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Properties
| Property Name | Value |
|---|
| TranscriptId | 597308 |
| Track | FilteredModels2 |
| ProteinId | 597222 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_18 | supercontig | scaffold_18:65282..66691 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6515 ID=mRNA_6515|Name=jgi.p|Nanoce1779_2|597222|organism=Nannochloropsis oceanica|type=mRNA|length=1410bp
GAGCAAAACCTCCGCGCCGACAACGCCGCCCTCCGCCTCGCCCTTGCCGA
ACGAGCCTCCCTCCATGAAGCCCTCCTCCTCGTCCACCCTCCCTCCCTCC
CTCCCTCTTCCTCACCCCCCGACTCGGTCGATGAACGCTGCCTCAGGTTG
CTCGAAAATCAGAATTTGCAATTACAAAGACACGTGCAACAACTCAAAGA
TCTCCTGCAGGGGGAGCAGGAGGCAGCGGATGGATTGACCAATCTCTTAT
CCGCTCTCGAGCGAAGAGTGACGGCTCTATTGGAAGATGTAGAGAGAGGA
GGAGGAAGGGAAGGAGGGAGGGATACTCCAGGAGGACGACGACGGTCTTC
TCCGGGAGGGATAGGGAGAGAGGGATGGCTGCAGGAATTCCTGCAGGAGT
TACGTCAGCTGCAGCTGCAGTGGCGGTCGGTGAGGAGGGCTACGCGCATG
TCTCAGGGAGCACAGCGATTGTTTCTGCCCGCGGACGCGTTGGTGTATCT
CAAGAAATCGAGTGAAGGGCGTTATGCTGGAGGGGAAGAGGAAGGGAAGG
AGGATACCACAGCAGGATTGAACGGGGAATGGGAGGACCGCGCGCGAATT
TGGGGCGTGCGAGGAGGTAGCGAGGGAGAAAGGGAGGGAGAGAGGGGAGC
CATGCTATGTGAGTTGGATGGTGATAAAGTCCACGCGCTTCAACGAGCTC
TTCGCTCCCTCGTGAGGAGGCTAAGCACACTTATATCGGAGGATGGCGGG
GAAGGGGAAAGGGTACACGTTCAAGAGCAGGCTCGTGCTCTAGCCCTTGC
AGTAGCGCACCTCGGGGTAGCATTACCCGCTACCTTCTCCTCCTTCCCTT
CCTCCTCCTCCTCCTCTTCCTACTCTGCCTTGCCGGTACGTCCTCTAACT
CGTGAACGGGAGTTACTGGAGGGTTTTGATAGCCTTTTGGTGCCACGTTT
GAAACCTAGTGAGTTGCAACGGCGCGTGCAGAAGCTGCAGCGGAAGGTGC
TGGGAGAGAGAAGGGCATTGATGTGGGGCATTAACAATACGACGGCGAAT
TCAGTGGATGGGCAAGAGGAGGATGACGAGGACGAGGATGAGGAGGAGGA
CGAGGAGGTTGCAAACGAATATACGGCAGCGGCGGGAATGAAATCGTCGC
AGCCGACGTCCAGGACCACGGGGAGAAGGGGGATGGGTGAGCACCGGTAG
CAGCAGTAGCAGAGTAGCAGCAGTAGTAGCTGCTGCCACAGCATCAGCGA
TAATTTCAAAAGCAGTGGGCTGACATCAGGTGGTGGAATGCGATCTTCAT
CATTCAGGCGGCGCCATAACTTCGAAGCTGATTGTTGGGTTACTTATTGA
CGAGTGAATGCACCAAGCATAATGTCAATATGAATACAAAGGCATAACAC
AGTGCGTAGG back to topprotein sequence of jgi.p|Nanoce1779_2|597222 >mRNA_6515-protein ID=mRNA_6515-protein|Name=jgi.p|Nanoce1779_2|597222|organism=Nannochloropsis oceanica|type=polypeptide|length=251bp
MSQGAQRLFLPADALVYLKKSSEGRYAGGEEEGKEDTTAGLNGEWEDRAR
IWGVRGGSEGEREGERGAMLCELDGDKVHALQRALRSLVRRLSTLISEDG
GEGERVHVQEQARALALAVAHLGVALPATFSSFPSSSSSSSYSALPVRPL
TRERELLEGFDSLLVPRLKPSELQRRVQKLQRKVLGERRALMWGINNTTA
NSVDGQEEDDEDEDEEEDEEVANEYTAAAGMKSSQPTSRTTGRRGMGEHR
* back to topmRNA from alignment at scaffold_18:65282..66691- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6515 ID=mRNA_6515|Name=jgi.p|Nanoce1779_2|597222|organism=Nannochloropsis oceanica|type=mRNA|length=1410bp|location=Sequence derived from alignment at scaffold_18:65282..66691- (Nannochloropsis oceanica)
GAGCAAAACCTCCGCGCCGACAACGCCGCCCTCCGCCTCGCCCTTGCCGA
ACGAGCCTCCCTCCATGAAGCCCTCCTCCTCGTCCACCCTCCCTCCCTCC
CTCCCTCTTCCTCACCCCCCGACTCGGTCGATGAACGCTGCCTCAGGTTG
CTCGAAAATCAGAATTTGCAATTACAAAGACACGTGCAACAACTCAAAGA
TCTCCTGCAGGGGGAGCAGGAGGCAGCGGATGGATTGACCAATCTCTTAT
CCGCTCTCGAGCGAAGAGTGACGGCTCTATTGGAAGATGTAGAGAGAGGA
GGAGGAAGGGAAGGAGGGAGGGATACTCCAGGAGGACGACGACGGTCTTC
TCCGGGAGGGATAGGGAGAGAGGGATGGCTGCAGGAATTCCTGCAGGAGT
TACGTCAGCTGCAGCTGCAGTGGCGGTCGGTGAGGAGGGCTACGCGCATG
TCTCAGGGAGCACAGCGATTGTTTCTGCCCGCGGACGCGTTGGTGTATCT
CAAGAAATCGAGTGAAGGGCGTTATGCTGGAGGGGAAGAGGAAGGGAAGG
AGGATACCACAGCAGGATTGAACGGGGAATGGGAGGACCGCGCGCGAATT
TGGGGCGTGCGAGGAGGTAGCGAGGGAGAAAGGGAGGGAGAGAGGGGAGC
CATGCTATGTGAGTTGGATGGTGATAAAGTCCACGCGCTTCAACGAGCTC
TTCGCTCCCTCGTGAGGAGGCTAAGCACACTTATATCGGAGGATGGCGGG
GAAGGGGAAAGGGTACACGTTCAAGAGCAGGCTCGTGCTCTAGCCCTTGC
AGTAGCGCACCTCGGGGTAGCATTACCCGCTACCTTCTCCTCCTTCCCTT
CCTCCTCCTCCTCCTCTTCCTACTCTGCCTTGCCGGTACGTCCTCTAACT
CGTGAACGGGAGTTACTGGAGGGTTTTGATAGCCTTTTGGTGCCACGTTT
GAAACCTAGTGAGTTGCAACGGCGCGTGCAGAAGCTGCAGCGGAAGGTGC
TGGGAGAGAGAAGGGCATTGATGTGGGGCATTAACAATACGACGGCGAAT
TCAGTGGATGGGCAAGAGGAGGATGACGAGGACGAGGATGAGGAGGAGGA
CGAGGAGGTTGCAAACGAATATACGGCAGCGGCGGGAATGAAATCGTCGC
AGCCGACGTCCAGGACCACGGGGAGAAGGGGGATGGGTGAGCACCGGTAG
CAGCAGTAGCAGAGTAGCAGCAGTAGTAGCTGCTGCCACAGCATCAGCGA
TAATTTCAAAAGCAGTGGGCTGACATCAGGTGGTGGAATGCGATCTTCAT
CATTCAGGCGGCGCCATAACTTCGAAGCTGATTGTTGGGTTACTTATTGA
CGAGTGAATGCACCAAGCATAATGTCAATATGAATACAAAGGCATAACAC
AGTGCGTAGG back to topCoding sequence (CDS) from alignment at scaffold_18:65282..66691- >mRNA_6515 ID=mRNA_6515|Name=jgi.p|Nanoce1779_2|597222|organism=Nannochloropsis oceanica|type=CDS|length=753bp|location=Sequence derived from alignment at scaffold_18:65282..66691- (Nannochloropsis oceanica)
ATGTCTCAGGGAGCACAGCGATTGTTTCTGCCCGCGGACGCGTTGGTGTA
TCTCAAGAAATCGAGTGAAGGGCGTTATGCTGGAGGGGAAGAGGAAGGGA
AGGAGGATACCACAGCAGGATTGAACGGGGAATGGGAGGACCGCGCGCGA
ATTTGGGGCGTGCGAGGAGGTAGCGAGGGAGAAAGGGAGGGAGAGAGGGG
AGCCATGCTATGTGAGTTGGATGGTGATAAAGTCCACGCGCTTCAACGAG
CTCTTCGCTCCCTCGTGAGGAGGCTAAGCACACTTATATCGGAGGATGGC
GGGGAAGGGGAAAGGGTACACGTTCAAGAGCAGGCTCGTGCTCTAGCCCT
TGCAGTAGCGCACCTCGGGGTAGCATTACCCGCTACCTTCTCCTCCTTCC
CTTCCTCCTCCTCCTCCTCTTCCTACTCTGCCTTGCCGGTACGTCCTCTA
ACTCGTGAACGGGAGTTACTGGAGGGTTTTGATAGCCTTTTGGTGCCACG
TTTGAAACCTAGTGAGTTGCAACGGCGCGTGCAGAAGCTGCAGCGGAAGG
TGCTGGGAGAGAGAAGGGCATTGATGTGGGGCATTAACAATACGACGGCG
AATTCAGTGGATGGGCAAGAGGAGGATGACGAGGACGAGGATGAGGAGGA
GGACGAGGAGGTTGCAAACGAATATACGGCAGCGGCGGGAATGAAATCGT
CGCAGCCGACGTCCAGGACCACGGGGAGAAGGGGGATGGGTGAGCACCGG
TAG back to top
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