jgi.p|Nanoce1779_2|597223, mRNA_6516 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597223
Unique NamemRNA_6516
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length613
Alignment locationscaffold_18:66765..67377 +

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Properties
Property NameValue
TranscriptId597309
TrackFilteredModels2
ProteinId597223
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:66765..67377 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597223gene_6516Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597223mRNA_6516-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6516CDS_6516Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6516 ID=mRNA_6516|Name=jgi.p|Nanoce1779_2|597223|organism=Nannochloropsis oceanica|type=mRNA|length=613bp
GGAGGATTATTATGAAGGACAGGACGGGCCCGAGGAAGGGAGGGAGGGGT
GGGGTTGAGATTCTTGGATTTGTTGTTGTTGCTGCTGTTGCTACTGCTGA
CCCTAGACGGTCGGTGCGCTTCTATTATTTTTGTCGCGGCCACTTTGAAT
GTCCTTGCATGATTTTTTGGTTTGCTCGCAGAGGGCTTAGGATTTCTTGC
TGCTGCTGCTGCTGCTGCTGCAGACGATGGTAGTAGATCGTTTGGCGCAG
AAGTAGGCTTAGTTTTGCGGGAGGCAGGGACGGAGGAATCGATAGAAGGA
GGGTGCTTGACCCGAGGGGATGGTCTTCGACGATGACGGTGAGCACTTCG
GTGGCGCCATCCTTCGTCTTCGTCTTCTACGTCTCTTTCGTCTTCTTGTC
CTTTTCCCACCTCTTCAGCAGCTCGTCGCTGAGTCCGGCGAATAGGCCGT
CGGACTTCCGGTTCCTCTTCTCCTTCACTGCTGCTGCTGTTCGACCATGA
GGATGGAGTATCACGATTACATCTCTCCGCCTCCTCCTCCTCCTCCTCCT
CCTCCTTTTCCTCTCCCTGACCACCCTCGTCCTTATTATCCTCTGTCTTC
ATCCTACTACCAC
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protein sequence of jgi.p|Nanoce1779_2|597223

>mRNA_6516-protein ID=mRNA_6516-protein|Name=jgi.p|Nanoce1779_2|597223|organism=Nannochloropsis oceanica|type=polypeptide|length=74bp
MKDRTGPRKGGRGGVEILGFVVVAAVATADPRRSVRFYYFCRGHFECPCM
IFWFARRGLRISCCCCCCCCRRW*
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mRNA from alignment at scaffold_18:66765..67377+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6516 ID=mRNA_6516|Name=jgi.p|Nanoce1779_2|597223|organism=Nannochloropsis oceanica|type=mRNA|length=613bp|location=Sequence derived from alignment at scaffold_18:66765..67377+ (Nannochloropsis oceanica)
GGAGGATTATTATGAAGGACAGGACGGGCCCGAGGAAGGGAGGGAGGGGT
GGGGTTGAGATTCTTGGATTTGTTGTTGTTGCTGCTGTTGCTACTGCTGA
CCCTAGACGGTCGGTGCGCTTCTATTATTTTTGTCGCGGCCACTTTGAAT
GTCCTTGCATGATTTTTTGGTTTGCTCGCAGAGGGCTTAGGATTTCTTGC
TGCTGCTGCTGCTGCTGCTGCAGACGATGGTAGTAGATCGTTTGGCGCAG
AAGTAGGCTTAGTTTTGCGGGAGGCAGGGACGGAGGAATCGATAGAAGGA
GGGTGCTTGACCCGAGGGGATGGTCTTCGACGATGACGGTGAGCACTTCG
GTGGCGCCATCCTTCGTCTTCGTCTTCTACGTCTCTTTCGTCTTCTTGTC
CTTTTCCCACCTCTTCAGCAGCTCGTCGCTGAGTCCGGCGAATAGGCCGT
CGGACTTCCGGTTCCTCTTCTCCTTCACTGCTGCTGCTGTTCGACCATGA
GGATGGAGTATCACGATTACATCTCTCCGCCTCCTCCTCCTCCTCCTCCT
CCTCCTTTTCCTCTCCCTGACCACCCTCGTCCTTATTATCCTCTGTCTTC
ATCCTACTACCAC
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Coding sequence (CDS) from alignment at scaffold_18:66765..67377+

>mRNA_6516 ID=mRNA_6516|Name=jgi.p|Nanoce1779_2|597223|organism=Nannochloropsis oceanica|type=CDS|length=222bp|location=Sequence derived from alignment at scaffold_18:66765..67377+ (Nannochloropsis oceanica)
ATGAAGGACAGGACGGGCCCGAGGAAGGGAGGGAGGGGTGGGGTTGAGAT
TCTTGGATTTGTTGTTGTTGCTGCTGTTGCTACTGCTGACCCTAGACGGT
CGGTGCGCTTCTATTATTTTTGTCGCGGCCACTTTGAATGTCCTTGCATG
ATTTTTTGGTTTGCTCGCAGAGGGCTTAGGATTTCTTGCTGCTGCTGCTG
CTGCTGCTGCAGACGATGGTAG
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Synonyms
Publications