jgi.p|Nanoce1779_2|597165, mRNA_6494 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597165
Unique NamemRNA_6494
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length853
Alignment locationscaffold_18:23868..24720 -

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Properties
Property NameValue
TranscriptId597251
TrackFilteredModels2
ProteinId597165
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:23868..24720 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597165gene_6494Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597165mRNA_6494-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6494CDS_6494Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6494 ID=mRNA_6494|Name=jgi.p|Nanoce1779_2|597165|organism=Nannochloropsis oceanica|type=mRNA|length=853bp
ATGTATGTAGATGATTGTGAAACTCATGTATGTAGATGATTGTGAAACTC
ATGGAATATGGGAAAAGCCTCATCCATATTAATATCACCCTGACTATTAT
TTTTCTACTATTTTCTCTTTTCTCTTCTTCTCCATCCCTTCCTCTTGTCA
CTTCTCTCCCTTTTCTCTTTGGTGGCCCACCAACCCCCCCCCTCCCCCCC
TTATCCCTTATCGCCGCTTTAAAAATTTTCTTTCGGCGTCTTCGTGCTGC
CTAGCTGTTTTTTTCTCCACCACCCTTCCCCATTATATATTCTGTGGGTT
TACTCTTCCGTACTCGATCTCAGATATACGAGAAGTTACCAGTCTTTACT
CTTGCGTCCCAAAAACAGAGGCGTACTAATTTGCGTGTCCGCACCTCTTC
AGGGGTGTGTGTGCTCTCTCGGTTCATCGGGGGAAGACCGCGAAGAATTT
AGTTCCTTTCAGTTGTCCTACTCTCCCTTCATAGTGAACAGAAGTTGAAG
ATACCCCACCCCTTCCATTTGTCCCTTTCCTGAGGAGGGGGGGCTCGGTC
ATTCCTTTTCCAAAGCACCCACCACACAAGCCCTGCACACACACGCATAT
CTCTCTCTTTATCTCTCTTTCCTTTCCCTTCTTTTATTTTTCTTTCTCCT
TTTCTCTCTCCCCAACCCCTCTGTCTCCAAAACACACACCCAGTACGCTA
CCCGCAAAATTTTCACACACAAAAATCCGCTCTTACTTCCCTACGTATGT
GTATCGTCTTTTTCCTTCTTCTGCCACTTTTTTACTGTTGATGCTACTCT
ACGTCTCCTGCCCTCTGTCTTTCCCATTTCTTGATCAAAATTTCATTTCT
ACT
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protein sequence of jgi.p|Nanoce1779_2|597165

>mRNA_6494-protein ID=mRNA_6494-protein|Name=jgi.p|Nanoce1779_2|597165|organism=Nannochloropsis oceanica|type=polypeptide|length=73bp
MIVKLMEYGKSLIHINITLTIIFLLFSLFSSSPSLPLVTSLPFLFGGPPT
PPLPPLSLIAALKIFFRRLRAA*
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mRNA from alignment at scaffold_18:23868..24720-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6494 ID=mRNA_6494|Name=jgi.p|Nanoce1779_2|597165|organism=Nannochloropsis oceanica|type=mRNA|length=853bp|location=Sequence derived from alignment at scaffold_18:23868..24720- (Nannochloropsis oceanica)
ATGTATGTAGATGATTGTGAAACTCATGTATGTAGATGATTGTGAAACTC
ATGGAATATGGGAAAAGCCTCATCCATATTAATATCACCCTGACTATTAT
TTTTCTACTATTTTCTCTTTTCTCTTCTTCTCCATCCCTTCCTCTTGTCA
CTTCTCTCCCTTTTCTCTTTGGTGGCCCACCAACCCCCCCCCTCCCCCCC
TTATCCCTTATCGCCGCTTTAAAAATTTTCTTTCGGCGTCTTCGTGCTGC
CTAGCTGTTTTTTTCTCCACCACCCTTCCCCATTATATATTCTGTGGGTT
TACTCTTCCGTACTCGATCTCAGATATACGAGAAGTTACCAGTCTTTACT
CTTGCGTCCCAAAAACAGAGGCGTACTAATTTGCGTGTCCGCACCTCTTC
AGGGGTGTGTGTGCTCTCTCGGTTCATCGGGGGAAGACCGCGAAGAATTT
AGTTCCTTTCAGTTGTCCTACTCTCCCTTCATAGTGAACAGAAGTTGAAG
ATACCCCACCCCTTCCATTTGTCCCTTTCCTGAGGAGGGGGGGCTCGGTC
ATTCCTTTTCCAAAGCACCCACCACACAAGCCCTGCACACACACGCATAT
CTCTCTCTTTATCTCTCTTTCCTTTCCCTTCTTTTATTTTTCTTTCTCCT
TTTCTCTCTCCCCAACCCCTCTGTCTCCAAAACACACACCCAGTACGCTA
CCCGCAAAATTTTCACACACAAAAATCCGCTCTTACTTCCCTACGTATGT
GTATCGTCTTTTTCCTTCTTCTGCCACTTTTTTACTGTTGATGCTACTCT
ACGTCTCCTGCCCTCTGTCTTTCCCATTTCTTGATCAAAATTTCATTTCT
ACT
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Coding sequence (CDS) from alignment at scaffold_18:23868..24720-

>mRNA_6494 ID=mRNA_6494|Name=jgi.p|Nanoce1779_2|597165|organism=Nannochloropsis oceanica|type=CDS|length=219bp|location=Sequence derived from alignment at scaffold_18:23868..24720- (Nannochloropsis oceanica)
ATGATTGTGAAACTCATGGAATATGGGAAAAGCCTCATCCATATTAATAT
CACCCTGACTATTATTTTTCTACTATTTTCTCTTTTCTCTTCTTCTCCAT
CCCTTCCTCTTGTCACTTCTCTCCCTTTTCTCTTTGGTGGCCCACCAACC
CCCCCCCTCCCCCCCTTATCCCTTATCGCCGCTTTAAAAATTTTCTTTCG
GCGTCTTCGTGCTGCCTAG
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Synonyms
Publications