jgi.p|Nanoce1779_2|567561, mRNA_6505 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|567561
Unique NamemRNA_6505
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length366
Alignment locationscaffold_18:48418..48783 -

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Properties
Property NameValue
TranscriptId567647
TrackFilteredModels2
ProteinId567561
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:48418..48783 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|567561gene_6505Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6505CDS_6505Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|567561mRNA_6505-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6505 ID=mRNA_6505|Name=jgi.p|Nanoce1779_2|567561|organism=Nannochloropsis oceanica|type=mRNA|length=366bp
ATGTATGACGAGCTATCAGGGAGGAAACTCTGGTCTTTATCCGCTTTTCT
GGGGCACGATAGAACCAACAATCAAGCCGAATACGCTGCTTTGTGCTTTG
GGCTGGAGGAGGCATTGAAGCGAGGCGTGAGCAGTGTCCAGGTCTTTGGA
GACTCTACATTGGTAGTGAAGCAGGTGCAGGGGGCATGGAAGGTCAAAAA
TGCCGGCATGAGAGTGTGGCATAGCAAGGCTCTGGCCCTGGGGAAGAAGT
TTAAACGGTTTCGGATTTGTTATATACCGAGGGAGGAGAACAAGGTGGCG
GACGCGTTGGCCAATGAAGGGATGGATGGACGGAAGGAAGGAGGGGCGGT
GGTCGTTGAGGAGTGA
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protein sequence of jgi.p|Nanoce1779_2|567561

>mRNA_6505-protein ID=mRNA_6505-protein|Name=jgi.p|Nanoce1779_2|567561|organism=Nannochloropsis oceanica|type=polypeptide|length=122bp
MYDELSGRKLWSLSAFLGHDRTNNQAEYAALCFGLEEALKRGVSSVQVFG
DSTLVVKQVQGAWKVKNAGMRVWHSKALALGKKFKRFRICYIPREENKVA
DALANEGMDGRKEGGAVVVEE*
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mRNA from alignment at scaffold_18:48418..48783-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6505 ID=mRNA_6505|Name=jgi.p|Nanoce1779_2|567561|organism=Nannochloropsis oceanica|type=mRNA|length=366bp|location=Sequence derived from alignment at scaffold_18:48418..48783- (Nannochloropsis oceanica)
ATGTATGACGAGCTATCAGGGAGGAAACTCTGGTCTTTATCCGCTTTTCT GGGGCACGATAGAACCAACAATCAAGCCGAATACGCTGCTTTGTGCTTTG GGCTGGAGGAGGCATTGAAGCGAGGCGTGAGCAGTGTCCAGGTCTTTGGA GACTCTACATTGGTAGTGAAGCAGGTGCAGGGGGCATGGAAGGTCAAAAA TGCCGGCATGAGAGTGTGGCATAGCAAGGCTCTGGCCCTGGGGAAGAAGT TTAAACGGTTTCGGATTTGTTATATACCGAGGGAGGAGAACAAGGTGGCG GACGCGTTGGCCAATGAAGGGATGGATGGACGGAAGGAAGGAGGGGCGGT GGTCGTTGAGGAGTGA
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Coding sequence (CDS) from alignment at scaffold_18:48418..48783-

>mRNA_6505 ID=mRNA_6505|Name=jgi.p|Nanoce1779_2|567561|organism=Nannochloropsis oceanica|type=CDS|length=366bp|location=Sequence derived from alignment at scaffold_18:48418..48783- (Nannochloropsis oceanica)
ATGTATGACGAGCTATCAGGGAGGAAACTCTGGTCTTTATCCGCTTTTCT
GGGGCACGATAGAACCAACAATCAAGCCGAATACGCTGCTTTGTGCTTTG
GGCTGGAGGAGGCATTGAAGCGAGGCGTGAGCAGTGTCCAGGTCTTTGGA
GACTCTACATTGGTAGTGAAGCAGGTGCAGGGGGCATGGAAGGTCAAAAA
TGCCGGCATGAGAGTGTGGCATAGCAAGGCTCTGGCCCTGGGGAAGAAGT
TTAAACGGTTTCGGATTTGTTATATACCGAGGGAGGAGAACAAGGTGGCG
GACGCGTTGGCCAATGAAGGGATGGATGGACGGAAGGAAGGAGGGGCGGT
GGTCGTTGAGGAGTGA
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Synonyms
Publications