jgi.p|Nanoce1779_2|672422, mRNA_6510 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|672422
Unique NamemRNA_6510
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1928
Alignment locationscaffold_18:57279..59371 +

Link to JBrowse

Properties
Property NameValue
TranscriptId672508
TrackFilteredModels2
ProteinId672422
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:57279..59371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672422gene_6510Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672422mRNA_6510-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6510CDS_6510Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6510 ID=mRNA_6510|Name=jgi.p|Nanoce1779_2|672422|organism=Nannochloropsis oceanica|type=mRNA|length=1928bp
AGGTTTTACGCATTATGGAAGATAACGAGGACATGAAAGGCAGCATCAGT
TGCCATGTCAGCGCCAGCGGTGCCCGCAGCAGCAGCCAGAAACGACAGCG
CTGTACCAGTACATTTACTCCGTCCGCCGCTCCCGTCATCGGCGGCGTTT
TTCTCCCCACGGCCGAGTCTCTGCGGATCCTGGGTGTGAACGACATGGTC
GACGGCGCCATTGCTCTGCAACAACGGCAGCAAGAGGAGCAACATCACAA
TCATCAAGAACAACAGCGGCAGTCTTGGTCCTTGCAAAGTATGCGAGACT
GGCGAGCGAAGGCCTTTGCCGGTGAGCCGAACAGGCAATTTGTCCAGCAG
CAGCAGCGGGATTTACGACGCATGCTGCTTCACAACAACAAACTGTCTAG
TCCAACGAACAGAGCAGCAGGAGGTCAAGCAGAAGAACGAGGAGGAAGGG
CAGGAGAAGGAGGCGATCATTGTGATGGGGGCTCATGATATGTCTCGAAC
GGCATGCGTTTACTTCCGCGAATGCGGCACTCTATTTGTATGGCGGAGTG
GTCGCCAATTAACGGCTCGACCGATTTACTGACGGGGAGGAGACCGAAAT
AGCACGGCGTGCCACATGGGATAGAGGTGTTAAATGGCCTCGATAGCCAT
TGGGAAATCTACCTGGGAGGAATCCTAAAGCTGCGCTTATTGAATGCAAG
CGGCCAGAAGTGAGGGGCAAAGTTATCAGCAGCAGGCCCACCACATCTCC
TCCTTCCATTCCCACCACCACTATCACCACCCACAGGATTGCTCTAGAAA
CGATCACGCAACAGCGAGGAGAAGCGCGCAGGCACCTGGCGATATGCCTC
TGGAAGGGAGGGCCTACTCCCCAACCCCCAAAGAAGAGGACAGGGAGGGA
GGGAGGAGAGAGGGAGGGGAATATGGAAGGAAGCAACGAGGTCGCAGCCC
CAAACGTAGAGGTAGTCTTAGTGACCAGCACCGGTCGCCGTACTACCACG
ATAGGGGGTAAGCTTCGAGGAGCACCAGCGGCAGCAGCAGCAGCAGCAAA
AGAAGAAAGAGGAGGAGGATGACCACCGACATCATTATTCCACTTCTTTA
AGAGTAGTGGTTATGGTAGAGGAACAGCAGCAGCAGCGCGAGCAGCAGCG
GCGGCGTTGCAGCAATCACCATCAGCAGCAGCAGCAGCAGCAGTGCCAGC
AGCATCCGAACAACCTTTGCGACAAGGAAAAGCCGCATTTCGATTACCAC
CATCACCACCACAATCATCATCATCATAATCAACAGCAACGGCGAGAGCA
GCAGCAGAAGTATTCTCGAAACCATCATCGAGGGCGGGAGCGTGGAGAAA
GGGAGGAGAGGGAAGGGGAGAGGATAGAAAGAGAGGATAGTTGTGGTAAA
GGAAAAGAAAAAGGAGAAGGAGGAGCAGACGGAGGAGAAGGAAGAAATAG
GGAACGAAGAGAAGAAAGACATACCAGGAATAGAAGGAAGAAGGATAAAC
AAAAGAGAAGGAAGGCGAGGAAGAAGGAGAAAGAGGAGAACGGGCATCAT
GTGGAGAAGAAGCACAGTCACAGTGAGAGGCAGGTCACTTCATCACCTGC
TACCGTCGTTGCTGCGGCTGCTACGCCTGGAAATAAAAAAGAGAAGAAGA
TACAGGAAACGGACTCGTCCCCGAGCAGGTTCAAATGGGCCATGAAAGAG
GTAGGCAAGCCCCACGAGCACGAGCACACAAAAAGTCAAAAGATAGGTGA
CGGCAAGAAAAAGAAACGGAGCATCTTACTCAGTTTCGGAGAAGAAATTG
CCGATGAAGAGGTAGGAGCAGTGCAAAAGAAGGCGAACCTTGACAGGGTG
ACAGCACAGCGAATAAAAGCGGAACGCATCGAAGCCATGCGTCTTTCGGG
TAACGCTGCCGCCGCTGCTGCTGCAGCT
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protein sequence of jgi.p|Nanoce1779_2|672422

>mRNA_6510-protein ID=mRNA_6510-protein|Name=jgi.p|Nanoce1779_2|672422|organism=Nannochloropsis oceanica|type=polypeptide|length=272bp
MVEEQQQQREQQRRRCSNHHQQQQQQQCQQHPNNLCDKEKPHFDYHHHHH
NHHHHNQQQRREQQQKYSRNHHRGRERGEREEREGERIEREDSCGKGKEK
GEGGADGGEGRNRERREERHTRNRRKKDKQKRRKARKKEKEENGHHVEKK
HSHSERQVTSSPATVVAAAATPGNKKEKKIQETDSSPSRFKWAMKEVGKP
HEHEHTKSQKIGDGKKKKRSILLSFGEEIADEEVGAVQKKANLDRVTAQR
IKAERIEAMRLSGNAAAAAAAA
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mRNA from alignment at scaffold_18:57279..59371+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6510 ID=mRNA_6510|Name=jgi.p|Nanoce1779_2|672422|organism=Nannochloropsis oceanica|type=mRNA|length=2093bp|location=Sequence derived from alignment at scaffold_18:57279..59371+ (Nannochloropsis oceanica)
AGGTTTTACGCATTATGGAAGATAACGAGGACATGAAAGGCAGCATCAGT
TGCCATGTCAGCGCCAGCGGTGCCCGCAGCAGCAGCCAGAAACGACAGGT
ATGTATAAGTAGAGGGAGGAGGTCATGACGTGTGTCTGTTACCACACGGT
CTGCTTTCGACCAACACGCGCGCTTATCGACCCCATATATGCCACACCAA
CACAGCGCTGTACCAGTACATTTACTCCGTCCGCCGCTCCCGTCATCGGC
GGCGTTTTTCTCCCCACGGCCGAGTCTCTGCGGATCCTGGGTGTGAACGA
CATGGTCGACGGCGCCATTGCTCTGCAACAACGGCAGCAAGAGGAGCAAC
ATCACAATCATCAAGAACAACAGCGGCAGTCTTGGTCCTTGCAAAGTATG
CGAGACTGGCGAGCGAAGGCCTTTGCCGGTGAGCCGAACAGGCAATTTGT
CCAGCAGCAGCAGCGGGATTTACGACGCATGCTGCTTCACAACAACAAAC
TGTCTAGTCCAACGAACAGAGCAGCAGGAGGTCAAGCAGAAGAACGAGGA
GGAAGGGCAGGAGAAGGAGGCGATCATTGTGATGGGGGCTCATGATATGT
CTCGAACGGCATGCGTTTACTTCCGCGAATGCGGCACTCTATTTGTATGG
CGGAGTGGTCGCCAATTAACGGCTCGACCGATTTACTGACGGGGAGGAGA
CCGAAATAGCACGGCGTGCCACATGGGATAGAGGTGTTAAATGGCCTCGA
TAGCCATTGGGAAATCTACCTGGGAGGAATCCTAAAGCTGCGCTTATTGA
ATGCAAGCGGCCAGAAGTGAGGGGCAAAGTTATCAGCAGCAGGCCCACCA
CATCTCCTCCTTCCATTCCCACCACCACTATCACCACCCACAGGATTGCT
CTAGAAACGATCACGCAACAGCGAGGAGAAGCGCGCAGGCACCTGGCGAT
ATGCCTCTGGAAGGGAGGGCCTACTCCCCAACCCCCAAAGAAGAGGACAG
GGAGGGAGGGAGGAGAGAGGGAGGGGAATATGGAAGGAAGCAACGAGGTC
GCAGCCCCAAACGTAGAGGTAGTCTTAGTGACCAGCACCGGTCGCCGTAC
TACCACGATAGGAAGGAGGGGAGGAAGGAAGAGGAGGAGAGGAAGAGGGA
GGGAGTGGGGGAGTGTCGGGGGGTAAGCTTCGAGGAGCACCAGCGGCAGC
AGCAGCAGCAGCAAAAGAAGAAAGAGGAGGAGGATGACCACCGACATCAT
TATTCCACTTCTTTAAGAGTAGTGGTTATGGTAGAGGAACAGCAGCAGCA
GCGCGAGCAGCAGCGGCGGCGTTGCAGCAATCACCATCAGCAGCAGCAGC
AGCAGCAGTGCCAGCAGCATCCGAACAACCTTTGCGACAAGGAAAAGCCG
CATTTCGATTACCACCATCACCACCACAATCATCATCATCATAATCAACA
GCAACGGCGAGAGCAGCAGCAGAAGTATTCTCGAAACCATCATCGAGGGC
GGGAGCGTGGAGAAAGGGAGGAGAGGGAAGGGGAGAGGATAGAAAGAGAG
GATAGTTGTGGTAAAGGAAAAGAAAAAGGAGAAGGAGGAGCAGACGGAGG
AGAAGGAAGAAATAGGGAACGAAGAGAAGAAAGACATACCAGGAATAGAA
GGAAGAAGGATAAACAAAAGAGAAGGAAGGCGAGGAAGAAGGAGAAAGAG
GAGAACGGGCATCATGTGGAGAAGAAGCACAGTCACAGTGAGAGGCAGGT
CACTTCATCACCTGCTACCGTCGTTGCTGCGGCTGCTACGCCTGGAAATA
AAAAAGAGAAGAAGATACAGGAAACGGACTCGTCCCCGAGCAGGTTCAAA
TGGGCCATGAAAGAGGTAGGCAAGCCCCACGAGCACGAGCACACAAAAAG
TCAAAAGATAGGTGACGGCAAGAAAAAGAAACGGAGCATCTTACTCAGTT
TCGGAGAAGAAATTGCCGATGAAGAGGTAGGAGCAGTGCAAAAGAAGGCG
AACCTTGACAGGGTGACAGCACAGCGAATAAAAGCGGAACGCATCGAAGC
CATGCGTCTTTCGGGTAACGCTGCCGCCGCTGCTGCTGCAGCT
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Coding sequence (CDS) from alignment at scaffold_18:57279..59371+

>mRNA_6510 ID=mRNA_6510|Name=jgi.p|Nanoce1779_2|672422|organism=Nannochloropsis oceanica|type=CDS|length=816bp|location=Sequence derived from alignment at scaffold_18:57279..59371+ (Nannochloropsis oceanica)
ATGGTAGAGGAACAGCAGCAGCAGCGCGAGCAGCAGCGGCGGCGTTGCAG
CAATCACCATCAGCAGCAGCAGCAGCAGCAGTGCCAGCAGCATCCGAACA
ACCTTTGCGACAAGGAAAAGCCGCATTTCGATTACCACCATCACCACCAC
AATCATCATCATCATAATCAACAGCAACGGCGAGAGCAGCAGCAGAAGTA
TTCTCGAAACCATCATCGAGGGCGGGAGCGTGGAGAAAGGGAGGAGAGGG
AAGGGGAGAGGATAGAAAGAGAGGATAGTTGTGGTAAAGGAAAAGAAAAA
GGAGAAGGAGGAGCAGACGGAGGAGAAGGAAGAAATAGGGAACGAAGAGA
AGAAAGACATACCAGGAATAGAAGGAAGAAGGATAAACAAAAGAGAAGGA
AGGCGAGGAAGAAGGAGAAAGAGGAGAACGGGCATCATGTGGAGAAGAAG
CACAGTCACAGTGAGAGGCAGGTCACTTCATCACCTGCTACCGTCGTTGC
TGCGGCTGCTACGCCTGGAAATAAAAAAGAGAAGAAGATACAGGAAACGG
ACTCGTCCCCGAGCAGGTTCAAATGGGCCATGAAAGAGGTAGGCAAGCCC
CACGAGCACGAGCACACAAAAAGTCAAAAGATAGGTGACGGCAAGAAAAA
GAAACGGAGCATCTTACTCAGTTTCGGAGAAGAAATTGCCGATGAAGAGG
TAGGAGCAGTGCAAAAGAAGGCGAACCTTGACAGGGTGACAGCACAGCGA
ATAAAAGCGGAACGCATCGAAGCCATGCGTCTTTCGGGTAACGCTGCCGC
CGCTGCTGCTGCAGCT
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Synonyms
Publications