jgi.p|Nanoce1779_2|597170, mRNA_6496 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597170
Unique NamemRNA_6496
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1411
Alignment locationscaffold_18:26210..27620 +

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Properties
Property NameValue
TranscriptId597256
TrackFilteredModels2
ProteinId597170
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:26210..27620 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597170gene_6496Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597170mRNA_6496-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6496CDS_6496Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6496 ID=mRNA_6496|Name=jgi.p|Nanoce1779_2|597170|organism=Nannochloropsis oceanica|type=mRNA|length=1411bp
GCTTTCCACTGACTCGAGGAACTGCCATAGAAGAAGCGACAGCAGCAGCA
GCAGCCGCAGCAGCAGCCTGAGTGCAGCTAGCAGGAGCAGGAGCAGGAGC
AGCAGCGGCAATGAGCCCAGCCAAAAGGAGTTTTTCCGTCTGGCTCAAGG
GAAGATGGAATTCGGGACTGTTGACGAAGTAGAGCTCTTGCTCTGGGAGG
AACCTGCGCTCATCCGTCGATACCTTACCGAGAGGCCTGACCGTGTCTTG
CTTGCTACATGGGACGCGGAGCTGGTGGATCGACAGGACCGTGACGTTTT
TCGCCTTACCACCAAACCCATGTCATTCGTCCATCTCTCCCTCCAGCCAT
CCATCGACGTCCGCCTCACTGCCGCTCCGCCCCTATCCCTTGAAAATGAG
GTTGGCAACGTCGGGGTAGATGGAGGGCAGCATTTACTCCTGGTAGAATC
CCTCGCCCATTCAATGAATGGCATGGAGCAAATCCTCGGCCAACGCTTCG
CTGAGTCCCTGAAAATAGATGTCACCGGCAAGCTTAGAGCTGTCCCTCCG
CCCCTCGGTCCTGGTGGCCTTAGGGGTCCTGGCCCTGTCCGGCTAGTAGG
GGAGGTAGTTTTTGTGACCTCTGGGCAGTTGCCGCTGTTGTTCAGTTTGA
CCCCTCGATCAGTATTGGAAGGGGCGGCAATTGCGATAAACAGGAGAATA
ATGAGCTATGCAAAGGGGAAGTTTGTGAAGAATCTGGCGAAAGACTTTGA
CCGGTGGGCGGCCTCGCCGGCGGGAGCTGCTGCTAGTAGATAGGGAAGGA
GGATGGAGAAGGAGGAAGAGGCAGTAGCAAGAAAAAAAGAGGATCAGCAG
GAGGATGAAGGGAAGGAAACAGATCAGGAAGAAGAAGAGAGTGTGGTGGA
CAAAGGGAGATAGATCCCAGTAGACGGGATTTTGGTGGCGTAAGAGTTTT
TGGTGGGTAAGAAATAATAGTGAGAGGGGTTTTTGATTTTGGACGTGGGG
CGCTGATGTCAGAAAGAAAGTGAAAGAAAGCATTTTTATACTCATGAGAG
GTGGTAGGCGAGAGTATTATGGGCTTGACGGATGAGAGGAGTGAGGGAAC
AGGTTGAAGAGGTCGAACATGCAGAACGGCCGGGGGACTGTTGGGAGAGA
GAGGGAAAGAATGAGAGGGAAGGGAAGGAGTACGGTCTTTTCTGAGGTAG
GAATATATATAAATATATACATCAAAGAACGTTTGTAGAATACATTTTGT
GCATTATGAGTCTAATGACGACAAAAACATGAGAGTTAGCGACGTAGAAG
GAATGGCAGTGTGAGAACAAACAGGCAATGTTGAGAACAAACTAGAAGAA
AAGAATAGCGGAAGAGCGGGCGCAGCAGTAGCAGCAGGCCTGATCTTCCT
GCTCTTTTATA
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protein sequence of jgi.p|Nanoce1779_2|597170

>mRNA_6496-protein ID=mRNA_6496-protein|Name=jgi.p|Nanoce1779_2|597170|organism=Nannochloropsis oceanica|type=polypeptide|length=213bp
MEFGTVDEVELLLWEEPALIRRYLTERPDRVLLATWDAELVDRQDRDVFR
LTTKPMSFVHLSLQPSIDVRLTAAPPLSLENEVGNVGVDGGQHLLLVESL
AHSMNGMEQILGQRFAESLKIDVTGKLRAVPPPLGPGGLRGPGPVRLVGE
VVFVTSGQLPLLFSLTPRSVLEGAAIAINRRIMSYAKGKFVKNLAKDFDR
WAASPAGAAASR*
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mRNA from alignment at scaffold_18:26210..27620+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6496 ID=mRNA_6496|Name=jgi.p|Nanoce1779_2|597170|organism=Nannochloropsis oceanica|type=mRNA|length=1411bp|location=Sequence derived from alignment at scaffold_18:26210..27620+ (Nannochloropsis oceanica)
GCTTTCCACTGACTCGAGGAACTGCCATAGAAGAAGCGACAGCAGCAGCA
GCAGCCGCAGCAGCAGCCTGAGTGCAGCTAGCAGGAGCAGGAGCAGGAGC
AGCAGCGGCAATGAGCCCAGCCAAAAGGAGTTTTTCCGTCTGGCTCAAGG
GAAGATGGAATTCGGGACTGTTGACGAAGTAGAGCTCTTGCTCTGGGAGG
AACCTGCGCTCATCCGTCGATACCTTACCGAGAGGCCTGACCGTGTCTTG
CTTGCTACATGGGACGCGGAGCTGGTGGATCGACAGGACCGTGACGTTTT
TCGCCTTACCACCAAACCCATGTCATTCGTCCATCTCTCCCTCCAGCCAT
CCATCGACGTCCGCCTCACTGCCGCTCCGCCCCTATCCCTTGAAAATGAG
GTTGGCAACGTCGGGGTAGATGGAGGGCAGCATTTACTCCTGGTAGAATC
CCTCGCCCATTCAATGAATGGCATGGAGCAAATCCTCGGCCAACGCTTCG
CTGAGTCCCTGAAAATAGATGTCACCGGCAAGCTTAGAGCTGTCCCTCCG
CCCCTCGGTCCTGGTGGCCTTAGGGGTCCTGGCCCTGTCCGGCTAGTAGG
GGAGGTAGTTTTTGTGACCTCTGGGCAGTTGCCGCTGTTGTTCAGTTTGA
CCCCTCGATCAGTATTGGAAGGGGCGGCAATTGCGATAAACAGGAGAATA
ATGAGCTATGCAAAGGGGAAGTTTGTGAAGAATCTGGCGAAAGACTTTGA
CCGGTGGGCGGCCTCGCCGGCGGGAGCTGCTGCTAGTAGATAGGGAAGGA
GGATGGAGAAGGAGGAAGAGGCAGTAGCAAGAAAAAAAGAGGATCAGCAG
GAGGATGAAGGGAAGGAAACAGATCAGGAAGAAGAAGAGAGTGTGGTGGA
CAAAGGGAGATAGATCCCAGTAGACGGGATTTTGGTGGCGTAAGAGTTTT
TGGTGGGTAAGAAATAATAGTGAGAGGGGTTTTTGATTTTGGACGTGGGG
CGCTGATGTCAGAAAGAAAGTGAAAGAAAGCATTTTTATACTCATGAGAG
GTGGTAGGCGAGAGTATTATGGGCTTGACGGATGAGAGGAGTGAGGGAAC
AGGTTGAAGAGGTCGAACATGCAGAACGGCCGGGGGACTGTTGGGAGAGA
GAGGGAAAGAATGAGAGGGAAGGGAAGGAGTACGGTCTTTTCTGAGGTAG
GAATATATATAAATATATACATCAAAGAACGTTTGTAGAATACATTTTGT
GCATTATGAGTCTAATGACGACAAAAACATGAGAGTTAGCGACGTAGAAG
GAATGGCAGTGTGAGAACAAACAGGCAATGTTGAGAACAAACTAGAAGAA
AAGAATAGCGGAAGAGCGGGCGCAGCAGTAGCAGCAGGCCTGATCTTCCT
GCTCTTTTATA
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Coding sequence (CDS) from alignment at scaffold_18:26210..27620+

>mRNA_6496 ID=mRNA_6496|Name=jgi.p|Nanoce1779_2|597170|organism=Nannochloropsis oceanica|type=CDS|length=639bp|location=Sequence derived from alignment at scaffold_18:26210..27620+ (Nannochloropsis oceanica)
ATGGAATTCGGGACTGTTGACGAAGTAGAGCTCTTGCTCTGGGAGGAACC
TGCGCTCATCCGTCGATACCTTACCGAGAGGCCTGACCGTGTCTTGCTTG
CTACATGGGACGCGGAGCTGGTGGATCGACAGGACCGTGACGTTTTTCGC
CTTACCACCAAACCCATGTCATTCGTCCATCTCTCCCTCCAGCCATCCAT
CGACGTCCGCCTCACTGCCGCTCCGCCCCTATCCCTTGAAAATGAGGTTG
GCAACGTCGGGGTAGATGGAGGGCAGCATTTACTCCTGGTAGAATCCCTC
GCCCATTCAATGAATGGCATGGAGCAAATCCTCGGCCAACGCTTCGCTGA
GTCCCTGAAAATAGATGTCACCGGCAAGCTTAGAGCTGTCCCTCCGCCCC
TCGGTCCTGGTGGCCTTAGGGGTCCTGGCCCTGTCCGGCTAGTAGGGGAG
GTAGTTTTTGTGACCTCTGGGCAGTTGCCGCTGTTGTTCAGTTTGACCCC
TCGATCAGTATTGGAAGGGGCGGCAATTGCGATAAACAGGAGAATAATGA
GCTATGCAAAGGGGAAGTTTGTGAAGAATCTGGCGAAAGACTTTGACCGG
TGGGCGGCCTCGCCGGCGGGAGCTGCTGCTAGTAGATAG
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Synonyms
Publications