCTCGTCGCCCTCC
TCACCATTTGCCTAATCTCTCCTCTCCCCACCGTCCACGCTGCCGTCGAA
GGGGCGAGCACAGGCGGTCGTCGAGTTGTGGAAGTCTACCACCCTTTCCC
CTTCACGCCCGAAGGCCTCATCCGCCAGCTGACCCATGCCCAGCAAGCCG
TCAACAAAGGTAGCCTCTCCATTGCTTTGGCAGCGAAAGACGGTGTCGTC
CTTATTGGGGAACGCCGGGATTTATCTCCACTCGTCGTGGGTCCCACGCC
TAAGATTGGGAGATTAGCTCAGCATGTGGCATACGTAATGGCAGGCCTCG
TGCCGGATGGCCGTTATCTGGTGCGACGTGGACGGGCCTTGGCGCAAAAA
CACTGGTTTGAATACGGAGAGGAAGTGGGATTACCTGCTTTGTTAATGGA
GCTGAGCAAAGTCGTGACTTCGGCACATTATCGAGCCCCGCGCGAGGGGA
AGACTGGAGGCAACAAGGGAGAGAAGAGTAGTAGTTTTTTTGAGGAAATT
CGGTCGAGGCCATCTGTGGACCCCATAGGGGATGCTGAAGCCGAGGTTCG
GAAGGAGGGACTGCCTGCGAGACATTTCGGGGTTGGGTTTTTGTTTGCGG
GGCCGGAGGTCGAGTGTGAGGCGCCGGCGCTGTTAGAGCCTCTTGTTGAA
GGAGGGAGGGAGGGCGAGGAAATGAGGAAGGACGGGGTCTACCCACCATG
GGTGGTATATGAAATGGGACCTTCGGGGCTATTCGTCCGGTGGTCGGCCA
GGGCGATTGGGGAGGGAGGGGAACAGGCGGAGGCTTTGTTGGAAGCGAGA
TATCGACCGGATATGAGCTTAGAGGCGTGTAAACGGCTTGCGGTTCAAGT
GTGTGACACGGTGTTGGCCGCCTCCTCTCCCTCTGCTCCGCTTCCTTCCT
CCTTCACGGCGAGGCAGGAGGAGACAATAGAGAATTTGGAGATGGCGTGT
TTAACGAGGGATGGAAATGGCCGGCCTTTCTTGAAACGGTTGTCAGATGA
GGAGCTGAGGCAGTTACGGGGAAGGGTCAGTGAGACGATGGGGTTGGTGG
AAGCCACCACCACTACCACATCCTCCTCCTCTTAATTATCCTCTATATAC
TCCTCCACCTTCTCGTCCTACTCCTTCCCCCCTCACCATCTGGTTGATGA
TTCACCATGTAAATAGTCTTAGAGATGCAGGGATAAAGGTAGCACTGACA
AATGCCTTGAGAAGCATCCGTTGAATACAATTCACCATCAATATAAATGC
AAAATTAAGATGAACCAGTAAAATTCATTCACACCCACACCCGCCCAGCC
TCTAAAATGTCACCGCGGAAGATAAAGTAATGGTGAAGAAATGAAACAAA
AGCACATCACTCGTGACTTTC

Coding sequence (CDS) from alignment at scaffold_18:68709..70379+

>mRNA_6517 ID=mRNA_6517|Name=jgi.p|Nanoce1779_2|597227|organism=Nannochloropsis oceanica|type=CDS|length=1152bp|location=Sequence derived from alignment at scaffold_18:68709..70379+ (Nannochloropsis oceanica)
ATGGTGATGCGGGGTTGTAGTCCGCCAACTGGGCCACCATGCTGTGTCTT
CCTTCTCGTCGCCCTCCTCACCATTTGCCTAATCTCTCCTCTCCCCACCG
TCCACGCTGCCGTCGAAGGGGCGAGCACAGGCGGTCGTCGAGTTGTGGAA
GTCTACCACCCTTTCCCCTTCACGCCCGAAGGCCTCATCCGCCAGCTGAC
CCATGCCCAGCAAGCCGTCAACAAAGGTAGCCTCTCCATTGCTTTGGCAG
CGAAAGACGGTGTCGTCCTTATTGGGGAACGCCGGGATTTATCTCCACTC
GTCGTGGGTCCCACGCCTAAGATTGGGAGATTAGCTCAGCATGTGGCATA
CGTAATGGCAGGCCTCGTGCCGGATGGCCGTTATCTGGTGCGACGTGGAC
GGGCCTTGGCGCAAAAACACTGGTTTGAATACGGAGAGGAAGTGGGATTA
CCTGCTTTGTTAATGGAGCTGAGCAAAGTCGTGACTTCGGCACATTATCG
AGCCCCGCGCGAGGGGAAGACTGGAGGCAACAAGGGAGAGAAGAGTAGTA
GTTTTTTTGAGGAAATTCGGTCGAGGCCATCTGTGGACCCCATAGGGGAT
GCTGAAGCCGAGGTTCGGAAGGAGGGACTGCCTGCGAGACATTTCGGGGT
TGGGTTTTTGTTTGCGGGGCCGGAGGTCGAGTGTGAGGCGCCGGCGCTGT
TAGAGCCTCTTGTTGAAGGAGGGAGGGAGGGCGAGGAAATGAGGAAGGAC
GGGGTCTACCCACCATGGGTGGTATATGAAATGGGACCTTCGGGGCTATT
CGTCCGGTGGTCGGCCAGGGCGATTGGGGAGGGAGGGGAACAGGCGGAGG
CTTTGTTGGAAGCGAGATATCGACCGGATATGAGCTTAGAGGCGTGTAAA
CGGCTTGCGGTTCAAGTGTGTGACACGGTGTTGGCCGCCTCCTCTCCCTC
TGCTCCGCTTCCTTCCTCCTTCACGGCGAGGCAGGAGGAGACAATAGAGA
ATTTGGAGATGGCGTGTTTAACGAGGGATGGAAATGGCCGGCCTTTCTTG
AAACGGTTGTCAGATGAGGAGCTGAGGCAGTTACGGGGAAGGGTCAGTGA
GACGATGGGGTTGGTGGAAGCCACCACCACTACCACATCCTCCTCCTCTT
AA

Synonyms

Publications