jgi.p|Nanoce1779_2|597197, mRNA_6504 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|597197
Unique Name	mRNA_6504
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1969
Alignment location	scaffold_18:46428..48396 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	597283
Track	FilteredModels2
ProteinId	597197

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:46428..48396 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597197	gene_6504	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597197	mRNA_6504-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6504	CDS_6504	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:46428..48396+
coding sequence from alignment at scaffold_18:46428..48396+

mRNA sequence

>mRNA_6504 ID=mRNA_6504|Name=jgi.p|Nanoce1779_2|597197|organism=Nannochloropsis oceanica|type=mRNA|length=1969bp
AGGCCCCTCCTACCGGAGATACTCATTCGCTAAGACAGGACTACCACACT
ACACGACCGAATCCCAAGTGCTCTCCAAATATAACCTCCAGAATATGCCG
ATGTCGCAGCATAAGGCGGCGTCGGTTGCGGCTGTGGGCATTGTTGTTGC
CCTAGCCGCGGCGTTTCTGAGACAAAGGAGGTTTAAGACCGGGAGCAGCA
GCACCGAGAAGCGCCACCTAATCTCGGTCGTGGGAGACGCTTTTTGCGAC
GTCATAGTGGGTGGTGTCAACCACATACCGGAGTGGGGCACGGACGTGCT
GACCGACACTCCGATTGCTTTGACGCCGGGGGGTTCTGCTTGCAATACCG
TCCTCCAGCTCGCCAGCTTGCTACGTCTTTTTCCTCCATGCTCGTCCTCA
TCAAACACTCATCCGAGCATTGTCTTGCACACCGCCTTGGGCAGTGACCT
CTTTGGCTCCTTCATGCGCAGCAAAATTGCGGAGGTCGCTCAGGGCCAGG
ACGTCCAAGTCTCCACGGCTTCAACCTCCCCCTCGTTCTCGTCCTCCTCG
TCCTGCTCGTCCTGCTCGTCCTCAGCCACCCGAGCAGAAAATAGTACGAC
ATGTTCAACACACCCAAAAACGACGACGACAGGCGTTTGTATCTGTCTCT
CCGGCGCGGCTGACCGCGCCTTCATCACCCATCGGGGAGTCGTCTCTACG
TTCAACGAAAGCCACCTGGATTTGCCCTCCCTCTACAACAGCTGCTTCGT
TCACATAGCTGGATTTTACAATTGTCCTTCTCTCTGGCCGGCCTTGCCTG
GGATATTGCGCGAGTGTCGGAAGAGAGGCGTCGTAACAAGTTTGAGTCCG
CAATATGATGCGCGTGGAGAGTGGGGGGGGGGGTTGGAAGAAATATTTCC
ATGGTTGGATTTGTTGTTGTTGAATGAGATGGAGGCGTTGGCGATAACGA
AGGGGATGATTGGGAGGAAACAAGGGAAGAAGGACGACAATGTGGAGGAA
AGGGAGGGGGAGGAGGAAGAAAAGAAAGAAAGAGCGGTGGAGGCGGCGGC
GAGGTATTTTGTAGATCTGGGGGTGAGGCACGTGATTGTTACGAGAGGGG
CCCTGGGGGCATATGCGTTAATTGAAGAGAAAGAGAAGGAAGGAGAGGGA
AGTCGGAAGAGGAGGGAGGTGTGGCAGGGGTGTCCGAGGAAGGAGGTGGT
GGATACGACAGGGGCAGGTGATTCCTTCAACGCGGGAGTCTTGTTTAGGC
TGATAGAGAGATTAATGAGAAAAAAGGAGGGAGGGAGAGAAGGAGGAGGG
GAAAAAGAGAAGGATGCGTGGAATGAAGTGTTGAGGATGGGGTGTGCTAT
GGGAAGTCATATTGTGACAAAAATGGGGGCGTCGGCGCCGCCGCGTGATA
GGGAGGAGATTTTGGAGAATTTGAGGGAGATTGAATGAAAAATTAAAGAA
ATTATTGATAAAACAAAGTATATATTAAAAAATTGACGAATAATGAGTGA
CGAAAATAAATAAAATATGTCACCTCGAGTGCATAACGACACGTGTCATG
GCTCTGTGCTTTTCCATATTCAGCTCGTTGTGAGTCGTATTCGGCATAAA
GGGAAAATCTAGCACGGTCTGGGTTCATTTGTCGGTGCCGTGGGTGGGTG
GATTAGAAGGGTGGATTTGGTGGGTGGATTAGGAGGGTGGATTAGAGGGG
TGGATTAGGAGGGTGGATTAGGAGGGTGGATTGTGAGGGTGGATTAGGAG
GGTGGATTAGAGGGGCGCCTCAGGAGGCACTCGTCGAATGGCTGAGCCTA
TCCCTTTGGCTGGTGCATTGGAGAAGCCAGGAAATTTCGAATTGGATCAG
CGCCAAGAGGTCTTTTTGAAGAGGCAAAGGGGACGCTTATCCTTGGACTT
GATGATCATCGACGCCTATCCTGAAGTCCCTTCCGTCACATTTTATTTTA
TTTTTTATACTAATCATTC

protein sequence of jgi.p|Nanoce1779_2|597197

>mRNA_6504-protein ID=mRNA_6504-protein|Name=jgi.p|Nanoce1779_2|597197|organism=Nannochloropsis oceanica|type=polypeptide|length=448bp
MPMSQHKAASVAAVGIVVALAAAFLRQRRFKTGSSSTEKRHLISVVGDAF
CDVIVGGVNHIPEWGTDVLTDTPIALTPGGSACNTVLQLASLLRLFPPCS
SSSNTHPSIVLHTALGSDLFGSFMRSKIAEVAQGQDVQVSTASTSPSFSS
SSSCSSCSSSATRAENSTTCSTHPKTTTTGVCICLSGAADRAFITHRGVV
STFNESHLDLPSLYNSCFVHIAGFYNCPSLWPALPGILRECRKRGVVTSL
SPQYDARGEWGGGLEEIFPWLDLLLLNEMEALAITKGMIGRKQGKKDDNV
EEREGEEEEKKERAVEAAARYFVDLGVRHVIVTRGALGAYALIEEKEKEG
EGSRKRREVWQGCPRKEVVDTTGAGDSFNAGVLFRLIERLMRKKEGGREG
GGEKEKDAWNEVLRMGCAMGSHIVTKMGASAPPRDREEILENLREIE*

mRNA from alignment at scaffold_18:46428..48396+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6504 ID=mRNA_6504|Name=jgi.p|Nanoce1779_2|597197|organism=Nannochloropsis oceanica|type=mRNA|length=1969bp|location=Sequence derived from alignment at scaffold_18:46428..48396+ (Nannochloropsis oceanica)
AGGCCCCTCCTACCGGAGATACTCATTCGCTAAGACAGGACTACCACACT
ACACGACCGAATCCCAAGTGCTCTCCAAATATAACCTCCAGAATATGCCG
ATGTCGCAGCATAAGGCGGCGTCGGTTGCGGCTGTGGGCATTGTTGTTGC
CCTAGCCGCGGCGTTTCTGAGACAAAGGAGGTTTAAGACCGGGAGCAGCA
GCACCGAGAAGCGCCACCTAATCTCGGTCGTGGGAGACGCTTTTTGCGAC
GTCATAGTGGGTGGTGTCAACCACATACCGGAGTGGGGCACGGACGTGCT
GACCGACACTCCGATTGCTTTGACGCCGGGGGGTTCTGCTTGCAATACCG
TCCTCCAGCTCGCCAGCTTGCTACGTCTTTTTCCTCCATGCTCGTCCTCA
TCAAACACTCATCCGAGCATTGTCTTGCACACCGCCTTGGGCAGTGACCT
CTTTGGCTCCTTCATGCGCAGCAAAATTGCGGAGGTCGCTCAGGGCCAGG
ACGTCCAAGTCTCCACGGCTTCAACCTCCCCCTCGTTCTCGTCCTCCTCG
TCCTGCTCGTCCTGCTCGTCCTCAGCCACCCGAGCAGAAAATAGTACGAC
ATGTTCAACACACCCAAAAACGACGACGACAGGCGTTTGTATCTGTCTCT
CCGGCGCGGCTGACCGCGCCTTCATCACCCATCGGGGAGTCGTCTCTACG
TTCAACGAAAGCCACCTGGATTTGCCCTCCCTCTACAACAGCTGCTTCGT
TCACATAGCTGGATTTTACAATTGTCCTTCTCTCTGGCCGGCCTTGCCTG
GGATATTGCGCGAGTGTCGGAAGAGAGGCGTCGTAACAAGTTTGAGTCCG
CAATATGATGCGCGTGGAGAGTGGGGGGGGGGGTTGGAAGAAATATTTCC
ATGGTTGGATTTGTTGTTGTTGAATGAGATGGAGGCGTTGGCGATAACGA
AGGGGATGATTGGGAGGAAACAAGGGAAGAAGGACGACAATGTGGAGGAA
AGGGAGGGGGAGGAGGAAGAAAAGAAAGAAAGAGCGGTGGAGGCGGCGGC
GAGGTATTTTGTAGATCTGGGGGTGAGGCACGTGATTGTTACGAGAGGGG
CCCTGGGGGCATATGCGTTAATTGAAGAGAAAGAGAAGGAAGGAGAGGGA
AGTCGGAAGAGGAGGGAGGTGTGGCAGGGGTGTCCGAGGAAGGAGGTGGT
GGATACGACAGGGGCAGGTGATTCCTTCAACGCGGGAGTCTTGTTTAGGC
TGATAGAGAGATTAATGAGAAAAAAGGAGGGAGGGAGAGAAGGAGGAGGG
GAAAAAGAGAAGGATGCGTGGAATGAAGTGTTGAGGATGGGGTGTGCTAT
GGGAAGTCATATTGTGACAAAAATGGGGGCGTCGGCGCCGCCGCGTGATA
GGGAGGAGATTTTGGAGAATTTGAGGGAGATTGAATGAAAAATTAAAGAA
ATTATTGATAAAACAAAGTATATATTAAAAAATTGACGAATAATGAGTGA
CGAAAATAAATAAAATATGTCACCTCGAGTGCATAACGACACGTGTCATG
GCTCTGTGCTTTTCCATATTCAGCTCGTTGTGAGTCGTATTCGGCATAAA
GGGAAAATCTAGCACGGTCTGGGTTCATTTGTCGGTGCCGTGGGTGGGTG
GATTAGAAGGGTGGATTTGGTGGGTGGATTAGGAGGGTGGATTAGAGGGG
TGGATTAGGAGGGTGGATTAGGAGGGTGGATTGTGAGGGTGGATTAGGAG
GGTGGATTAGAGGGGCGCCTCAGGAGGCACTCGTCGAATGGCTGAGCCTA
TCCCTTTGGCTGGTGCATTGGAGAAGCCAGGAAATTTCGAATTGGATCAG
CGCCAAGAGGTCTTTTTGAAGAGGCAAAGGGGACGCTTATCCTTGGACTT
GATGATCATCGACGCCTATCCTGAAGTCCCTTCCGTCACATTTTATTTTA
TTTTTTATACTAATCATTC

Coding sequence (CDS) from alignment at scaffold_18:46428..48396+

>mRNA_6504 ID=mRNA_6504|Name=jgi.p|Nanoce1779_2|597197|organism=Nannochloropsis oceanica|type=CDS|length=1344bp|location=Sequence derived from alignment at scaffold_18:46428..48396+ (Nannochloropsis oceanica)
ATGCCGATGTCGCAGCATAAGGCGGCGTCGGTTGCGGCTGTGGGCATTGT
TGTTGCCCTAGCCGCGGCGTTTCTGAGACAAAGGAGGTTTAAGACCGGGA
GCAGCAGCACCGAGAAGCGCCACCTAATCTCGGTCGTGGGAGACGCTTTT
TGCGACGTCATAGTGGGTGGTGTCAACCACATACCGGAGTGGGGCACGGA
CGTGCTGACCGACACTCCGATTGCTTTGACGCCGGGGGGTTCTGCTTGCA
ATACCGTCCTCCAGCTCGCCAGCTTGCTACGTCTTTTTCCTCCATGCTCG
TCCTCATCAAACACTCATCCGAGCATTGTCTTGCACACCGCCTTGGGCAG
TGACCTCTTTGGCTCCTTCATGCGCAGCAAAATTGCGGAGGTCGCTCAGG
GCCAGGACGTCCAAGTCTCCACGGCTTCAACCTCCCCCTCGTTCTCGTCC
TCCTCGTCCTGCTCGTCCTGCTCGTCCTCAGCCACCCGAGCAGAAAATAG
TACGACATGTTCAACACACCCAAAAACGACGACGACAGGCGTTTGTATCT
GTCTCTCCGGCGCGGCTGACCGCGCCTTCATCACCCATCGGGGAGTCGTC
TCTACGTTCAACGAAAGCCACCTGGATTTGCCCTCCCTCTACAACAGCTG
CTTCGTTCACATAGCTGGATTTTACAATTGTCCTTCTCTCTGGCCGGCCT
TGCCTGGGATATTGCGCGAGTGTCGGAAGAGAGGCGTCGTAACAAGTTTG
AGTCCGCAATATGATGCGCGTGGAGAGTGGGGGGGGGGGTTGGAAGAAAT
ATTTCCATGGTTGGATTTGTTGTTGTTGAATGAGATGGAGGCGTTGGCGA
TAACGAAGGGGATGATTGGGAGGAAACAAGGGAAGAAGGACGACAATGTG
GAGGAAAGGGAGGGGGAGGAGGAAGAAAAGAAAGAAAGAGCGGTGGAGGC
GGCGGCGAGGTATTTTGTAGATCTGGGGGTGAGGCACGTGATTGTTACGA
GAGGGGCCCTGGGGGCATATGCGTTAATTGAAGAGAAAGAGAAGGAAGGA
GAGGGAAGTCGGAAGAGGAGGGAGGTGTGGCAGGGGTGTCCGAGGAAGGA
GGTGGTGGATACGACAGGGGCAGGTGATTCCTTCAACGCGGGAGTCTTGT
TTAGGCTGATAGAGAGATTAATGAGAAAAAAGGAGGGAGGGAGAGAAGGA
GGAGGGGAAAAAGAGAAGGATGCGTGGAATGAAGTGTTGAGGATGGGGTG
TGCTATGGGAAGTCATATTGTGACAAAAATGGGGGCGTCGGCGCCGCCGC
GTGATAGGGAGGAGATTTTGGAGAATTTGAGGGAGATTGAATGA

Synonyms

Publications