jgi.p|Nanoce1779_2|597216, mRNA_6514 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597216
Unique NamemRNA_6514
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1171
Alignment locationscaffold_18:63762..65291 +

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Properties
Property NameValue
TranscriptId597302
TrackFilteredModels2
ProteinId597216
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:63762..65291 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597216gene_6514Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597216mRNA_6514-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6514CDS_6514Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6514 ID=mRNA_6514|Name=jgi.p|Nanoce1779_2|597216|organism=Nannochloropsis oceanica|type=mRNA|length=1171bp
ACAGAGGAGGCTCGCGCCCAAGGCTAGCCAGCCAGCCAGTTTAAGCGGTA
TCAACGACCGCAGCAACGCCTCAACCGACGTCCATCCGCACCCCAAAAAA
TTACCTTTGGGAGCCGCCCTTTCTTTTCAATAAGGGACGGGCAATTCCGA
GGAGTCATCGGAAGTATTTTTCGATGCTCCTTAATTCGCCCTTGTGACTG
TCCACCTCCAATAGCAAAAAACGACATCATAGTGCATACAGGTGGCACGG
TCCTTTTTCGGAAGGCGGGCATACCCCTATATGACCTATTTTCACTCTCC
TCCCCCCTACCATGAACGCCAACGCCGGCTCTGCTGCGGTGCCCACACCC
TCAACAATCTCTTTCAATACAAATGGGTCGACTCGTCCGCCATGGACGCG
CTTGCCACCTCTCTGGCTGTTGCTGACCAAGAAGAGCAAAGCAACAGCAC
CGGCAGCACTGATCACGAGAGAGGGTGGTGGCCAGGCATCGTGGCTGCTG
CCTCGTCTCATTCCAGACTTTACAAGAGTCTGATTCCCGGGTTGGGTAGT
TATGATGTGTCGGTGTTGGTGGAGGCATTGAAACAAAAAAAGGCGAAGTT
TGCGATGCACTTATTGGGAAATCAACAGTTGGAAAAAGACTTGACTGCAT
TAAGTGATCGACTTTCCAGGGAAGGAGGGAAGGAGAGAGGGAAAGACAGA
ACAGTAGGCATTATATTGAATAGAATGTCGCGGAATGTGACGCTGCGGTG
GTTGTTGGACGGGAGGCATTGGCTGGCGCTTGTTCCTCGGTCTTCCTCCT
CTTCAACAGCAGCAGCGGGAGCAGCAGCAGCAACAGCAACTATAGAAGCA
GGAGAAGTAGCATGGTGGGACGTGGACTCTAAACTTCCGGCGCCAATGTT
GATAGGTGGAGTACCCCAGCTGCTGATTTACCTTAGGAAGAACATTCTGG
AAGAGGGAGGACAGGCGTTCGTGGTTACGGAGGACGAAAAGGAGGAAGAG
GAGGACGAGGAGCAGAGGGAGGAGGAGGAGAAAGAAGAGGAGGACGGGAA
TTAAGGATTAAGGGAGAAAAAGATTGAAGGGAATAGCAAGGAAGAGTGTG
TAAAGAAACAATTGTGAATAAATGGAGACGAAAGAAAATTTTAGCCATAA
TTTGGCGATGCCCTACGCACT
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protein sequence of jgi.p|Nanoce1779_2|597216

>mRNA_6514-protein ID=mRNA_6514-protein|Name=jgi.p|Nanoce1779_2|597216|organism=Nannochloropsis oceanica|type=polypeptide|length=258bp
MTYFHSPPPYHERQRRLCCGAHTLNNLFQYKWVDSSAMDALATSLAVADQ
EEQSNSTGSTDHERGWWPGIVAAASSHSRLYKSLIPGLGSYDVSVLVEAL
KQKKAKFAMHLLGNQQLEKDLTALSDRLSREGGKERGKDRTVGIILNRMS
RNVTLRWLLDGRHWLALVPRSSSSSTAAAGAAAATATIEAGEVAWWDVDS
KLPAPMLIGGVPQLLIYLRKNILEEGGQAFVVTEDEKEEEEDEEQREEEE
KEEEDGN*
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mRNA from alignment at scaffold_18:63762..65291+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6514 ID=mRNA_6514|Name=jgi.p|Nanoce1779_2|597216|organism=Nannochloropsis oceanica|type=mRNA|length=1530bp|location=Sequence derived from alignment at scaffold_18:63762..65291+ (Nannochloropsis oceanica)
ACAGAGGAGGCTCGCGCCCAAGGCTAGCCAGCCAGCCAGTTTAAGCGGTA
TCAACGACCGCAGCAACGCCTCAACCGACGTCCATCCGCACCCCAAAAAA
TGTGCGTTCCTCCCCATACCACCTGTCGTGCCTTGCATGCCTTCGGCCCT
CCCTTCTCCATTTCCTTGTTCAATGAAAATAAACCATCGCCCCTATGCCT
TTCTTTGCATCTCTAGTGCCCCCCCCTGCGCGCTTTCGCCCTACTCCCCA
CCCACGCATGCCCTCCGAACCACCAACCCGACGGAGGATCAACAGTACCT
TTGGGAGCCGCCCTTTCTTTTCAATAAGGGACGGGCAATTCCGAGGAGTC
ATCGGAAGTATTTTTCGATGCTCCTTAATTCGCCCTTGTGACTGTCCACC
TCCAATAGCAAAAAACGACATCATAGTGCATACAGGTGGCACGGTCCTTT
TTCGGAAGGCGGGCATACCCCTGTGAGTCTCCATTTAGTCGCGACAATTC
TTGCCCGTTTATAAAATTTGAGAGTCTGCGTAGATTAAAAAATAGTCCAA
CCTGGTGATTCACTTTCCTTCGCTCTCCACGCATGCATTTAACTGACCTC
AAAAGCTCTCTCGTTCTCCCTATATTTCATTCCGCAGATATGACCTATTT
TCACTCTCCTCCCCCCTACCATGAACGCCAACGCCGGCTCTGCTGCGGTG
CCCACACCCTCAACAATCTCTTTCAATACAAATGGGTCGACTCGTCCGCC
ATGGACGCGCTTGCCACCTCTCTGGCTGTTGCTGACCAAGAAGAGCAAAG
CAACAGCACCGGCAGCACTGATCACGAGAGAGGGTGGTGGCCAGGCATCG
TGGCTGCTGCCTCGTCTCATTCCAGACTTTACAAGAGTCTGATTCCCGGG
TTGGGTAGTTATGATGTGTCGGTGTTGGTGGAGGCATTGAAACAAAAAAA
GGCGAAGTTTGCGATGCACTTATTGGGAAATCAACAGTTGGAAAAAGACT
TGACTGCATTAAGTGATCGACTTTCCAGGGAAGGAGGGAAGGAGAGAGGG
AAAGACAGAACAGTAGGCATTATATTGAATAGAATGTCGCGGAATGTGAC
GCTGCGGTGGTTGTTGGACGGGAGGCATTGGCTGGCGCTTGTTCCTCGGT
CTTCCTCCTCTTCAACAGCAGCAGCGGGAGCAGCAGCAGCAACAGCAACT
ATAGAAGCAGGAGAAGTAGCATGGTGGGACGTGGACTCTAAACTTCCGGC
GCCAATGTTGATAGGTGGAGTACCCCAGCTGCTGATTTACCTTAGGAAGA
ACATTCTGGAAGAGGGAGGACAGGCGTTCGTGGTTACGGAGGACGAAAAG
GAGGAAGAGGAGGACGAGGAGCAGAGGGAGGAGGAGGAGAAAGAAGAGGA
GGACGGGAATTAAGGATTAAGGGAGAAAAAGATTGAAGGGAATAGCAAGG
AAGAGTGTGTAAAGAAACAATTGTGAATAAATGGAGACGAAAGAAAATTT
TAGCCATAATTTGGCGATGCCCTACGCACT
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Coding sequence (CDS) from alignment at scaffold_18:63762..65291+

>mRNA_6514 ID=mRNA_6514|Name=jgi.p|Nanoce1779_2|597216|organism=Nannochloropsis oceanica|type=CDS|length=774bp|location=Sequence derived from alignment at scaffold_18:63762..65291+ (Nannochloropsis oceanica)
ATGACCTATTTTCACTCTCCTCCCCCCTACCATGAACGCCAACGCCGGCT
CTGCTGCGGTGCCCACACCCTCAACAATCTCTTTCAATACAAATGGGTCG
ACTCGTCCGCCATGGACGCGCTTGCCACCTCTCTGGCTGTTGCTGACCAA
GAAGAGCAAAGCAACAGCACCGGCAGCACTGATCACGAGAGAGGGTGGTG
GCCAGGCATCGTGGCTGCTGCCTCGTCTCATTCCAGACTTTACAAGAGTC
TGATTCCCGGGTTGGGTAGTTATGATGTGTCGGTGTTGGTGGAGGCATTG
AAACAAAAAAAGGCGAAGTTTGCGATGCACTTATTGGGAAATCAACAGTT
GGAAAAAGACTTGACTGCATTAAGTGATCGACTTTCCAGGGAAGGAGGGA
AGGAGAGAGGGAAAGACAGAACAGTAGGCATTATATTGAATAGAATGTCG
CGGAATGTGACGCTGCGGTGGTTGTTGGACGGGAGGCATTGGCTGGCGCT
TGTTCCTCGGTCTTCCTCCTCTTCAACAGCAGCAGCGGGAGCAGCAGCAG
CAACAGCAACTATAGAAGCAGGAGAAGTAGCATGGTGGGACGTGGACTCT
AAACTTCCGGCGCCAATGTTGATAGGTGGAGTACCCCAGCTGCTGATTTA
CCTTAGGAAGAACATTCTGGAAGAGGGAGGACAGGCGTTCGTGGTTACGG
AGGACGAAAAGGAGGAAGAGGAGGACGAGGAGCAGAGGGAGGAGGAGGAG
AAAGAAGAGGAGGACGGGAATTAA
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Synonyms
Publications