jgi.p|Nanoce1779_2|573648, mRNA_650 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573648
Unique NamemRNA_650
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1653
Alignment locationscaffold_2:94801..96453 -

Link to JBrowse

Properties
Property NameValue
TranscriptId573734
TrackFilteredModels2
ProteinId573648
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:94801..96453 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573648gene_650Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573648mRNA_650-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_650CDS_650Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_650 ID=mRNA_650|Name=jgi.p|Nanoce1779_2|573648|organism=Nannochloropsis oceanica|type=mRNA|length=1653bp
AGGCACAAAAAAATGCCGTTTATCGACATAGGCTGCAACCTGACCGACAG
CATGTACCAAGGCAAGTACAATAACAGCCAGAAGCACCCGCCAGACTTGG
ACCATGTGCTGGCACGAGCCTGGGAGGTGGGTTTGAGCCACGTTGTCATC
ACGGCCGGCACTTTGGACGAGGCGCGCAAGGCTTTGGAATTAGCAAGCGA
CGATCGTCGTCTATTCACCACCGTTGGCGTGCACCCCACGCGTTGCAAAG
AGCTTGTGGAGGCCGAAGAAGGTATGGCAGCATACATCGACACCTTGTTG
GATTTAGCCAGGGAAGGCCAAAAAAATGGCAAAGTTGTGGCCATTGGCGA
GTGTGGCTTGGATTATGATCGACTTGGTTTTTGCGACCAAGCCACTCAAC
TCGCGGGATTCGAAGCGCAGTTTGCCTTGGCGGAGGAGACGGGCCTACCC
ATGTTTTTACACAACCGCAATTGTGCGAACGATTTTGTCCAGACGCTGCA
AAGACATCGACACCGATTCAGCCAGGGCGTGGTTCATTCTTTTACAGGAC
CCCCCGCAGAAGTGAAGGCATTGCTAAGTATGGAAAGGGTGTATATTGGA
TTGAACGGGTGCTCTCTCAAAACGGAGGAGCAGCTCACGACCATCCAAAC
TCATCTTCCGCTGGGACGCACGCTGCTGGAGACGGATGCCCCGTGGTGCG
ATGTGCGGCCCACGCATGCAGGTGCCAGGTATTTGCAGTCACGGGAGGAG
AAGGGCATGTTTGGTACGGTCAAGAAGGAGAAATGGTCCAAGGATAAGTG
TGTAAAAGGACGGAATGAGCCATGTCACATCCGAGAGGTGGCAGCTGTTC
TGGCGGGCGTGCATGGTGTCCCCCTTGAGCAGGTAATCGAGGTATGCTAC
GCCAACACTCTTACCTGCTTTCCCGGGCTGGTGCGTCAGGAGGACGCAAA
GGAGGAGGAAGGACAAAGAGAAGGGACACAAAACCAAGTCGATATAGAAA
GCAAATGAAATCAGTACTATAGGTGAAAAGAAAATTACATGCTTTAATCA
TTACAACCTCCGGAAGTCCTCCCTCTCCTCGTTTAAAAACAAAATCCCGA
AAGCCTTATTGTAAAAGTCCTGATCCAGTCTAACGGCTGCCGCACAGTCT
GGACCGAAGGTGCACTCAAGTAACTTAGGTTGAAGGTCCTTTGTCACCAT
CACATCCACCCCATAAAACGAGCACATGTGCCGTGCTTCCTCTCTCCCTG
CCTGCTCCAAAATTAAAGGCGCGGCAGCCTCGAACAGTGCCTTGACGATA
GCATCCACCTTGACGTCAACGACAGACCAGGGTACTCCCCCATTATCCCT
TTGGAAAGCCTCGAGAAAGTCGGCCTCGCTCACGGGGTTTTGTGTATACC
CTGCATAGTCCATGACTGTAAAATGCGCCTGTTTGTGGAGAGTGTGACAG
AAAAGGGAAGGAGGAAGGGAAGAAAGGAGAGTGGTGGATGATGTGAAAGG
ACGAGCGGGTTGTGACACAATATGGACCGCAATCTGAGGCGGGAATGCCT
CTTACATATCCTCTAAGACGATGTTTTCTCTCTTTCCCCATGCTTCATCC
TCGTCTGCCGTCAGCACAACTCCTCCTTCAACCCCCCCTTTCCAAAGAAT
GAT
back to top

protein sequence of jgi.p|Nanoce1779_2|573648

>mRNA_650-protein ID=mRNA_650-protein|Name=jgi.p|Nanoce1779_2|573648|organism=Nannochloropsis oceanica|type=polypeptide|length=332bp
MPFIDIGCNLTDSMYQGKYNNSQKHPPDLDHVLARAWEVGLSHVVITAGT
LDEARKALELASDDRRLFTTVGVHPTRCKELVEAEEGMAAYIDTLLDLAR
EGQKNGKVVAIGECGLDYDRLGFCDQATQLAGFEAQFALAEETGLPMFLH
NRNCANDFVQTLQRHRHRFSQGVVHSFTGPPAEVKALLSMERVYIGLNGC
SLKTEEQLTTIQTHLPLGRTLLETDAPWCDVRPTHAGARYLQSREEKGMF
GTVKKEKWSKDKCVKGRNEPCHIREVAAVLAGVHGVPLEQVIEVCYANTL
TCFPGLVRQEDAKEEEGQREGTQNQVDIESK*
back to top

mRNA from alignment at scaffold_2:94801..96453-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_650 ID=mRNA_650|Name=jgi.p|Nanoce1779_2|573648|organism=Nannochloropsis oceanica|type=mRNA|length=1653bp|location=Sequence derived from alignment at scaffold_2:94801..96453- (Nannochloropsis oceanica)
AGGCACAAAAAAATGCCGTTTATCGACATAGGCTGCAACCTGACCGACAG
CATGTACCAAGGCAAGTACAATAACAGCCAGAAGCACCCGCCAGACTTGG
ACCATGTGCTGGCACGAGCCTGGGAGGTGGGTTTGAGCCACGTTGTCATC
ACGGCCGGCACTTTGGACGAGGCGCGCAAGGCTTTGGAATTAGCAAGCGA
CGATCGTCGTCTATTCACCACCGTTGGCGTGCACCCCACGCGTTGCAAAG
AGCTTGTGGAGGCCGAAGAAGGTATGGCAGCATACATCGACACCTTGTTG
GATTTAGCCAGGGAAGGCCAAAAAAATGGCAAAGTTGTGGCCATTGGCGA
GTGTGGCTTGGATTATGATCGACTTGGTTTTTGCGACCAAGCCACTCAAC
TCGCGGGATTCGAAGCGCAGTTTGCCTTGGCGGAGGAGACGGGCCTACCC
ATGTTTTTACACAACCGCAATTGTGCGAACGATTTTGTCCAGACGCTGCA
AAGACATCGACACCGATTCAGCCAGGGCGTGGTTCATTCTTTTACAGGAC
CCCCCGCAGAAGTGAAGGCATTGCTAAGTATGGAAAGGGTGTATATTGGA
TTGAACGGGTGCTCTCTCAAAACGGAGGAGCAGCTCACGACCATCCAAAC
TCATCTTCCGCTGGGACGCACGCTGCTGGAGACGGATGCCCCGTGGTGCG
ATGTGCGGCCCACGCATGCAGGTGCCAGGTATTTGCAGTCACGGGAGGAG
AAGGGCATGTTTGGTACGGTCAAGAAGGAGAAATGGTCCAAGGATAAGTG
TGTAAAAGGACGGAATGAGCCATGTCACATCCGAGAGGTGGCAGCTGTTC
TGGCGGGCGTGCATGGTGTCCCCCTTGAGCAGGTAATCGAGGTATGCTAC
GCCAACACTCTTACCTGCTTTCCCGGGCTGGTGCGTCAGGAGGACGCAAA
GGAGGAGGAAGGACAAAGAGAAGGGACACAAAACCAAGTCGATATAGAAA
GCAAATGAAATCAGTACTATAGGTGAAAAGAAAATTACATGCTTTAATCA
TTACAACCTCCGGAAGTCCTCCCTCTCCTCGTTTAAAAACAAAATCCCGA
AAGCCTTATTGTAAAAGTCCTGATCCAGTCTAACGGCTGCCGCACAGTCT
GGACCGAAGGTGCACTCAAGTAACTTAGGTTGAAGGTCCTTTGTCACCAT
CACATCCACCCCATAAAACGAGCACATGTGCCGTGCTTCCTCTCTCCCTG
CCTGCTCCAAAATTAAAGGCGCGGCAGCCTCGAACAGTGCCTTGACGATA
GCATCCACCTTGACGTCAACGACAGACCAGGGTACTCCCCCATTATCCCT
TTGGAAAGCCTCGAGAAAGTCGGCCTCGCTCACGGGGTTTTGTGTATACC
CTGCATAGTCCATGACTGTAAAATGCGCCTGTTTGTGGAGAGTGTGACAG
AAAAGGGAAGGAGGAAGGGAAGAAAGGAGAGTGGTGGATGATGTGAAAGG
ACGAGCGGGTTGTGACACAATATGGACCGCAATCTGAGGCGGGAATGCCT
CTTACATATCCTCTAAGACGATGTTTTCTCTCTTTCCCCATGCTTCATCC
TCGTCTGCCGTCAGCACAACTCCTCCTTCAACCCCCCCTTTCCAAAGAAT
GAT
back to top

Coding sequence (CDS) from alignment at scaffold_2:94801..96453-

>mRNA_650 ID=mRNA_650|Name=jgi.p|Nanoce1779_2|573648|organism=Nannochloropsis oceanica|type=CDS|length=996bp|location=Sequence derived from alignment at scaffold_2:94801..96453- (Nannochloropsis oceanica)
ATGCCGTTTATCGACATAGGCTGCAACCTGACCGACAGCATGTACCAAGG
CAAGTACAATAACAGCCAGAAGCACCCGCCAGACTTGGACCATGTGCTGG
CACGAGCCTGGGAGGTGGGTTTGAGCCACGTTGTCATCACGGCCGGCACT
TTGGACGAGGCGCGCAAGGCTTTGGAATTAGCAAGCGACGATCGTCGTCT
ATTCACCACCGTTGGCGTGCACCCCACGCGTTGCAAAGAGCTTGTGGAGG
CCGAAGAAGGTATGGCAGCATACATCGACACCTTGTTGGATTTAGCCAGG
GAAGGCCAAAAAAATGGCAAAGTTGTGGCCATTGGCGAGTGTGGCTTGGA
TTATGATCGACTTGGTTTTTGCGACCAAGCCACTCAACTCGCGGGATTCG
AAGCGCAGTTTGCCTTGGCGGAGGAGACGGGCCTACCCATGTTTTTACAC
AACCGCAATTGTGCGAACGATTTTGTCCAGACGCTGCAAAGACATCGACA
CCGATTCAGCCAGGGCGTGGTTCATTCTTTTACAGGACCCCCCGCAGAAG
TGAAGGCATTGCTAAGTATGGAAAGGGTGTATATTGGATTGAACGGGTGC
TCTCTCAAAACGGAGGAGCAGCTCACGACCATCCAAACTCATCTTCCGCT
GGGACGCACGCTGCTGGAGACGGATGCCCCGTGGTGCGATGTGCGGCCCA
CGCATGCAGGTGCCAGGTATTTGCAGTCACGGGAGGAGAAGGGCATGTTT
GGTACGGTCAAGAAGGAGAAATGGTCCAAGGATAAGTGTGTAAAAGGACG
GAATGAGCCATGTCACATCCGAGAGGTGGCAGCTGTTCTGGCGGGCGTGC
ATGGTGTCCCCCTTGAGCAGGTAATCGAGGTATGCTACGCCAACACTCTT
ACCTGCTTTCCCGGGCTGGTGCGTCAGGAGGACGCAAAGGAGGAGGAAGG
ACAAAGAGAAGGGACACAAAACCAAGTCGATATAGAAAGCAAATGA
back to top
Synonyms
Publications