jgi.p|Nanoce1779_2|597214, mRNA_6513 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597214
Unique NamemRNA_6513
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1093
Alignment locationscaffold_18:62308..63495 -

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Properties
Property NameValue
TranscriptId597300
TrackFilteredModels2
ProteinId597214
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:62308..63495 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597214gene_6513Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597214mRNA_6513-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6513CDS_6513Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6513 ID=mRNA_6513|Name=jgi.p|Nanoce1779_2|597214|organism=Nannochloropsis oceanica|type=mRNA|length=1093bp
ACAGAACAGAATCCCCTTTCCTTGCCCCAGCTCCCGCCATGAAGGCCTCC
CTCTATCTCGTCCTCGCGACGCTCTTCCTAGCATGCTGCTTCACGACGTT
TGCCTTTGTGGGTCACTCCGCCTTGCCATCAACCAGGATCTCCACGGTAT
TAACAGCAATTCGCGCGACGCGCACCCGTGGCGTCATGACCGCTGGGCTC
TTCGATGGCCTCTTTTTGTCGGACACCGAGAAGGAGGATGCGTACCAAAA
GCAGCAAGAAATTCTGCGCGCCCGTCAAAACCCAGAAAAACAAAAGGCGT
ACTTTCAAGAGGTGAACAAGCGCCGAGCGACCGCCAGTCAAAATTTCAAG
GAGAAATTTAACCTGTCCAAGAACGGGCAACAGGACCCAGCCGTCAAATG
GATGGAGTTGAGGAAGAAAGGCGTGATAGGGGAACGGGAGAAGTACGAGC
AGTACGGGGAGACGAATAGGGGCATCATTATTCCTCAGGTCCCCTTCGGC
AATACTAAGTACGACGAGGGCGAGCGGTTCGACTTGCGTCTGCCTTATGT
GGATGAGGGATACGTAGATGAATCTGCCAGCTTGGGGAATACCTTGAAAC
GATTGTTTGGCTTTGGAAAGGAGTCGAAACCCACGACGCTACCGCAGGGC
CCCGGATCGGATGGGCCAGGCGCCGCGAGAGGAAAGGGGAAAAGTGGGTA
TGGTGGAGGGAAGAAGAAGTAGATAGCAGCAGGAGGGGCTGCAAGTACAT
CTTAGAAATATAGCGAGTCAAAGGAACAGAAGAGAGGTGCCTTGTGAAGA
GAGGTGCCTTGTGAAGGTGTGGGCGGTGTGTTGGCATGCGGGAGGAGCAG
TAGTAGCCAAGGGTTGTTATTTATTGTGTGTTGCGTTTAGTTTTCATTCT
TTTTATTTCATTTTGTTACATATTGCCAGTGGCGGGAAAAGGAAGGGAAA
AGAACAATCGTACCAACCCCGAATCAAACCTTCGCTCTCACGTTGCCTCT
CGCTTTTCCTTCTCCCTATTACCACTGCTGCTGCTGCTGCTGCTAGTACT
ACTACTCCTCGCAGCCATAAACTCCTCCCCTCTTGTCACAATC
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protein sequence of jgi.p|Nanoce1779_2|597214

>mRNA_6513-protein ID=mRNA_6513-protein|Name=jgi.p|Nanoce1779_2|597214|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp
MKASLYLVLATLFLACCFTTFAFVGHSALPSTRISTVLTAIRATRTRGVM
TAGLFDGLFLSDTEKEDAYQKQQEILRARQNPEKQKAYFQEVNKRRATAS
QNFKEKFNLSKNGQQDPAVKWMELRKKGVIGEREKYEQYGETNRGIIIPQ
VPFGNTKYDEGERFDLRLPYVDEGYVDESASLGNTLKRLFGFGKESKPTT
LPQGPGSDGPGAARGKGKSGYGGGKKK*
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mRNA from alignment at scaffold_18:62308..63495-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6513 ID=mRNA_6513|Name=jgi.p|Nanoce1779_2|597214|organism=Nannochloropsis oceanica|type=mRNA|length=1188bp|location=Sequence derived from alignment at scaffold_18:62308..63495- (Nannochloropsis oceanica)
ACAGAACAGAATCCCCTTTCCTTGCCCCAGCTCCCGCCATGAAGGCCTCC
CTCTATCTCGTCCTCGCGACGCTCTTCCTAGCATGCTGCTTCACGACGTT
TGCCTTTGTGGGTCACTCCGCCTTGCCATCAACCAGGATCTCCACGGTAT
TAACAGCAATTCGCGCGACGCGCACCCGTGGCGTCATGACCGCTGGGCTC
TTCGATGGCCTCTTTTTGTCGGACACCGAGAAGGAGGATGCGTACCAAAA
GCAGCAAGAAATTCTGCGCGCCCGTCAAAACCCAGAAAAACAAAAGGCGT
ACTTTCAAGAGGTGAACAAGCGCCGAGCGACCGCCAGTCAAAATTTCAAG
GAGAAATTTAACCTGTCCAAGAACGGGCAACAGGACCCAGCCGTCAAATG
GATGGAGTTGAGGAAGAAAGGCGTGATAGGGGAACGGGAGAAGTACGAGC
AGTACGGGGAGACGAATAGGGGCATCATTATTCCTCAGGTACATTGTTGT
ACGAAATTTGGACCACCTTCACAGTCCCATGTGCGCATTATCTCCCTTCC
TTCTTTCTCCCTCCTCTCTCCCTCCCCTTGCAGGTCCCCTTCGGCAATAC
TAAGTACGACGAGGGCGAGCGGTTCGACTTGCGTCTGCCTTATGTGGATG
AGGGATACGTAGATGAATCTGCCAGCTTGGGGAATACCTTGAAACGATTG
TTTGGCTTTGGAAAGGAGTCGAAACCCACGACGCTACCGCAGGGCCCCGG
ATCGGATGGGCCAGGCGCCGCGAGAGGAAAGGGGAAAAGTGGGTATGGTG
GAGGGAAGAAGAAGTAGATAGCAGCAGGAGGGGCTGCAAGTACATCTTAG
AAATATAGCGAGTCAAAGGAACAGAAGAGAGGTGCCTTGTGAAGAGAGGT
GCCTTGTGAAGGTGTGGGCGGTGTGTTGGCATGCGGGAGGAGCAGTAGTA
GCCAAGGGTTGTTATTTATTGTGTGTTGCGTTTAGTTTTCATTCTTTTTA
TTTCATTTTGTTACATATTGCCAGTGGCGGGAAAAGGAAGGGAAAAGAAC
AATCGTACCAACCCCGAATCAAACCTTCGCTCTCACGTTGCCTCTCGCTT
TTCCTTCTCCCTATTACCACTGCTGCTGCTGCTGCTGCTAGTACTACTAC
TCCTCGCAGCCATAAACTCCTCCCCTCTTGTCACAATC
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Coding sequence (CDS) from alignment at scaffold_18:62308..63495-

>mRNA_6513 ID=mRNA_6513|Name=jgi.p|Nanoce1779_2|597214|organism=Nannochloropsis oceanica|type=CDS|length=1368bp|location=Sequence derived from alignment at scaffold_18:62308..63495- (Nannochloropsis oceanica)
GTCCCCTTCGGCAATACTAAGTACGACGAGGGCGAGCGGTTCGACTTGCG
TCTGCCTTATGTGGATGAGGGATACGTAGATGAATCTGCCAGCTTGGGGA
ATACCTTGAAACGATTGTTTGGCTTTGGAAAGGAGTCGAAACCCACGACG
CTACCGCAGGGCCCCGGATCGGATGGGCCAGGCGCCGCGAGAGGAAAGGG
GAAAAGTGGGTATGGTGGAGGGAAGAAGAAGTAGATGAAGGCCTCCCTCT
ATCTCGTCCTCGCGACGCTCTTCCTAGCATGCTGCTTCACGACGTTTGCC
TTTGTGGGTCACTCCGCCTTGCCATCAACCAGGATCTCCACGGTATTAAC
AGCAATTCGCGCGACGCGCACCCGTGGCGTCATGACCGCTGGGCTCTTCG
ATGGCCTCTTTTTGTCGGACACCGAGAAGGAGGATGCGTACCAAAAGCAG
CAAGAAATTCTGCGCGCCCGTCAAAACCCAGAAAAACAAAAGGCGTACTT
TCAAGAGGTGAACAAGCGCCGAGCGACCGCCAGTCAAAATTTCAAGGAGA
AATTTAACCTGTCCAAGAACGGGCAACAGGACCCAGCCGTCAAATGGATG
GAGTTGAGGAAGAAAGGCGTGATAGGGGAACGGGAGAAGTACGAGCAGTA
CGGGGAGACGAATAGGGGCATCATTATTCCTCAGGTCCCCTTCGGCAATA
CTAAGTACGACGAGGGCGAGCGGTTCGACTTGCGTCTGCCTTATGTGGAT
GAGGGATACGTAGATGAATCTGCCAGCTTGGGGAATACCTTGAAACGATT
GTTTGGCTTTGGAAAGGAGTCGAAACCCACGACGCTACCGCAGGGCCCCG
GATCGGATGGGCCAGGCGCCGCGAGAGGAAAGGGGAAAAGTGGGTATGGT
GGAGGGAAGAAGAAGTAGATGAAGGCCTCCCTCTATCTCGTCCTCGCGAC
GCTCTTCCTAGCATGCTGCTTCACGACGTTTGCCTTTGTGGGTCACTCCG
CCTTGCCATCAACCAGGATCTCCACGGTATTAACAGCAATTCGCGCGACG
CGCACCCGTGGCGTCATGACCGCTGGGCTCTTCGATGGCCTCTTTTTGTC
GGACACCGAGAAGGAGGATGCGTACCAAAAGCAGCAAGAAATTCTGCGCG
CCCGTCAAAACCCAGAAAAACAAAAGGCGTACTTTCAAGAGGTGAACAAG
CGCCGAGCGACCGCCAGTCAAAATTTCAAGGAGAAATTTAACCTGTCCAA
GAACGGGCAACAGGACCCAGCCGTCAAATGGATGGAGTTGAGGAAGAAAG
GCGTGATAGGGGAACGGGAGAAGTACGAGCAGTACGGGGAGACGAATAGG
GGCATCATTATTCCTCAG
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Synonyms
Publications