Properties
| Property Name | Value |
|---|
| TranscriptId | 558093 |
| Track | FilteredModels2 |
| ProteinId | 558007 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_18 | supercontig | scaffold_18:40544..42950 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6502 ID=mRNA_6502|Name=jgi.p|Nanoce1779_2|558007|organism=Nannochloropsis oceanica|type=mRNA|length=2086bp
GTAGAAGGAGGGCGTAACGGCGTGGCGGCAGTTGGGCTGCTAAAATAATC
GAAGGGGAGGTCATCATCCCTTCTCTACTCACTCTCCCCGCATGGGCAAT
TTATACACGAAAGGTTGTCGTGAATTGATACATAATACTTACCATGGGGT
TGCGGCGGTGGAGGCATGCCACCGCCGCGGTAGTTGCAAGCATCTTCACT
GTCGCCTCTTCCGATTGCTGCGGGATTGCTGCTGCTGTCACTGCCTCCAC
CCAAGACAAGCAATCAGCCCTCACCACACCACCACATATCATCTATATTC
TGGCGGATGATCTGGGCTGGAATGATGTCGGCTGGATGAATAAGGCCAAC
GAAGACATTATCCAAACCCCGAACTTGGACCAACTCGCCGCTGATGGCGT
AATCCTCAAATCCTTCTACACCCAAAGCGTCTGCACACCTACGCGTGCCT
CCTTGTTGACTGGAAAATACACCATCCATTTGGGCCTACAACACTCCATC
GTGCAGAGCGGCCAATCTTCCGCCCTTGGCACCGAGCATCGCATGCTTGC
CGAGGAATTGAAAGACCGTAATTACGCGACGCACATGGTGGGGAAGTGGC
ATTTGGGTTACTATCAAAGAAAATTCCAGCCATTGCAACGTGGGTTTGAT
ACTTTCAAGGGGATGTTGACGGGGGCTGAGTATTATTTCTCACATGTGGC
ACGGTGCGAGTTCCCCTTCTATGAATTTAAAGGATCAACGTCTGGATGGG
GCCTGGATTGGTTTGATGGGGAGGAGGCAGTGTGGGAGGACGAGGGGATA
TATAGCACTGATTTGTTGACACAGCGAGCGGAAGAGATCATTAGATCGCA
TTCTCCTTCTGGCTCGTCGGTTTCGATGGAGGGAGAGACAGAGAAGCCTT
TGTTTTTGTACTTGCCTTATCAAGCCGTCCATGGGCGGTTGCAGGCCCCG
GAGGGAGATATTGATCGGTTTTCACATGTGAAGGATAAGAATCGAAGGAC
ATACGCGGCAATGGTGTGGAAGCTTGATCAGGGTGTGGGAAACGTAACGA
AAGCGTTGAAACAGGCAGGGCTGTATGAGAATAGTGTAATTGTTTTCACG
ACTGATAATGGGGGGGATCCGGTTTTTGGCGGGAACAATTGGCCGTTACG
GGGGGAAAAAGGGAGTTACTGGGAGGGTGGGATAAGGGGAGCGGCGTTTG
TGCACTCGCCGTTGTTGGAGGAAAGGGGGGTGGAGAGGGAGAATTTGATG
CATGTTGTTGATTGGTTCCCCACAATTCTTGGTAGCAATAGTAGTAGCCG
CTGTATCACGGACAACATTGACGGAATCGACCAATGGGCCACCATCTCCC
ACGGTGCACCCGCCCCACGCCTCGAGCTCCTTCATACGATCGATCCCCTC
GGTCTCGATACTGGTGATCCATTCACAGGTACCAAACAAGCCGCCATCCG
TCAAGGACCTTGGAAGCTGCTTGTAGGCGCTCCAGGACAAAACATACATC
AAGATAAATGGACCCCTCCCCCAAATTGGGCTCCGCCGGACGAGAAGGGC
AGGAAGCCCGCGGTGGCGCCTCTGTGTGAAGATTGTAAATTTACCAAGGA
AAATTTCACGACGGGTGTATGTCTCTTCAATTTAAAGGATGATCCAGAGG
AAAACTGTAATTTAGCGGGGAGTCAACAGGTAGTGGTGACGCAGTTGTTG
GCGCGTTTGGAGGCGTGGAATGCGACGGCGGTCCCTGCTCACTACCCGGG
CCCGGATAAGAGGTGCGATCCTTCTTTGCATGGCCATGTGTTTACGGCGT
GGGGGGAGGAGGAGACCGGGTAAGAGGAAGGGTGGGAAGTGTGTGTTGCA
GTAAATAGAGTGTCTAAGGACTGTGTAAAAAGAAGCGTTGGGAGACAGGT
ATGAGTTGGTCGTGAGGTTGCGCAGTAACAAAAAGTAAGTGCACGAGAGT
GTAAGACTTGCATTGGGAAGACACATCTTTGTGGTACAGGGGAGGCTTGT
GGGTCAATTAACGATCATAGACAATACATGAGAAGATGGCAGCACAAAGA
AAAGGCAATGTGAGAAAAGAATTACGCAATCGTCTC back to topprotein sequence of jgi.p|Nanoce1779_2|558007 >mRNA_6502-protein ID=mRNA_6502-protein|Name=jgi.p|Nanoce1779_2|558007|organism=Nannochloropsis oceanica|type=polypeptide|length=560bp
MGLRRWRHATAAVVASIFTVASSDCCGIAAAVTASTQDKQSALTTPPHII
YILADDLGWNDVGWMNKANEDIIQTPNLDQLAADGVILKSFYTQSVCTPT
RASLLTGKYTIHLGLQHSIVQSGQSSALGTEHRMLAEELKDRNYATHMVG
KWHLGYYQRKFQPLQRGFDTFKGMLTGAEYYFSHVARCEFPFYEFKGSTS
GWGLDWFDGEEAVWEDEGIYSTDLLTQRAEEIIRSHSPSGSSVSMEGETE
KPLFLYLPYQAVHGRLQAPEGDIDRFSHVKDKNRRTYAAMVWKLDQGVGN
VTKALKQAGLYENSVIVFTTDNGGDPVFGGNNWPLRGEKGSYWEGGIRGA
AFVHSPLLEERGVERENLMHVVDWFPTILGSNSSSRCITDNIDGIDQWAT
ISHGAPAPRLELLHTIDPLGLDTGDPFTGTKQAAIRQGPWKLLVGAPGQN
IHQDKWTPPPNWAPPDEKGRKPAVAPLCEDCKFTKENFTTGVCLFNLKDD
PEENCNLAGSQQVVVTQLLARLEAWNATAVPAHYPGPDKRCDPSLHGHVF
TAWGEEETG* back to topmRNA from alignment at scaffold_18:40544..42950+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6502 ID=mRNA_6502|Name=jgi.p|Nanoce1779_2|558007|organism=Nannochloropsis oceanica|type=mRNA|length=2407bp|location=Sequence derived from alignment at scaffold_18:40544..42950+ (Nannochloropsis oceanica)
GTAGAAGGAGGGCGTAACGGCGTGGCGGCAGTTGGGCTGCTAAAATAATC
GAAGGGGAGGTCATCATCCCTTCTCTACTCACTCTCCCCGCATGGGCAAT
TTATACACGAAAGGTTGTCGTGAATTGATACATAATACTTACCATGGGGT
TGCGGCGGTGGAGGCATGCCACCGCCGCGGTAGTTGCAAGCATCTTCACT
GTCGCCTCTTCCGATTGCTGCGGGATTGCTGCTGCTGTCACTGCCTCCAC
CCAAGACAAGCAATCAGCCCTCACCACACCACCACATATCATCTATATTC
TGGCGGATGATCTGGGCTGGAATGATGGTACGTTTCAGTCGTTGGGGTAT
GCGCACTATTCTCGTCTCCCTGTCATGCCTCGTTGAAGGAAGCTAGCTCT
CTTCGGTGGGTGTTCGCCTATCCTCGTCCTCCCCAAAGGCATTTAACCGG
CTGTGCACTTCGCAAATCCATGATGAATTTTCCAGGTAGATAATTCAATC
CTCCACCTCCCGTGTCCTCCTACACCGCCCCCAAACGAAACAGTCGGCTG
GATGAATAAGGCCAACGAAGACATTATCCAAACCCCGAACTTGGACCAAC
TCGCCGCTGATGGCGTAATCCTCAAATCCTTCTACACCCAAAGCGTCTGC
ACACCTACGCGTGCCTCCTTGTTGACTGGAAAATACACCATCCATTTGGG
CCTACAACACTCCATCGTGCAGAGCGGCCAATCTTCCGCCCTTGGCACCG
AGCATCGCATGCTTGCCGAGGAATTGAAAGACCGTAATTACGCGACGCAC
ATGGTGGGGAAGTGGCATTTGGGTTACTATCAAAGAAAATTCCAGCCATT
GCAACGTGGGTTTGATACTTTCAAGGGGATGTTGACGGGGGCTGAGTATT
ATTTCTCACATGTGGCACGGTGCGAGTTCCCCTTCTATGAATTTAAAGGA
TCAACGTCTGGATGGGGCCTGGATTGGTTTGATGGGGAGGAGGCAGTGTG
GGAGGACGAGGGGATATATAGCACTGATTTGTTGACACAGCGAGCGGAAG
AGATCATTAGATCGCATTCTCCTTCTGGCTCGTCGGTTTCGATGGAGGGA
GAGACAGAGAAGCCTTTGTTTTTGTACTTGCCTTATCAAGCCGTCCATGG
GCGGTTGCAGGCCCCGGAGGGAGATATTGATCGGTTTTCACATGTGAAGG
ATAAGAATCGAAGGACATACGCGGCAATGGTGTGGAAGCTTGATCAGGGT
GTGGGAAACGTAACGAAAGCGTTGAAACAGGCAGGGCTGTATGAGAATAG
TGTAATTGTTTTCACGACTGATAATGGGGGGGATCCGGTTTTTGGCGGGA
ACAATTGGCCGTTACGGGGGGAAAAAGGGAGTTACTGGGAGGGTGGGATA
AGGGGAGCGGCGTTTGTGCACTCGCCGTTGTTGGAGGAAAGGGGGGTGGA
GAGGGAGAATTTGATGCATGTTGTTGATTGGTTCCCCACAATTCTTGGGT
TGGTGGACCGAGTGGTGGGAAGGGAAGGGAAGGGTGAGGGTGCGTCGTTT
AACATTTGCAATAGCAGCAGCAGTGGCACAAGCATTAGTGGTAGTAGCAG
CAGTAGCAATAGTAGTAGCCGCTGTATCACGGACAACATTGACGGAATCG
ACCAATGGGCCACCATCTCCCACGGTGCACCCGCCCCACGCCTCGAGCTC
CTTCATACGATCGATCCCCTCGGTCTCGATACTGGTGATCCATTCACAGG
TACCAAACAAGCCGCCATCCGTCAAGGACCTTGGAAGCTGCTTGTAGGCG
CTCCAGGACAAAACATACATCAAGATAAATGGACCCCTCCCCCAAATTGG
GCTCCGCCGGACGAGAAGGGCAGGAAGCCCGCGGTGGCGCCTCTGTGTGA
AGATTGTAAATTTACCAAGGAAAATTTCACGACGGGTGTATGTCTCTTCA
ATTTAAAGGATGATCCAGAGGAAAACTGTAATTTAGCGGGGAGTCAACAG
GTAGTGGTGACGCAGTTGTTGGCGCGTTTGGAGGCGTGGAATGCGACGGC
GGTCCCTGCTCACTACCCGGGCCCGGATAAGAGGTGCGATCCTTCTTTGC
ATGGCCATGTGTTTACGGCGTGGGGGGAGGAGGAGACCGGGTAAGAGGAA
GGGTGGGAAGTGTGTGTTGCAGTAAATAGAGTGTCTAAGGACTGTGTAAA
AAGAAGCGTTGGGAGACAGGTATGAGTTGGTCGTGAGGTTGCGCAGTAAC
AAAAAGTAAGTGCACGAGAGTGTAAGACTTGCATTGGGAAGACACATCTT
TGTGGTACAGGGGAGGCTTGTGGGTCAATTAACGATCATAGACAATACAT
GAGAAGATGGCAGCACAAAGAAAAGGCAATGTGAGAAAAGAATTACGCAA
TCGTCTC back to topCoding sequence (CDS) from alignment at scaffold_18:40544..42950+ >mRNA_6502 ID=mRNA_6502|Name=jgi.p|Nanoce1779_2|558007|organism=Nannochloropsis oceanica|type=CDS|length=5040bp|location=Sequence derived from alignment at scaffold_18:40544..42950+ (Nannochloropsis oceanica)
ATGGGGTTGCGGCGGTGGAGGCATGCCACCGCCGCGGTAGTTGCAAGCAT
CTTCACTGTCGCCTCTTCCGATTGCTGCGGGATTGCTGCTGCTGTCACTG
CCTCCACCCAAGACAAGCAATCAGCCCTCACCACACCACCACATATCATC
TATATTCTGGCGGATGATCTGGGCTGGAATGATGTCGGCTGGATGAATAA
GGCCAACGAAGACATTATCCAAACCCCGAACTTGGACCAACTCGCCGCTG
ATGGCGTAATCCTCAAATCCTTCTACACCCAAAGCGTCTGCACACCTACG
CGTGCCTCCTTGTTGACTGGAAAATACACCATCCATTTGGGCCTACAACA
CTCCATCGTGCAGAGCGGCCAATCTTCCGCCCTTGGCACCGAGCATCGCA
TGCTTGCCGAGGAATTGAAAGACCGTAATTACGCGACGCACATGGTGGGG
AAGTGGCATTTGGGTTACTATCAAAGAAAATTCCAGCCATTGCAACGTGG
GTTTGATACTTTCAAGGGGATGTTGACGGGGGCTGAGTATTATTTCTCAC
ATGTGGCACGGTGCGAGTTCCCCTTCTATGAATTTAAAGGATCAACGTCT
GGATGGGGCCTGGATTGGTTTGATGGGGAGGAGGCAGTGTGGGAGGACGA
GGGGATATATAGCACTGATTTGTTGACACAGCGAGCGGAAGAGATCATTA
GATCGCATTCTCCTTCTGGCTCGTCGGTTTCGATGGAGGGAGAGACAGAG
AAGCCTTTGTTTTTGTACTTGCCTTATCAAGCCGTCCATGGGCGGTTGCA
GGCCCCGGAGGGAGATATTGATCGGTTTTCACATGTGAAGGATAAGAATC
GAAGGACATACGCGGCAATGGTGTGGAAGCTTGATCAGGGTGTGGGAAAC
GTAACGAAAGCGTTGAAACAGGCAGGGCTGTATGAGAATAGTGTAATTGT
TTTCACGACTGATAATGGGGGGGATCCGGTTTTTGGCGGGAACAATTGGC
CGTTACGGGGGGAAAAAGGGAGTTACTGGGAGGGTGGGATAAGGGGAGCG
GCGTTTGTGCACTCGCCGTTGTTGGAGGAAAGGGGGGTGGAGAGGGAGAA
TTTGATGCATGTTGTTGATTGGTTCCCCACAATTCTTGGTAGCAATAGTA
GTAGCCGCTGTATCACGGACAACATTGACGGAATCGACCAATGGGCCACC
ATCTCCCACGGTGCACCCGCCCCACGCCTCGAGCTCCTTCATACGATCGA
TCCCCTCGGTCTCGATACTGGTGATCCATTCACAGGTACCAAACAAGCCG
CCATCCGTCAAGGACCTTGGAAGCTGCTTGTAGGCGCTCCAGGACAAAAC
ATACATCAAGATAAATGGACCCCTCCCCCAAATTGGGCTCCGCCGGACGA
GAAGGGCAGGAAGCCCGCGGTGGCGCCTCTGTGTGAAGATTGTAAATTTA
CCAAGGAAAATTTCACGACGGGTGTATGTCTCTTCAATTTAAAGGATGAT
CCAGAGGAAAACTGTAATTTAGCGGGGAGTCAACAGGTAGTGGTGACGCA
GTTGTTGGCGCGTTTGGAGGCGTGGAATGCGACGGCGGTCCCTGCTCACT
ACCCGGGCCCGGATAAGAGGTGCGATCCTTCTTTGCATGGCCATGTGTTT
ACGGCGTGGGGGGAGGAGGAGACCGGGTAAATGGGGTTGCGGCGGTGGAG
GCATGCCACCGCCGCGGTAGTTGCAAGCATCTTCACTGTCGCCTCTTCCG
ATTGCTGCGGGATTGCTGCTGCTGTCACTGCCTCCACCCAAGACAAGCAA
TCAGCCCTCACCACACCACCACATATCATCTATATTCTGGCGGATGATCT
GGGCTGGAATGATGTCGGCTGGATGAATAAGGCCAACGAAGACATTATCC
AAACCCCGAACTTGGACCAACTCGCCGCTGATGGCGTAATCCTCAAATCC
TTCTACACCCAAAGCGTCTGCACACCTACGCGTGCCTCCTTGTTGACTGG
AAAATACACCATCCATTTGGGCCTACAACACTCCATCGTGCAGAGCGGCC
AATCTTCCGCCCTTGGCACCGAGCATCGCATGCTTGCCGAGGAATTGAAA
GACCGTAATTACGCGACGCACATGGTGGGGAAGTGGCATTTGGGTTACTA
TCAAAGAAAATTCCAGCCATTGCAACGTGGGTTTGATACTTTCAAGGGGA
TGTTGACGGGGGCTGAGTATTATTTCTCACATGTGGCACGGTGCGAGTTC
CCCTTCTATGAATTTAAAGGATCAACGTCTGGATGGGGCCTGGATTGGTT
TGATGGGGAGGAGGCAGTGTGGGAGGACGAGGGGATATATAGCACTGATT
TGTTGACACAGCGAGCGGAAGAGATCATTAGATCGCATTCTCCTTCTGGC
TCGTCGGTTTCGATGGAGGGAGAGACAGAGAAGCCTTTGTTTTTGTACTT
GCCTTATCAAGCCGTCCATGGGCGGTTGCAGGCCCCGGAGGGAGATATTG
ATCGGTTTTCACATGTGAAGGATAAGAATCGAAGGACATACGCGGCAATG
GTGTGGAAGCTTGATCAGGGTGTGGGAAACGTAACGAAAGCGTTGAAACA
GGCAGGGCTGTATGAGAATAGTGTAATTGTTTTCACGACTGATAATGGGG
GGGATCCGGTTTTTGGCGGGAACAATTGGCCGTTACGGGGGGAAAAAGGG
AGTTACTGGGAGGGTGGGATAAGGGGAGCGGCGTTTGTGCACTCGCCGTT
GTTGGAGGAAAGGGGGGTGGAGAGGGAGAATTTGATGCATGTTGTTGATT
GGTTCCCCACAATTCTTGGTAGCAATAGTAGTAGCCGCTGTATCACGGAC
AACATTGACGGAATCGACCAATGGGCCACCATCTCCCACGGTGCACCCGC
CCCACGCCTCGAGCTCCTTCATACGATCGATCCCCTCGGTCTCGATACTG
GTGATCCATTCACAGGTACCAAACAAGCCGCCATCCGTCAAGGACCTTGG
AAGCTGCTTGTAGGCGCTCCAGGACAAAACATACATCAAGATAAATGGAC
CCCTCCCCCAAATTGGGCTCCGCCGGACGAGAAGGGCAGGAAGCCCGCGG
TGGCGCCTCTGTGTGAAGATTGTAAATTTACCAAGGAAAATTTCACGACG
GGTGTATGTCTCTTCAATTTAAAGGATGATCCAGAGGAAAACTGTAATTT
AGCGGGGAGTCAACAGGTAGTGGTGACGCAGTTGTTGGCGCGTTTGGAGG
CGTGGAATGCGACGGCGGTCCCTGCTCACTACCCGGGCCCGGATAAGAGG
TGCGATCCTTCTTTGCATGGCCATGTGTTTACGGCGTGGGGGGAGGAGGA
GACCGGGTAAATGGGGTTGCGGCGGTGGAGGCATGCCACCGCCGCGGTAG
TTGCAAGCATCTTCACTGTCGCCTCTTCCGATTGCTGCGGGATTGCTGCT
GCTGTCACTGCCTCCACCCAAGACAAGCAATCAGCCCTCACCACACCACC
ACATATCATCTATATTCTGGCGGATGATCTGGGCTGGAATGATGTCGGCT
GGATGAATAAGGCCAACGAAGACATTATCCAAACCCCGAACTTGGACCAA
CTCGCCGCTGATGGCGTAATCCTCAAATCCTTCTACACCCAAAGCGTCTG
CACACCTACGCGTGCCTCCTTGTTGACTGGAAAATACACCATCCATTTGG
GCCTACAACACTCCATCGTGCAGAGCGGCCAATCTTCCGCCCTTGGCACC
GAGCATCGCATGCTTGCCGAGGAATTGAAAGACCGTAATTACGCGACGCA
CATGGTGGGGAAGTGGCATTTGGGTTACTATCAAAGAAAATTCCAGCCAT
TGCAACGTGGGTTTGATACTTTCAAGGGGATGTTGACGGGGGCTGAGTAT
TATTTCTCACATGTGGCACGGTGCGAGTTCCCCTTCTATGAATTTAAAGG
ATCAACGTCTGGATGGGGCCTGGATTGGTTTGATGGGGAGGAGGCAGTGT
GGGAGGACGAGGGGATATATAGCACTGATTTGTTGACACAGCGAGCGGAA
GAGATCATTAGATCGCATTCTCCTTCTGGCTCGTCGGTTTCGATGGAGGG
AGAGACAGAGAAGCCTTTGTTTTTGTACTTGCCTTATCAAGCCGTCCATG
GGCGGTTGCAGGCCCCGGAGGGAGATATTGATCGGTTTTCACATGTGAAG
GATAAGAATCGAAGGACATACGCGGCAATGGTGTGGAAGCTTGATCAGGG
TGTGGGAAACGTAACGAAAGCGTTGAAACAGGCAGGGCTGTATGAGAATA
GTGTAATTGTTTTCACGACTGATAATGGGGGGGATCCGGTTTTTGGCGGG
AACAATTGGCCGTTACGGGGGGAAAAAGGGAGTTACTGGGAGGGTGGGAT
AAGGGGAGCGGCGTTTGTGCACTCGCCGTTGTTGGAGGAAAGGGGGGTGG
AGAGGGAGAATTTGATGCATGTTGTTGATTGGTTCCCCACAATTCTTGGT
AGCAATAGTAGTAGCCGCTGTATCACGGACAACATTGACGGAATCGACCA
ATGGGCCACCATCTCCCACGGTGCACCCGCCCCACGCCTCGAGCTCCTTC
ATACGATCGATCCCCTCGGTCTCGATACTGGTGATCCATTCACAGGTACC
AAACAAGCCGCCATCCGTCAAGGACCTTGGAAGCTGCTTGTAGGCGCTCC
AGGACAAAACATACATCAAGATAAATGGACCCCTCCCCCAAATTGGGCTC
CGCCGGACGAGAAGGGCAGGAAGCCCGCGGTGGCGCCTCTGTGTGAAGAT
TGTAAATTTACCAAGGAAAATTTCACGACGGGTGTATGTCTCTTCAATTT
AAAGGATGATCCAGAGGAAAACTGTAATTTAGCGGGGAGTCAACAGGTAG
TGGTGACGCAGTTGTTGGCGCGTTTGGAGGCGTGGAATGCGACGGCGGTC
CCTGCTCACTACCCGGGCCCGGATAAGAGGTGCGATCCTTCTTTGCATGG
CCATGTGTTTACGGCGTGGGGGGAGGAGGAGACCGGGTAA back to top
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