jgi.p|Nanoce1779_2|597213, mRNA_6512 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597213
Unique NamemRNA_6512
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length938
Alignment locationscaffold_18:61380..62441 +

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Properties
Property NameValue
TranscriptId597299
TrackFilteredModels2
ProteinId597213
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:61380..62441 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597213gene_6512Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597213mRNA_6512-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6512CDS_6512Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6512 ID=mRNA_6512|Name=jgi.p|Nanoce1779_2|597213|organism=Nannochloropsis oceanica|type=mRNA|length=938bp
AGACGCGCCTGGCGGTGGCGGTGCAGTCGCCGGTCCCTAAACTACATAGC
CATCCGATTCTCAGGCCAAGAAGTTACCTCCCCACCCGATCCCCTGCTTC
GTCATCATGCCAAACCCTAGTCCACTGCAGCTCCTTTTGCTCCTGGTAAC
CATATCCCTGGCCCTGCCGACAGCACTTGGCTTTATTCCACCAGCCAGCA
CAAGTACAGATGGATGCACAAGCATTATAGCAAGAAGAAGAGCCCAAAAA
TGTGTGGCCGCCCTCCCTTCTCTCACCACCCCAACGCCGGTCTCTCCCTC
GGCCCCGCTCCTAACCCAAGAGGAAATCGACACTTGCGCTGCGTCTTTTG
GCCTTGAACTCCGTCTTTCAAGCTTTGGCCCTTTCTATCGAATCATTGCC
CGGTTAATAGATGATACCGAGGGCAGTGAACCCATTGCTTACACTTCCGG
CTTTGTCGCCCCCTTATTCAATCTCGTGCATTTGGACACCATGGAGGTTC
GCCGCCGGTACTGGAAACAACTCGAAGGCAGCAAAAAATTTCCCTATGGA
TGCGGGCTCCTCCTAGGTGCGGCCGCCATGCGTCACGCCTATGAGAAAGG
CTGCAAGAAAGCAGAGCTTTTGGCCATCAATGACGACGAGAAAAGCCATC
AGTTATTGTTAGGGTTTTATCGGACTGCTGGGTTTGTGGTCGTGAAGGAG
GTGACGAACGATATCAGTTGTGTGCCCGATTTGTTGGTTTGGGGTGGAAT
AGGCACACGGATGGATATGCCCGTTGAAGATTACTTGAGAAGATGGCGGA
GCGTGATTGTGACAAGAGGGGAGGAGTTTATGGCTGCGAGGAGTAGTAGT
ACTAGCAGCAGCAGCAGCAGCAGTGGTAATAGGGAGAAGGAAAAGCGAGA
GGCAACGTGAGAGCGAAGGTTTGATTCGGGGTTGGTAC
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protein sequence of jgi.p|Nanoce1779_2|597213

>mRNA_6512-protein ID=mRNA_6512-protein|Name=jgi.p|Nanoce1779_2|597213|organism=Nannochloropsis oceanica|type=polypeptide|length=268bp
MPNPSPLQLLLLLVTISLALPTALGFIPPASTSTDGCTSIIARRRAQKCV
AALPSLTTPTPVSPSAPLLTQEEIDTCAASFGLELRLSSFGPFYRIIARL
IDDTEGSEPIAYTSGFVAPLFNLVHLDTMEVRRRYWKQLEGSKKFPYGCG
LLLGAAAMRHAYEKGCKKAELLAINDDEKSHQLLLGFYRTAGFVVVKEVT
NDISCVPDLLVWGGIGTRMDMPVEDYLRRWRSVIVTRGEEFMAARSSSTS
SSSSSSGNREKEKREAT*
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mRNA from alignment at scaffold_18:61380..62441+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6512 ID=mRNA_6512|Name=jgi.p|Nanoce1779_2|597213|organism=Nannochloropsis oceanica|type=mRNA|length=1062bp|location=Sequence derived from alignment at scaffold_18:61380..62441+ (Nannochloropsis oceanica)
AGACGCGCCTGGCGGTGGCGGTGCAGTCGCCGGTCCCTAAACTACATAGC
CATCCGATTCTCAGGCCAAGAAGTTACCTCCCCACCCGATCCCCTGCTTC
GTCATCATGCCAAACCCTAGTCCACTGCAGCTCCTTTTGCTCCTGGTAAC
CATATCCCTGGCCCTGCCGACAGCACTTGGCTTTATTCCACCAGCCAGCA
CAAGTACAGATGGATGCACAAGCATTATAGCAAGAAGAAGAGCCCAAAAA
TGTGTGGCCGCCCTCCCTTCTCTCACCACCCCAACGCCGGTCTCTCCCTC
GGCCCCGCTCCTAACCCAAGAGGAAATCGACACTTGCGCTGCGTCTTTTG
GCCTTGAACTCCGTCTTTCAAGCTTTGGCCCTTTCTATCGAATCATTGCC
CGGTTAATAGATGATACCGAGGGCAGTGAACCCATTGCTTACACTTCCGG
CTTTGTCGCCCCCTTATTCAATCTCGTGCATTTGGACACCATGGAGGTAA
CGAGGGAGAGAGGTTAGCGAAGGGCTGAGAAATGCGAGAGTCGTGTATCC
ATTCTGGGGGTATGCCAGAAGAGTATGCCTCTCCGACTTATTTACTACCT
CATTCCATCCCCACCATTAGGTTCGCCGCCGGTACTGGAAACAACTCGAA
GGCAGCAAAAAATTTCCCTATGGATGCGGGCTCCTCCTAGGTGCGGCCGC
CATGCGTCACGCCTATGAGAAAGGCTGCAAGAAAGCAGAGCTTTTGGCCA
TCAATGACGACGAGAAAAGCCATCAGTTATTGTTAGGGTTTTATCGGACT
GCTGGGTTTGTGGTCGTGAAGGAGGTGACGAACGATATCAGTTGTGTGCC
CGATTTGTTGGTTTGGGGTGGAATAGGCACACGGATGGATATGCCCGTTG
AAGATTACTTGAGAAGATGGCGGAGCGTGATTGTGACAAGAGGGGAGGAG
TTTATGGCTGCGAGGAGTAGTAGTACTAGCAGCAGCAGCAGCAGCAGTGG
TAATAGGGAGAAGGAAAAGCGAGAGGCAACGTGAGAGCGAAGGTTTGATT
CGGGGTTGGTAC
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Coding sequence (CDS) from alignment at scaffold_18:61380..62441+

>mRNA_6512 ID=mRNA_6512|Name=jgi.p|Nanoce1779_2|597213|organism=Nannochloropsis oceanica|type=CDS|length=1608bp|location=Sequence derived from alignment at scaffold_18:61380..62441+ (Nannochloropsis oceanica)
ATGCCAAACCCTAGTCCACTGCAGCTCCTTTTGCTCCTGGTAACCATATC
CCTGGCCCTGCCGACAGCACTTGGCTTTATTCCACCAGCCAGCACAAGTA
CAGATGGATGCACAAGCATTATAGCAAGAAGAAGAGCCCAAAAATGTGTG
GCCGCCCTCCCTTCTCTCACCACCCCAACGCCGGTCTCTCCCTCGGCCCC
GCTCCTAACCCAAGAGGAAATCGACACTTGCGCTGCGTCTTTTGGCCTTG
AACTCCGTCTTTCAAGCTTTGGCCCTTTCTATCGAATCATTGCCCGGTTA
ATAGATGATACCGAGGGCAGTGAACCCATTGCTTACACTTCCGGCTTTGT
CGCCCCCTTATTCAATCTCGTGCATTTGGACACCATGGAGGTTCGCCGCC
GGTACTGGAAACAACTCGAAGGCAGCAAAAAATTTCCCTATGGATGCGGG
CTCCTCCTAGGTGCGGCCGCCATGCGTCACGCCTATGAGAAAGGCTGCAA
GAAAGCAGAGCTTTTGGCCATCAATGACGACGAGAAAAGCCATCAGTTAT
TGTTAGGGTTTTATCGGACTGCTGGGTTTGTGGTCGTGAAGGAGGTGACG
AACGATATCAGTTGTGTGCCCGATTTGTTGGTTTGGGGTGGAATAGGCAC
ACGGATGGATATGCCCGTTGAAGATTACTTGAGAAGATGGCGGAGCGTGA
TTGTGACAAGAGGGGAGGAGTTTATGGCTGCGAGGAGTAGTAGTACTAGC
AGCAGCAGCAGCAGCAGTGGTAATAGGGAGAAGGAAAAGCGAGAGGCAAC
GTGAATGCCAAACCCTAGTCCACTGCAGCTCCTTTTGCTCCTGGTAACCA
TATCCCTGGCCCTGCCGACAGCACTTGGCTTTATTCCACCAGCCAGCACA
AGTACAGATGGATGCACAAGCATTATAGCAAGAAGAAGAGCCCAAAAATG
TGTGGCCGCCCTCCCTTCTCTCACCACCCCAACGCCGGTCTCTCCCTCGG
CCCCGCTCCTAACCCAAGAGGAAATCGACACTTGCGCTGCGTCTTTTGGC
CTTGAACTCCGTCTTTCAAGCTTTGGCCCTTTCTATCGAATCATTGCCCG
GTTAATAGATGATACCGAGGGCAGTGAACCCATTGCTTACACTTCCGGCT
TTGTCGCCCCCTTATTCAATCTCGTGCATTTGGACACCATGGAGGTTCGC
CGCCGGTACTGGAAACAACTCGAAGGCAGCAAAAAATTTCCCTATGGATG
CGGGCTCCTCCTAGGTGCGGCCGCCATGCGTCACGCCTATGAGAAAGGCT
GCAAGAAAGCAGAGCTTTTGGCCATCAATGACGACGAGAAAAGCCATCAG
TTATTGTTAGGGTTTTATCGGACTGCTGGGTTTGTGGTCGTGAAGGAGGT
GACGAACGATATCAGTTGTGTGCCCGATTTGTTGGTTTGGGGTGGAATAG
GCACACGGATGGATATGCCCGTTGAAGATTACTTGAGAAGATGGCGGAGC
GTGATTGTGACAAGAGGGGAGGAGTTTATGGCTGCGAGGAGTAGTAGTAC
TAGCAGCAGCAGCAGCAGCAGTGGTAATAGGGAGAAGGAAAAGCGAGAGG
CAACGTGA
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Synonyms
Publications