jgi.p|Nanoce1779_2|558004, mRNA_6500 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|558004
Unique Name	mRNA_6500
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1665
Alignment location	scaffold_18:35182..36846 +

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Properties


Property Name	Value
TranscriptId	558090
Track	FilteredModels2
ProteinId	558004

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:35182..36846 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|558004	gene_6500	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|558004	mRNA_6500-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6500	CDS_6500	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:35182..36846+
coding sequence from alignment at scaffold_18:35182..36846+

mRNA sequence

>mRNA_6500 ID=mRNA_6500|Name=jgi.p|Nanoce1779_2|558004|organism=Nannochloropsis oceanica|type=mRNA|length=1665bp
CCGACTCAACGACCCGGGTCCTCGCATCAATGACATTCCCTTGCCACGCT
CACCCACATCACACCACGCAACTCATCATCTCGCCCTTCCACCATCCCAT
TATCCTCCAGACTGGAGTGCGAGCTGTGTGTGCCGGCTGACCTATTGAGG
ATCCGACGTCTAGCTGTTTAAGAGCTTAAAAGCTAAAAGCGCGCGCGTCC
TCTTCCCCCGGCATAGCGACATTTCACACCACGCCGATGACGATGGCAAG
CTCGTTTGCAGAAGGCGCGGCCACAGTCCTGGTAAGACTGCTACAGGAGG
CCGCCAACTCGACCGCTGCAGGAGAAGACGACCCCCCCGCCGCACCCGAC
GACGGCAAGCAGCATTGCAAAATGATGGGAGGAAAGTTTGGCGACCTGGT
GCAGCTGAGCTTGGCCGTTGTGGGGATTGGCGGGTTGGTTATCAAGCGCT
TTCAAGAGACAAATCCGCGGCCTTGGAGGATATGGGGTCTGGACGTGGGG
AAACAGTGCCTGGGCTCATTGTATGCTCATGTCTTGAACATGCTGCTGGC
AATAGGTTTGACGAGCATTGTGGGCGGCGGGGATGAGTGTGCTTGGTACT
TTGTAAATTACTTCATTGATAGCAGCCTGGGGGTACTGCTATGTCTCATT
CTGATAAAGGCAGCGGAGTGGTGGGCGGCGCGGAAGGAGGCCGGGTCCTG
GCAGCGACTGTACATTGCGGACATGGGCAATTACGGTTCGCCCCCCCAGT
GCCGGATCTGGTATTGGCAAACCCTTATTTGGCTTGGCATCGTCACCTTC
TCCAAGTTCGGCCTCTTCTTTTTTATGATTGCGTTTCGGGATCAGTTCGG
GGCATGGGGTCGGTTTTTGTTTAAGCCTTTGCAAGAACATCCGAATGCGG
AGCTAATTATCGTCATGGTCATCGTCCCGGGCGTCTTCAACGTTGCACAA
TTTTGGATACTTGACAACTTGCTCAAAAGCAGCACGACAGAAGTTGAATC
GCCTTCTTTGAGTCCTGACAAGGGCCAGCATTTTAAAGTTAACTACGAGC
CGATTCTGGAGGGACCAGGCGGTGCTGTTGCCGGTGCTGGTGCTATTGGA
GGACGACGACGGAAGGGGTCAGGAGGGGCGTTGGACTGGTTCTCGACCAC
TACGTCTTCTTCATGGAATTGGGGTACTGGTGCTCCGACGGGTGGGCCGG
GACAAGGGCGAGGGGCAGGGGCACGAATGGGCACACCGCCCGCCCCTGGT
GGAGGGCCGGGGATGAGTACGAGAACTTTCTACAAGCCACCGGTAGAGGT
GGCGAAACCTTTAGACCCGAATGTGCCGGCATGGATGACAACGAGCACGA
ATTCGACAATTTTACCTCCGAGACGACCGTATGATAGTGATGACATGGAG
GCGAACGGTGTAGCGTTGGCGTAGGGATTGAGGGAGGGAGGGAGAGAGGA
AAGGGAGGTTTGTAACATACATATGCAGGGACTAATCAAACGGTGATAGG
TACAGGAAAACCAATTTAAAACTGGAAGATAAGGGAAATTAAAACTAGAG
AGTAACAGTGTATTTGTTGTGTTATGGTGTGTCATATTGTCGAAATCTGA
TTCACCCAAGAGGCGAGAAACGGAGCCAGGACTAATGAAGAAGCCAAGAT
TACGCAGTCTGACCA

protein sequence of jgi.p|Nanoce1779_2|558004

>mRNA_6500-protein ID=mRNA_6500-protein|Name=jgi.p|Nanoce1779_2|558004|organism=Nannochloropsis oceanica|type=polypeptide|length=396bp
MTMASSFAEGAATVLVRLLQEAANSTAAGEDDPPAAPDDGKQHCKMMGGK
FGDLVQLSLAVVGIGGLVIKRFQETNPRPWRIWGLDVGKQCLGSLYAHVL
NMLLAIGLTSIVGGGDECAWYFVNYFIDSSLGVLLCLILIKAAEWWAARK
EAGSWQRLYIADMGNYGSPPQCRIWYWQTLIWLGIVTFSKFGLFFFMIAF
RDQFGAWGRFLFKPLQEHPNAELIIVMVIVPGVFNVAQFWILDNLLKSST
TEVESPSLSPDKGQHFKVNYEPILEGPGGAVAGAGAIGGRRRKGSGGALD
WFSTTTSSSWNWGTGAPTGGPGQGRGAGARMGTPPAPGGGPGMSTRTFYK
PPVEVAKPLDPNVPAWMTTSTNSTILPPRRPYDSDDMEANGVALA*

mRNA from alignment at scaffold_18:35182..36846+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6500 ID=mRNA_6500|Name=jgi.p|Nanoce1779_2|558004|organism=Nannochloropsis oceanica|type=mRNA|length=1665bp|location=Sequence derived from alignment at scaffold_18:35182..36846+ (Nannochloropsis oceanica)
CCGACTCAACGACCCGGGTCCTCGCATCAATGACATTCCCTTGCCACGCT
CACCCACATCACACCACGCAACTCATCATCTCGCCCTTCCACCATCCCAT
TATCCTCCAGACTGGAGTGCGAGCTGTGTGTGCCGGCTGACCTATTGAGG
ATCCGACGTCTAGCTGTTTAAGAGCTTAAAAGCTAAAAGCGCGCGCGTCC
TCTTCCCCCGGCATAGCGACATTTCACACCACGCCGATGACGATGGCAAG
CTCGTTTGCAGAAGGCGCGGCCACAGTCCTGGTAAGACTGCTACAGGAGG
CCGCCAACTCGACCGCTGCAGGAGAAGACGACCCCCCCGCCGCACCCGAC
GACGGCAAGCAGCATTGCAAAATGATGGGAGGAAAGTTTGGCGACCTGGT
GCAGCTGAGCTTGGCCGTTGTGGGGATTGGCGGGTTGGTTATCAAGCGCT
TTCAAGAGACAAATCCGCGGCCTTGGAGGATATGGGGTCTGGACGTGGGG
AAACAGTGCCTGGGCTCATTGTATGCTCATGTCTTGAACATGCTGCTGGC
AATAGGTTTGACGAGCATTGTGGGCGGCGGGGATGAGTGTGCTTGGTACT
TTGTAAATTACTTCATTGATAGCAGCCTGGGGGTACTGCTATGTCTCATT
CTGATAAAGGCAGCGGAGTGGTGGGCGGCGCGGAAGGAGGCCGGGTCCTG
GCAGCGACTGTACATTGCGGACATGGGCAATTACGGTTCGCCCCCCCAGT
GCCGGATCTGGTATTGGCAAACCCTTATTTGGCTTGGCATCGTCACCTTC
TCCAAGTTCGGCCTCTTCTTTTTTATGATTGCGTTTCGGGATCAGTTCGG
GGCATGGGGTCGGTTTTTGTTTAAGCCTTTGCAAGAACATCCGAATGCGG
AGCTAATTATCGTCATGGTCATCGTCCCGGGCGTCTTCAACGTTGCACAA
TTTTGGATACTTGACAACTTGCTCAAAAGCAGCACGACAGAAGTTGAATC
GCCTTCTTTGAGTCCTGACAAGGGCCAGCATTTTAAAGTTAACTACGAGC
CGATTCTGGAGGGACCAGGCGGTGCTGTTGCCGGTGCTGGTGCTATTGGA
GGACGACGACGGAAGGGGTCAGGAGGGGCGTTGGACTGGTTCTCGACCAC
TACGTCTTCTTCATGGAATTGGGGTACTGGTGCTCCGACGGGTGGGCCGG
GACAAGGGCGAGGGGCAGGGGCACGAATGGGCACACCGCCCGCCCCTGGT
GGAGGGCCGGGGATGAGTACGAGAACTTTCTACAAGCCACCGGTAGAGGT
GGCGAAACCTTTAGACCCGAATGTGCCGGCATGGATGACAACGAGCACGA
ATTCGACAATTTTACCTCCGAGACGACCGTATGATAGTGATGACATGGAG
GCGAACGGTGTAGCGTTGGCGTAGGGATTGAGGGAGGGAGGGAGAGAGGA
AAGGGAGGTTTGTAACATACATATGCAGGGACTAATCAAACGGTGATAGG
TACAGGAAAACCAATTTAAAACTGGAAGATAAGGGAAATTAAAACTAGAG
AGTAACAGTGTATTTGTTGTGTTATGGTGTGTCATATTGTCGAAATCTGA
TTCACCCAAGAGGCGAGAAACGGAGCCAGGACTAATGAAGAAGCCAAGAT
TACGCAGTCTGACCA

Coding sequence (CDS) from alignment at scaffold_18:35182..36846+

>mRNA_6500 ID=mRNA_6500|Name=jgi.p|Nanoce1779_2|558004|organism=Nannochloropsis oceanica|type=CDS|length=1188bp|location=Sequence derived from alignment at scaffold_18:35182..36846+ (Nannochloropsis oceanica)
ATGACGATGGCAAGCTCGTTTGCAGAAGGCGCGGCCACAGTCCTGGTAAG
ACTGCTACAGGAGGCCGCCAACTCGACCGCTGCAGGAGAAGACGACCCCC
CCGCCGCACCCGACGACGGCAAGCAGCATTGCAAAATGATGGGAGGAAAG
TTTGGCGACCTGGTGCAGCTGAGCTTGGCCGTTGTGGGGATTGGCGGGTT
GGTTATCAAGCGCTTTCAAGAGACAAATCCGCGGCCTTGGAGGATATGGG
GTCTGGACGTGGGGAAACAGTGCCTGGGCTCATTGTATGCTCATGTCTTG
AACATGCTGCTGGCAATAGGTTTGACGAGCATTGTGGGCGGCGGGGATGA
GTGTGCTTGGTACTTTGTAAATTACTTCATTGATAGCAGCCTGGGGGTAC
TGCTATGTCTCATTCTGATAAAGGCAGCGGAGTGGTGGGCGGCGCGGAAG
GAGGCCGGGTCCTGGCAGCGACTGTACATTGCGGACATGGGCAATTACGG
TTCGCCCCCCCAGTGCCGGATCTGGTATTGGCAAACCCTTATTTGGCTTG
GCATCGTCACCTTCTCCAAGTTCGGCCTCTTCTTTTTTATGATTGCGTTT
CGGGATCAGTTCGGGGCATGGGGTCGGTTTTTGTTTAAGCCTTTGCAAGA
ACATCCGAATGCGGAGCTAATTATCGTCATGGTCATCGTCCCGGGCGTCT
TCAACGTTGCACAATTTTGGATACTTGACAACTTGCTCAAAAGCAGCACG
ACAGAAGTTGAATCGCCTTCTTTGAGTCCTGACAAGGGCCAGCATTTTAA
AGTTAACTACGAGCCGATTCTGGAGGGACCAGGCGGTGCTGTTGCCGGTG
CTGGTGCTATTGGAGGACGACGACGGAAGGGGTCAGGAGGGGCGTTGGAC
TGGTTCTCGACCACTACGTCTTCTTCATGGAATTGGGGTACTGGTGCTCC
GACGGGTGGGCCGGGACAAGGGCGAGGGGCAGGGGCACGAATGGGCACAC
CGCCCGCCCCTGGTGGAGGGCCGGGGATGAGTACGAGAACTTTCTACAAG
CCACCGGTAGAGGTGGCGAAACCTTTAGACCCGAATGTGCCGGCATGGAT
GACAACGAGCACGAATTCGACAATTTTACCTCCGAGACGACCGTATGATA
GTGATGACATGGAGGCGAACGGTGTAGCGTTGGCGTAG

Synonyms

Publications