jgi.p|Nanoce1779_2|597163, mRNA_6493 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|597163
Unique Name	mRNA_6493
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1691
Alignment location	scaffold_18:22256..23946 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	597249
Track	FilteredModels2
ProteinId	597163

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:22256..23946 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597163	gene_6493	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597163	mRNA_6493-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6493	CDS_6493	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:22256..23946+
coding sequence from alignment at scaffold_18:22256..23946+

mRNA sequence

>mRNA_6493 ID=mRNA_6493|Name=jgi.p|Nanoce1779_2|597163|organism=Nannochloropsis oceanica|type=mRNA|length=1691bp
AGCGTGGTGGCATCGGCACTTGCATGCGCCGCCTGGGAGTTTTGTACCGT
GGTTCTCGTGCTTGTGGTCGTGCAGGTATTTTGTGTGCCTTCGAATCCTT
GCTTGCTCCTTTTTAAAGGAAGCACGAGCCTTGCGCTTCAAATTATCATC
AGTCTCAACCATGGAAGGGGCGCCGTCCTTTAAATCAAGCATGGAGACAT
AATTCTAACACCCCTCTCCCAACATACAGACGTTCCCTCTGCGTGCTACG
TGCAGGTAGTTGATAGACGACTTGCACCACTAGATTGCTCCACTTTCCAC
CTCCACCAGTACCCATGGCCCCCGCTACAAGCCCGGCCACCGCTCCCGCC
ATCACTCCTGTGGCAACTCCCACGCAAAAAGCCACGTCCCCTCCCAAGAA
AAAGACCATGCTCGACCACCTCGTGGCAGGTGGTGCGGCCGGCTTTGTGG
AATCCTCCGTCTGCCACCCCTTGGACACCATCAAAACCCGCATGCAGCTC
CGCCAAGCCGGGGGCTCCACTCACGGCCTCTTTATGACGGGCGCCCGCAT
CATCCAAAAAGAATCCTTCCTCGCCCTCTACAAGGGCCTCACAGCCGTCT
ACATGGGCATCGTTCCCAAAATGGCCGTCCGCTTTTCCTCATTCGAAGCA
TACAAAGGCTACTTGGCTAACGCCGACGGCGAGGTTTCTCCAAGCGCCAC
CTTCCTTGCTGGGCTTGGCAGCGGAGTGACTGAAGCGATCCTCGTCGTTA
CCCCTGCAGAGGTATGTAAAATTCGCCTCCAAGCTCAATTTCACTCCATG
GCTGACCCGGCCCAGTTGGCGACTCGAAAGTACCGCAATGTCTTGCAGAC
CGCGTTCCTGGTCGCAAAGGAGGAAGGGATCTCCGCCTTGTACAAGGGGG
TTGTGCCCACGGTGATGAGGCAGGGAATCAACCAAGCGGTGAATTTCACG
ACATACCAGGCAGTTAAGAGTTATTGGTTGGAGAAGCAGCAGAAGAAGGA
CTTGCTGCCGTGGGAAAGTATGTTGTTTGGTGGGTTAAGTGGCGGGCTTG
GTCCTCTTGTGAACAACCCGCTTGATGTCGTCAAGACCCGCCTACAGAAA
CAGAGGATCGTGGAGGGACAGCTCCCTAAGTACCGGGGGATTGGGCAGGC
GATCCCGGTGATCGTGAAGGAGGAGGGGGTGTTGGCTTTGTGGAAAGGGA
TTGCCCCGCGGCTGATGCGAATCATGCCTGGCCAGGCGATTACGTTTATG
ACGTATGAGTTTGTGAGTAAGCATATGGCGGGGGTGGATAGGATGGTGGA
TGGCTTGGTGAAAAAGACGGCGAGTTTGGCCAGCAGGTGACTCGCGGAGG
TGGGGGGAAAGGAGGGAGAAAAGGATGGAGAGAAGGAGGGAGAGTGAGTT
GTGATGCTTCTTAATTTGAGTCTTGCGGCTGGAAGCTTTTGATTGAATTG
ATCTTATGATGGATATGAGGGTGCTCTTGAGGGAGGAAAATGAGGAAGGG
AAAGAGAAATCAAACAGTTAAGGGACAGGTAGCTTGATAGAAAGTATGCT
GAAGTCGAAAGGAAGTGGGTATGGTGAGGGAGAGAGGGAGGCAGGGAGGG
AGGGAGGAAGGAAGTAGAAATGAAATTTTGATCAAGAAATGGGAAAGACA
GAGGGCAGGAGACGTAGAGTAGCATCAACAGTAAAAAAGTG

protein sequence of jgi.p|Nanoce1779_2|597163

>mRNA_6493-protein ID=mRNA_6493-protein|Name=jgi.p|Nanoce1779_2|597163|organism=Nannochloropsis oceanica|type=polypeptide|length=342bp
MAPATSPATAPAITPVATPTQKATSPPKKKTMLDHLVAGGAAGFVESSVC
HPLDTIKTRMQLRQAGGSTHGLFMTGARIIQKESFLALYKGLTAVYMGIV
PKMAVRFSSFEAYKGYLANADGEVSPSATFLAGLGSGVTEAILVVTPAEV
CKIRLQAQFHSMADPAQLATRKYRNVLQTAFLVAKEEGISALYKGVVPTV
MRQGINQAVNFTTYQAVKSYWLEKQQKKDLLPWESMLFGGLSGGLGPLVN
NPLDVVKTRLQKQRIVEGQLPKYRGIGQAIPVIVKEEGVLALWKGIAPRL
MRIMPGQAITFMTYEFVSKHMAGVDRMVDGLVKKTASLASR*

mRNA from alignment at scaffold_18:22256..23946+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6493 ID=mRNA_6493|Name=jgi.p|Nanoce1779_2|597163|organism=Nannochloropsis oceanica|type=mRNA|length=1691bp|location=Sequence derived from alignment at scaffold_18:22256..23946+ (Nannochloropsis oceanica)
AGCGTGGTGGCATCGGCACTTGCATGCGCCGCCTGGGAGTTTTGTACCGT
GGTTCTCGTGCTTGTGGTCGTGCAGGTATTTTGTGTGCCTTCGAATCCTT
GCTTGCTCCTTTTTAAAGGAAGCACGAGCCTTGCGCTTCAAATTATCATC
AGTCTCAACCATGGAAGGGGCGCCGTCCTTTAAATCAAGCATGGAGACAT
AATTCTAACACCCCTCTCCCAACATACAGACGTTCCCTCTGCGTGCTACG
TGCAGGTAGTTGATAGACGACTTGCACCACTAGATTGCTCCACTTTCCAC
CTCCACCAGTACCCATGGCCCCCGCTACAAGCCCGGCCACCGCTCCCGCC
ATCACTCCTGTGGCAACTCCCACGCAAAAAGCCACGTCCCCTCCCAAGAA
AAAGACCATGCTCGACCACCTCGTGGCAGGTGGTGCGGCCGGCTTTGTGG
AATCCTCCGTCTGCCACCCCTTGGACACCATCAAAACCCGCATGCAGCTC
CGCCAAGCCGGGGGCTCCACTCACGGCCTCTTTATGACGGGCGCCCGCAT
CATCCAAAAAGAATCCTTCCTCGCCCTCTACAAGGGCCTCACAGCCGTCT
ACATGGGCATCGTTCCCAAAATGGCCGTCCGCTTTTCCTCATTCGAAGCA
TACAAAGGCTACTTGGCTAACGCCGACGGCGAGGTTTCTCCAAGCGCCAC
CTTCCTTGCTGGGCTTGGCAGCGGAGTGACTGAAGCGATCCTCGTCGTTA
CCCCTGCAGAGGTATGTAAAATTCGCCTCCAAGCTCAATTTCACTCCATG
GCTGACCCGGCCCAGTTGGCGACTCGAAAGTACCGCAATGTCTTGCAGAC
CGCGTTCCTGGTCGCAAAGGAGGAAGGGATCTCCGCCTTGTACAAGGGGG
TTGTGCCCACGGTGATGAGGCAGGGAATCAACCAAGCGGTGAATTTCACG
ACATACCAGGCAGTTAAGAGTTATTGGTTGGAGAAGCAGCAGAAGAAGGA
CTTGCTGCCGTGGGAAAGTATGTTGTTTGGTGGGTTAAGTGGCGGGCTTG
GTCCTCTTGTGAACAACCCGCTTGATGTCGTCAAGACCCGCCTACAGAAA
CAGAGGATCGTGGAGGGACAGCTCCCTAAGTACCGGGGGATTGGGCAGGC
GATCCCGGTGATCGTGAAGGAGGAGGGGGTGTTGGCTTTGTGGAAAGGGA
TTGCCCCGCGGCTGATGCGAATCATGCCTGGCCAGGCGATTACGTTTATG
ACGTATGAGTTTGTGAGTAAGCATATGGCGGGGGTGGATAGGATGGTGGA
TGGCTTGGTGAAAAAGACGGCGAGTTTGGCCAGCAGGTGACTCGCGGAGG
TGGGGGGAAAGGAGGGAGAAAAGGATGGAGAGAAGGAGGGAGAGTGAGTT
GTGATGCTTCTTAATTTGAGTCTTGCGGCTGGAAGCTTTTGATTGAATTG
ATCTTATGATGGATATGAGGGTGCTCTTGAGGGAGGAAAATGAGGAAGGG
AAAGAGAAATCAAACAGTTAAGGGACAGGTAGCTTGATAGAAAGTATGCT
GAAGTCGAAAGGAAGTGGGTATGGTGAGGGAGAGAGGGAGGCAGGGAGGG
AGGGAGGAAGGAAGTAGAAATGAAATTTTGATCAAGAAATGGGAAAGACA
GAGGGCAGGAGACGTAGAGTAGCATCAACAGTAAAAAAGTG

Coding sequence (CDS) from alignment at scaffold_18:22256..23946+

>mRNA_6493 ID=mRNA_6493|Name=jgi.p|Nanoce1779_2|597163|organism=Nannochloropsis oceanica|type=CDS|length=1026bp|location=Sequence derived from alignment at scaffold_18:22256..23946+ (Nannochloropsis oceanica)
ATGGCCCCCGCTACAAGCCCGGCCACCGCTCCCGCCATCACTCCTGTGGC
AACTCCCACGCAAAAAGCCACGTCCCCTCCCAAGAAAAAGACCATGCTCG
ACCACCTCGTGGCAGGTGGTGCGGCCGGCTTTGTGGAATCCTCCGTCTGC
CACCCCTTGGACACCATCAAAACCCGCATGCAGCTCCGCCAAGCCGGGGG
CTCCACTCACGGCCTCTTTATGACGGGCGCCCGCATCATCCAAAAAGAAT
CCTTCCTCGCCCTCTACAAGGGCCTCACAGCCGTCTACATGGGCATCGTT
CCCAAAATGGCCGTCCGCTTTTCCTCATTCGAAGCATACAAAGGCTACTT
GGCTAACGCCGACGGCGAGGTTTCTCCAAGCGCCACCTTCCTTGCTGGGC
TTGGCAGCGGAGTGACTGAAGCGATCCTCGTCGTTACCCCTGCAGAGGTA
TGTAAAATTCGCCTCCAAGCTCAATTTCACTCCATGGCTGACCCGGCCCA
GTTGGCGACTCGAAAGTACCGCAATGTCTTGCAGACCGCGTTCCTGGTCG
CAAAGGAGGAAGGGATCTCCGCCTTGTACAAGGGGGTTGTGCCCACGGTG
ATGAGGCAGGGAATCAACCAAGCGGTGAATTTCACGACATACCAGGCAGT
TAAGAGTTATTGGTTGGAGAAGCAGCAGAAGAAGGACTTGCTGCCGTGGG
AAAGTATGTTGTTTGGTGGGTTAAGTGGCGGGCTTGGTCCTCTTGTGAAC
AACCCGCTTGATGTCGTCAAGACCCGCCTACAGAAACAGAGGATCGTGGA
GGGACAGCTCCCTAAGTACCGGGGGATTGGGCAGGCGATCCCGGTGATCG
TGAAGGAGGAGGGGGTGTTGGCTTTGTGGAAAGGGATTGCCCCGCGGCTG
ATGCGAATCATGCCTGGCCAGGCGATTACGTTTATGACGTATGAGTTTGT
GAGTAAGCATATGGCGGGGGTGGATAGGATGGTGGATGGCTTGGTGAAAA
AGACGGCGAGTTTGGCCAGCAGGTGA

Synonyms

Publications