jgi.p|Nanoce1779_2|576089, mRNA_65 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576089
Unique Name	mRNA_65
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	685
Alignment location	scaffold_3:177974..179312 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	576175
Track	FilteredModels2
ProteinId	576089

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:177974..179312 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576089	gene_65	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576089	mRNA_65-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_65	CDS_65	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:177974..179312+
coding sequence from alignment at scaffold_3:177974..179312+

mRNA sequence

>mRNA_65 ID=mRNA_65|Name=jgi.p|Nanoce1779_2|576089|organism=Nannochloropsis oceanica|type=mRNA|length=685bp
ACAGCTAGAGTCTTGCTCTGTCGTTCTTCTTGCTTCAAGCGCCCTACCAC
AACCACCTCACTATGCCGTCCTGGGCGTCATCCGTCCTTTTTTTGGCAGC
TGCTGCCGCCGTCACCAGTACAACGCGTGCCTTCATGCCGCCTGCCACGC
CTGGAACACCGGCCCCGAACTCCAGCCCCAGAGAACCAGCAGCAGCCAAA
GAAACCAACAAAGCCCCGGCGCTCGTGGCGCCCGCAGATCTGGTGCGCTT
GCAAGCTGAGCCGCAAAGAGCCGGTGGCGCCGCCCCCGCAGCTGGCCCTG
ACCCAGCCGTCACTTTGAAGGCCATGCAGAAATTTGCGGAAAAATACTGC
GAGATCAGTGACACGTACTTCTGCTCCGACTTAGAGATCGCCGCTACCGT
TGTCAAGGGCCTGGCCAAGCACAAGGACGAACTAGGCGCTCCTCTCTGTC
CATGCCGGCACTATGAAGACAAGGCAGCAGAGGTGCAGATGGCGTACTGG
AATTGTCCGTGCGTCCCAATGCGGGAAAGGAAAGAGTGTCATTGCATGTT
GTTTTTAACACCCGACACCCCCTTTGTGGGCACAGAGCAGAAGCTGCCGG
ACGAGATGCTGAAGGATGAGGGATTAGGCCTGAAGTAAGGAGGGAGGGAG
GGAGGGAAGGAGAGGAGGGGAGACAGTACACCGTC

protein sequence of jgi.p|Nanoce1779_2|576089

>mRNA_65-protein ID=mRNA_65-protein|Name=jgi.p|Nanoce1779_2|576089|organism=Nannochloropsis oceanica|type=polypeptide|length=192bp
MPSWASSVLFLAAAAAVTSTTRAFMPPATPGTPAPNSSPREPAAAKETNK
APALVAPADLVRLQAEPQRAGGAAPAAGPDPAVTLKAMQKFAEKYCEISD
TYFCSDLEIAATVVKGLAKHKDELGAPLCPCRHYEDKAAEVQMAYWNCPC
VPMRERKECHCMLFLTPDTPFVGTEQKLPDEMLKDEGLGLK*

mRNA from alignment at scaffold_3:177974..179312+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_65 ID=mRNA_65|Name=jgi.p|Nanoce1779_2|576089|organism=Nannochloropsis oceanica|type=mRNA|length=1339bp|location=Sequence derived from alignment at scaffold_3:177974..179312+ (Nannochloropsis oceanica)
ACAGCTAGAGTCTTGCTCTGTCGTTCTTCTTGCTTCAAGCGCCCTACCAC
AACCACCTCACTATGCCGTCCTGGGCGTCATCCGTCCTTTTTTTGGCAGC
TGCTGCCGCCGTCACCAGTACAACGCGTGCCTTCATGCCGCCTGCCACGC
CTGGAACACCGGCCCCGAACTCCAGCCCCAGAGGTAGGCTAGGCATTGGG
ACGGAAAGGGAAGGGGGAGGACGGGCCGGGGCTACCGCAACCTGAGAGCA
ATGCCAGGCATTAAGGTGAAAGGACAACACCTCAACGCACCCACACACTC
ACACGTTGTCCTGATAAAACGCATATACAGAACCAGCAGCAGCCAAAGAA
ACCAACAAAGCCCCGGCGCTCGTGGCGCCCGCAGATCTGGTGCGCTTGCA
AGCTGAGCCGGTATGGACCTTTCTCTCTCCCTCCCTTCCTCCCCTTCTCT
CTCCCTCTTTCCCTGTCCTCGTCCTCGTCCTTCCATCGTTCACTTCACTT
TAGTGCACACGTATTGCATCATTCATCCGCTGCTGTCTCAATCATGACTA
ACAGCCGCATGATCTCACCCTCCCCTCCCCCCCCCCCCCTTCCTCCCTTC
GTTACTTTTTTCTTTCCTTCCTTCCCTTTCAAGCAAAGAGCCGGTGGCGC
CGCCCCCGCAGCTGGCCCTGACCCAGCCGTCACTTTGAAGGCCATGCAGA
AATTTGCGGAAAAATACTGCGAGATCAGTGACACGTACTTCTGCTCCGAC
TTAGAGATCGCCGCTACCGTTGTCAAGGGTAAATATCCCTCCCTACCTCC
CTCCCTCCCTCCCTACCTCCTGTCTCTCGAATGATGAGCGTGCATGGATA
GATGTGCCCGGAGTATCTTTTTTTCCATGTGTTAATTGGGAGAGAAAAGT
CCTGAAGGTGCCGCACTGCCTCCTGTCCTTCCACTCTTACACTTAACCCT
CTTTCCCTCTTTATATTATCCACTCTTACACTCAACCCTCTTTCCCCTCT
TTATATAAACATCCACTCTGACGCCCAACCCTCCCTGACATCCGTCCAAA
CACTTATTGAAGGCCTGGCCAAGCACAAGGACGAACTAGGCGCTCCTCTC
TGTCCATGCCGGCACTATGAAGACAAGGCAGCAGAGGTGCAGATGGCGTA
CTGGAATTGTCCGTGCGTCCCAATGCGGGAAAGGAAAGAGTGTCATTGCA
TGTTGTTTTTAACACCCGACACCCCCTTTGTGGGCACAGAGCAGAAGCTG
CCGGACGAGATGCTGAAGGATGAGGGATTAGGCCTGAAGTAAGGAGGGAG
GGAGGGAGGGAAGGAGAGGAGGGGAGACAGTACACCGTC

Coding sequence (CDS) from alignment at scaffold_3:177974..179312+

>mRNA_65 ID=mRNA_65|Name=jgi.p|Nanoce1779_2|576089|organism=Nannochloropsis oceanica|type=CDS|length=2304bp|location=Sequence derived from alignment at scaffold_3:177974..179312+ (Nannochloropsis oceanica)
ATGCCGTCCTGGGCGTCATCCGTCCTTTTTTTGGCAGCTGCTGCCGCCGT
CACCAGTACAACGCGTGCCTTCATGCCGCCTGCCACGCCTGGAACACCGG
CCCCGAACTCCAGCCCCAGAGAACCAGCAGCAGCCAAAGAAACCAACAAA
GCCCCGGCGCTCGTGGCGCCCGCAGATCTGGTGCGCTTGCAAGCTGAGCC
GCAAAGAGCCGGTGGCGCCGCCCCCGCAGCTGGCCCTGACCCAGCCGTCA
CTTTGAAGGCCATGCAGAAATTTGCGGAAAAATACTGCGAGATCAGTGAC
ACGTACTTCTGCTCCGACTTAGAGATCGCCGCTACCGTTGTCAAGGGCCT
GGCCAAGCACAAGGACGAACTAGGCGCTCCTCTCTGTCCATGCCGGCACT
ATGAAGACAAGGCAGCAGAGGTGCAGATGGCGTACTGGAATTGTCCGTGC
GTCCCAATGCGGGAAAGGAAAGAGTGTCATTGCATGTTGTTTTTAACACC
CGACACCCCCTTTGTGGGCACAGAGCAGAAGCTGCCGGACGAGATGCTGA
AGGATGAGGGATTAGGCCTGAAGTAAATGCCGTCCTGGGCGTCATCCGTC
CTTTTTTTGGCAGCTGCTGCCGCCGTCACCAGTACAACGCGTGCCTTCAT
GCCGCCTGCCACGCCTGGAACACCGGCCCCGAACTCCAGCCCCAGAGAAC
CAGCAGCAGCCAAAGAAACCAACAAAGCCCCGGCGCTCGTGGCGCCCGCA
GATCTGGTGCGCTTGCAAGCTGAGCCGCAAAGAGCCGGTGGCGCCGCCCC
CGCAGCTGGCCCTGACCCAGCCGTCACTTTGAAGGCCATGCAGAAATTTG
CGGAAAAATACTGCGAGATCAGTGACACGTACTTCTGCTCCGACTTAGAG
ATCGCCGCTACCGTTGTCAAGGGCCTGGCCAAGCACAAGGACGAACTAGG
CGCTCCTCTCTGTCCATGCCGGCACTATGAAGACAAGGCAGCAGAGGTGC
AGATGGCGTACTGGAATTGTCCGTGCGTCCCAATGCGGGAAAGGAAAGAG
TGTCATTGCATGTTGTTTTTAACACCCGACACCCCCTTTGTGGGCACAGA
GCAGAAGCTGCCGGACGAGATGCTGAAGGATGAGGGATTAGGCCTGAAGT
AAATGCCGTCCTGGGCGTCATCCGTCCTTTTTTTGGCAGCTGCTGCCGCC
GTCACCAGTACAACGCGTGCCTTCATGCCGCCTGCCACGCCTGGAACACC
GGCCCCGAACTCCAGCCCCAGAGAACCAGCAGCAGCCAAAGAAACCAACA
AAGCCCCGGCGCTCGTGGCGCCCGCAGATCTGGTGCGCTTGCAAGCTGAG
CCGCAAAGAGCCGGTGGCGCCGCCCCCGCAGCTGGCCCTGACCCAGCCGT
CACTTTGAAGGCCATGCAGAAATTTGCGGAAAAATACTGCGAGATCAGTG
ACACGTACTTCTGCTCCGACTTAGAGATCGCCGCTACCGTTGTCAAGGGC
CTGGCCAAGCACAAGGACGAACTAGGCGCTCCTCTCTGTCCATGCCGGCA
CTATGAAGACAAGGCAGCAGAGGTGCAGATGGCGTACTGGAATTGTCCGT
GCGTCCCAATGCGGGAAAGGAAAGAGTGTCATTGCATGTTGTTTTTAACA
CCCGACACCCCCTTTGTGGGCACAGAGCAGAAGCTGCCGGACGAGATGCT
GAAGGATGAGGGATTAGGCCTGAAGTAAATGCCGTCCTGGGCGTCATCCG
TCCTTTTTTTGGCAGCTGCTGCCGCCGTCACCAGTACAACGCGTGCCTTC
ATGCCGCCTGCCACGCCTGGAACACCGGCCCCGAACTCCAGCCCCAGAGA
ACCAGCAGCAGCCAAAGAAACCAACAAAGCCCCGGCGCTCGTGGCGCCCG
CAGATCTGGTGCGCTTGCAAGCTGAGCCGCAAAGAGCCGGTGGCGCCGCC
CCCGCAGCTGGCCCTGACCCAGCCGTCACTTTGAAGGCCATGCAGAAATT
TGCGGAAAAATACTGCGAGATCAGTGACACGTACTTCTGCTCCGACTTAG
AGATCGCCGCTACCGTTGTCAAGGGCCTGGCCAAGCACAAGGACGAACTA
GGCGCTCCTCTCTGTCCATGCCGGCACTATGAAGACAAGGCAGCAGAGGT
GCAGATGGCGTACTGGAATTGTCCGTGCGTCCCAATGCGGGAAAGGAAAG
AGTGTCATTGCATGTTGTTTTTAACACCCGACACCCCCTTTGTGGGCACA
GAGCAGAAGCTGCCGGACGAGATGCTGAAGGATGAGGGATTAGGCCTGAA
GTAA

Synonyms

Publications