jgi.p|Nanoce1779_2|597207, mRNA_6508 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|597207
Unique Name	mRNA_6508
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1864
Alignment location	scaffold_18:55426..57289 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	597293
Track	FilteredModels2
ProteinId	597207

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:55426..57289 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597207	gene_6508	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597207	mRNA_6508-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6508	CDS_6508	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:55426..57289-
coding sequence from alignment at scaffold_18:55426..57289-

mRNA sequence

>mRNA_6508 ID=mRNA_6508|Name=jgi.p|Nanoce1779_2|597207|organism=Nannochloropsis oceanica|type=mRNA|length=1864bp
GCGTAAAACCTTTTCATGTTTAATATAAAGGAGTGTGCATGAGTTCGTGA
GTTGAGTTCATGGAATTTGGTGAGCGAGCGAGGCAGCGGCGACCACGACA
ACCTCCTATTAATGGCCCGATGGATGGACATGCCGCAAATGGCACTGGGT
TCAGTCACACTCAACTAAACTCTCCAGTATTCGCTCCGACAGGACACGTG
ATTTCAAAGAAGATAACGTGGGACTGGTCGACCAAATGCATACCCAAAGT
TCAGCCGTAAAGCATCGAATATCTATCTCTACTAGCCTAACACCCACCCA
CCACTTTACACTTTACAGTCCACCATGGCTGTTAAGAAGGTCAAGACCAA
GACCAAGACTATGGTGCTGGGCACCGAAACTGGCCAAAAGGTCTCCGCCA
AGGCCAGTGAGCTCGAGGCCCGTCTGGCCAAGATGGTGGATGACAACGAT
GGGTTGAGCAGCAGCGGGAGCGAGGCCGAGGATCCTAACAGCACCACCAC
TAGCGATGACGACGGCAAGGCTCAAAAGGCGCTCAAAACCAAGAGCGCAG
ACTTTGTGGCACTCTCTGCGGCGGTGCAGGAGAAGCTGGTGGCGCAGGCT
TTGAAGCAGAAGAAACAGGAAGTAAAGGCTAAAGCGCATGCGGCTGCAGC
AGCTGCCAAAGGGAGCAAGCCCAATGCAGTGGTCTATCTGGGTCACATTC
CACACGGCTTTTTCGAGGAGCAGATGAAATCATTTTTCTCGCAATTCGGT
GGCGTAAAGCACGTGCGTCTGAGCAGGAGTAAGAAAACGGGAAAGTCCCG
TGGGTATGCTTTTTTGGAGTTTGATGACGCGGAGGTGGCGACTGTGGTGG
CCGAGACGATGCAAGGCTATTATCTTGGAGGACGAAAACTGGTGTGTGAG
GTCCTCCCTCCTACTAAGGTTCATCCCAAGCTTTTTGTCGACGCGGATAA
GAAGTGGCGTGTGATCCCTTGGCGGCAATTGGAAAAGGACCGTCGGACCG
CGCCCAAGACTGAGGTGGAGGCGAGAAAATGCCTGTCGAGGCTAGTGCGT
GGGGATAAGCGTAAACGAAGAAAATTGGCCGCAAAAGGGATTGAGTACGA
GTTTCCTGGGTATGAGGCGACGGCCGCCGAGGCTTATGTAAAACGGAAGA
AGGACGATCCAGCGGCGGCAGCGACTGCGATAAAGGATGTTGAGAAGAGC
GAGGGGAAGACAGGAGGGAGGAAGGGGAGGGCTATGAAGGAGGAGGACAA
AAGGGAGAATGTTGGAGCAGCTGCCGTTGGAGGGAAGAAAAGGAGAGTGG
AGCAGCCGGAGGTGGAAGTAGAAGCAGCTGCGGTTGTGAAGGGTGGGAGT
GACAGCAGTAGTAGTAAGAAAAAAGCAAAGATCCTTGCACCTGCCGCTCC
TGCTGGTGCTGCCGCTGCCGCAATCCCCGCGCCCGTTAAAGTGGTGATGC
CTGCGACTAAGAAGGGAGGGAAGCGGGCACGTGGAAGGGAGGAGGAGATG
AAGGAAGCGCCGAAAAAAATGGTAGATACCAAGAAAAAGACGACGGCGGC
GCCTGTTGCTACCGTTAAAGCTCCTGCTGCTGCTCCTGCCAAGGCTTCGG
TCGTGAAAGCAGCGATTACTACTCTCGCGAATAAAACGAAGAAATCCACT
GCTGGGGCCAAGAAAAAGTAAATGAGAAATTGGAATGGAATTGAGGGTCT
TTTGCCCTTACACATTCAAGAAGTCAAAGTAAAAGTGATTAGCAGTAGCA
GCAGCGGCAGCAGCAGCAGCAGCAGCAGCAGCCTCTTTATTAGATCCGAA
AAGCGGGATTTCTTTTAAATGAAGATGAAGGCCAAGAAGAAGAGAGGAAC
GAGGAGTAACGTCC

protein sequence of jgi.p|Nanoce1779_2|597207

>mRNA_6508-protein ID=mRNA_6508-protein|Name=jgi.p|Nanoce1779_2|597207|organism=Nannochloropsis oceanica|type=polypeptide|length=449bp
MAVKKVKTKTKTMVLGTETGQKVSAKASELEARLAKMVDDNDGLSSSGSE
AEDPNSTTTSDDDGKAQKALKTKSADFVALSAAVQEKLVAQALKQKKQEV
KAKAHAAAAAAKGSKPNAVVYLGHIPHGFFEEQMKSFFSQFGGVKHVRLS
RSKKTGKSRGYAFLEFDDAEVATVVAETMQGYYLGGRKLVCEVLPPTKVH
PKLFVDADKKWRVIPWRQLEKDRRTAPKTEVEARKCLSRLVRGDKRKRRK
LAAKGIEYEFPGYEATAAEAYVKRKKDDPAAAATAIKDVEKSEGKTGGRK
GRAMKEEDKRENVGAAAVGGKKRRVEQPEVEVEAAAVVKGGSDSSSSKKK
AKILAPAAPAGAAAAAIPAPVKVVMPATKKGGKRARGREEEMKEAPKKMV
DTKKKTTAAPVATVKAPAAAPAKASVVKAAITTLANKTKKSTAGAKKK*

mRNA from alignment at scaffold_18:55426..57289-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6508 ID=mRNA_6508|Name=jgi.p|Nanoce1779_2|597207|organism=Nannochloropsis oceanica|type=mRNA|length=1864bp|location=Sequence derived from alignment at scaffold_18:55426..57289- (Nannochloropsis oceanica)
GCGTAAAACCTTTTCATGTTTAATATAAAGGAGTGTGCATGAGTTCGTGA
GTTGAGTTCATGGAATTTGGTGAGCGAGCGAGGCAGCGGCGACCACGACA
ACCTCCTATTAATGGCCCGATGGATGGACATGCCGCAAATGGCACTGGGT
TCAGTCACACTCAACTAAACTCTCCAGTATTCGCTCCGACAGGACACGTG
ATTTCAAAGAAGATAACGTGGGACTGGTCGACCAAATGCATACCCAAAGT
TCAGCCGTAAAGCATCGAATATCTATCTCTACTAGCCTAACACCCACCCA
CCACTTTACACTTTACAGTCCACCATGGCTGTTAAGAAGGTCAAGACCAA
GACCAAGACTATGGTGCTGGGCACCGAAACTGGCCAAAAGGTCTCCGCCA
AGGCCAGTGAGCTCGAGGCCCGTCTGGCCAAGATGGTGGATGACAACGAT
GGGTTGAGCAGCAGCGGGAGCGAGGCCGAGGATCCTAACAGCACCACCAC
TAGCGATGACGACGGCAAGGCTCAAAAGGCGCTCAAAACCAAGAGCGCAG
ACTTTGTGGCACTCTCTGCGGCGGTGCAGGAGAAGCTGGTGGCGCAGGCT
TTGAAGCAGAAGAAACAGGAAGTAAAGGCTAAAGCGCATGCGGCTGCAGC
AGCTGCCAAAGGGAGCAAGCCCAATGCAGTGGTCTATCTGGGTCACATTC
CACACGGCTTTTTCGAGGAGCAGATGAAATCATTTTTCTCGCAATTCGGT
GGCGTAAAGCACGTGCGTCTGAGCAGGAGTAAGAAAACGGGAAAGTCCCG
TGGGTATGCTTTTTTGGAGTTTGATGACGCGGAGGTGGCGACTGTGGTGG
CCGAGACGATGCAAGGCTATTATCTTGGAGGACGAAAACTGGTGTGTGAG
GTCCTCCCTCCTACTAAGGTTCATCCCAAGCTTTTTGTCGACGCGGATAA
GAAGTGGCGTGTGATCCCTTGGCGGCAATTGGAAAAGGACCGTCGGACCG
CGCCCAAGACTGAGGTGGAGGCGAGAAAATGCCTGTCGAGGCTAGTGCGT
GGGGATAAGCGTAAACGAAGAAAATTGGCCGCAAAAGGGATTGAGTACGA
GTTTCCTGGGTATGAGGCGACGGCCGCCGAGGCTTATGTAAAACGGAAGA
AGGACGATCCAGCGGCGGCAGCGACTGCGATAAAGGATGTTGAGAAGAGC
GAGGGGAAGACAGGAGGGAGGAAGGGGAGGGCTATGAAGGAGGAGGACAA
AAGGGAGAATGTTGGAGCAGCTGCCGTTGGAGGGAAGAAAAGGAGAGTGG
AGCAGCCGGAGGTGGAAGTAGAAGCAGCTGCGGTTGTGAAGGGTGGGAGT
GACAGCAGTAGTAGTAAGAAAAAAGCAAAGATCCTTGCACCTGCCGCTCC
TGCTGGTGCTGCCGCTGCCGCAATCCCCGCGCCCGTTAAAGTGGTGATGC
CTGCGACTAAGAAGGGAGGGAAGCGGGCACGTGGAAGGGAGGAGGAGATG
AAGGAAGCGCCGAAAAAAATGGTAGATACCAAGAAAAAGACGACGGCGGC
GCCTGTTGCTACCGTTAAAGCTCCTGCTGCTGCTCCTGCCAAGGCTTCGG
TCGTGAAAGCAGCGATTACTACTCTCGCGAATAAAACGAAGAAATCCACT
GCTGGGGCCAAGAAAAAGTAAATGAGAAATTGGAATGGAATTGAGGGTCT
TTTGCCCTTACACATTCAAGAAGTCAAAGTAAAAGTGATTAGCAGTAGCA
GCAGCGGCAGCAGCAGCAGCAGCAGCAGCAGCCTCTTTATTAGATCCGAA
AAGCGGGATTTCTTTTAAATGAAGATGAAGGCCAAGAAGAAGAGAGGAAC
GAGGAGTAACGTCC

Coding sequence (CDS) from alignment at scaffold_18:55426..57289-

>mRNA_6508 ID=mRNA_6508|Name=jgi.p|Nanoce1779_2|597207|organism=Nannochloropsis oceanica|type=CDS|length=1347bp|location=Sequence derived from alignment at scaffold_18:55426..57289- (Nannochloropsis oceanica)
ATGGCTGTTAAGAAGGTCAAGACCAAGACCAAGACTATGGTGCTGGGCAC
CGAAACTGGCCAAAAGGTCTCCGCCAAGGCCAGTGAGCTCGAGGCCCGTC
TGGCCAAGATGGTGGATGACAACGATGGGTTGAGCAGCAGCGGGAGCGAG
GCCGAGGATCCTAACAGCACCACCACTAGCGATGACGACGGCAAGGCTCA
AAAGGCGCTCAAAACCAAGAGCGCAGACTTTGTGGCACTCTCTGCGGCGG
TGCAGGAGAAGCTGGTGGCGCAGGCTTTGAAGCAGAAGAAACAGGAAGTA
AAGGCTAAAGCGCATGCGGCTGCAGCAGCTGCCAAAGGGAGCAAGCCCAA
TGCAGTGGTCTATCTGGGTCACATTCCACACGGCTTTTTCGAGGAGCAGA
TGAAATCATTTTTCTCGCAATTCGGTGGCGTAAAGCACGTGCGTCTGAGC
AGGAGTAAGAAAACGGGAAAGTCCCGTGGGTATGCTTTTTTGGAGTTTGA
TGACGCGGAGGTGGCGACTGTGGTGGCCGAGACGATGCAAGGCTATTATC
TTGGAGGACGAAAACTGGTGTGTGAGGTCCTCCCTCCTACTAAGGTTCAT
CCCAAGCTTTTTGTCGACGCGGATAAGAAGTGGCGTGTGATCCCTTGGCG
GCAATTGGAAAAGGACCGTCGGACCGCGCCCAAGACTGAGGTGGAGGCGA
GAAAATGCCTGTCGAGGCTAGTGCGTGGGGATAAGCGTAAACGAAGAAAA
TTGGCCGCAAAAGGGATTGAGTACGAGTTTCCTGGGTATGAGGCGACGGC
CGCCGAGGCTTATGTAAAACGGAAGAAGGACGATCCAGCGGCGGCAGCGA
CTGCGATAAAGGATGTTGAGAAGAGCGAGGGGAAGACAGGAGGGAGGAAG
GGGAGGGCTATGAAGGAGGAGGACAAAAGGGAGAATGTTGGAGCAGCTGC
CGTTGGAGGGAAGAAAAGGAGAGTGGAGCAGCCGGAGGTGGAAGTAGAAG
CAGCTGCGGTTGTGAAGGGTGGGAGTGACAGCAGTAGTAGTAAGAAAAAA
GCAAAGATCCTTGCACCTGCCGCTCCTGCTGGTGCTGCCGCTGCCGCAAT
CCCCGCGCCCGTTAAAGTGGTGATGCCTGCGACTAAGAAGGGAGGGAAGC
GGGCACGTGGAAGGGAGGAGGAGATGAAGGAAGCGCCGAAAAAAATGGTA
GATACCAAGAAAAAGACGACGGCGGCGCCTGTTGCTACCGTTAAAGCTCC
TGCTGCTGCTCCTGCCAAGGCTTCGGTCGTGAAAGCAGCGATTACTACTC
TCGCGAATAAAACGAAGAAATCCACTGCTGGGGCCAAGAAAAAGTAA

Synonyms

Publications